Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

12233692 .. 12235484

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15390.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAAATCCATGGGTAATGATGGTAACAACAGTAACAGTAATAATAATTGGTTGGATTTTTCACTGTCTCCAAACATGAAGATGGAGTCCCCTTCTTCTTCCTCTTCTGTTGCTGCTGCTAGCTTTTTTCACTCACCACCTCACTTTAGCTATGGAGTTTACTATGGAGTTGAAGGAGGAGGAGGAGGAGAAGGGGAGGATAACGGTCCAGTCCTGTACTCCCCTCTGTCCATGATGCCACTCAAGTCTGATGGCTCTCTCTGCATTATGGAAGCTCTCAACAGGTCCCAGCACCACCCTCACGCTGCAATGGTGACAACAACTAGTCCAACTCCAAAACTAGAGGACTTCTTTGGAGGTGCAGCCATGGGGACCCATCACTATGAAAGCGCCAACGACAAAGAAGCCATGGCTCTCAGCTTAGACAGCATGTTCTACCCCCAAAACCCACACCCAACAACCCACCATCATGTACCCAGCAACCACCAAAACTTGCTTAGCCATAATCTTCAGCACGAGCAGCACACCCAGCAGCACCACCAACAACACTACTCATCATACTACTCGGGCCTCAGAACTCATGAGATGTTCTTGGAAGATGGTCACAAACAAACCCATGTTTCAGCAGATAATTACGATCTGCACCCAGCAAGAATGGGGCTTGATCTGAGCATTGCTGAGATGAAGAGCTGGGTTTCCAGAAACAATGTCATGGAGCAGAACAACATGGCTGCTGGGTGCATGGGAGACAATGGGGGAATGCCCTATGGGGATTTGCAGTGTTTGAGCTTGTCAATGAGCCCTGGCTCACAGTCCAGCTGTGTGACCGGCTCACAGCAGATTTCTCCCACTGTGACTGCAGATTGTGTGACAATGGTGGTGGATACAAAGAAAAGAGGGCCTATAAAGGTGGATCAAAAGCAGATTGTTCACAGGAAGTCATTGGATACATTTGGTCAGAGAACCTCTCAGTACAGAGGAGTCACAAGGTTTGTTATGATATGGAGGAAAAAGCTGCACGAGCTTATGATCTATCAGCACTCAAGTATTGGGGACCATCCACTCACATTAATTTCCCATTGGAAAATTATAAAAAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

368

Amino Acids

40.77

Weight (kDa)

6.61

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1091
AclWI	GGATC	1 cut(s)	921
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	218, 474, 974
AgsI	TTSAA	1 cut(s)	173
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	9 cut(s)	123, 150, 275, 420, 690, 789, 819, 1015, 1024
AluI	AGCT	9 cut(s)	123, 150, 275, 420, 690, 789, 819, 1015, 1024
Alw26I	GTCTC	2 cut(s)	72, 741
AlwI	GGATC	1 cut(s)	921
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	568, 899
ApeKI	GCWGC	8 cut(s)	113, 116, 305, 362, 520, 532, 731, 1015
AseI	ATTAAT	1 cut(s)	1070
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	6 cut(s)	206, 285, 372, 568, 899, 1054
AsuHPI	GGTGA	2 cut(s)	126, 325
AsuNHI	GCTAGC	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	4 cut(s)	206, 285, 372, 1054
BanII	GRGCYC	1 cut(s)	803
BauI	CACGAG	2 cut(s)	515, 1019
BbvI	GCAGC	8 cut(s)	100, 103, 292, 374, 532, 544, 718, 1002
BccI	CCATC	7 cut(s)	14, 76, 245, 384, 474, 593, 1065
BciT130I	CCWGG	1 cut(s)	804
BciVI	GTATCC	2 cut(s)	877, 940
BcoDI	GTCTC	2 cut(s)	72, 741
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	4 cut(s)	120, 324, 341, 1102
BfmI	CTRYAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	393
BfuI	GTATCC	2 cut(s)	877, 940
BisI	GCNGC	8 cut(s)	114, 117, 306, 363, 521, 533, 732, 1016
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	8 cut(s)	115, 118, 307, 364, 522, 534, 733, 1017
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	4 cut(s)	206, 285, 372, 1054
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	6 cut(s)	206, 285, 372, 568, 899, 1054
BmiI	GGNNCC	4 cut(s)	287, 373, 374, 1055
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	952, 984
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	2 cut(s)	227, 1027
BsaJI	CCNNGG	4 cut(s)	9, 366, 408, 802
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	315, 672
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	4 cut(s)	9, 366, 408, 802
BseGI	GGATG	1 cut(s)	1057
BseMI	GCAATG	2 cut(s)	315, 672
BseMII	CTCAG	5 cut(s)	430, 586, 659, 669, 983
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	5 cut(s)	192, 195, 198, 201, 993
BseXI	GCAGC	8 cut(s)	100, 103, 292, 374, 532, 544, 718, 1002
BseYI	CCCAGC	6 cut(s)	288, 476, 528, 646, 690, 734
BsgI	GTGCAG	3 cut(s)	381, 626, 1001
BshFI	GGCC	2 cut(s)	570, 901
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	828
BslFI	GGGAC	4 cut(s)	73, 271, 385, 1067
BsmAI	GTCTC	2 cut(s)	72, 741
BsmFI	GGGAC	4 cut(s)	73, 271, 385, 1067
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	570, 901
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp143I	GATC	4 cut(s)	637, 664, 913, 1029
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	3 cut(s)	9, 366, 408
BspANI	GGCC	2 cut(s)	570, 901
BspCNI	CTCAG	5 cut(s)	429, 585, 660, 670, 982
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	4 cut(s)	287, 373, 374, 1055
BspMAI	CTGCAG	1 cut(s)	862
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	921
BspQI	GCTCTTC	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	315, 672
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	4 cut(s)	9, 366, 408, 802
BssMI	GATC	4 cut(s)	637, 664, 913, 1029
BssSI	CACGAG	2 cut(s)	515, 1019
BssT1I	CCWWGG	3 cut(s)	9, 366, 408
Bst2BI	CACGAG	2 cut(s)	515, 1019
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	6 cut(s)	32, 38, 66, 206, 813, 853
Bst6I	CTCTTC	2 cut(s)	109, 680
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	7 cut(s)	416, 421, 497, 572, 668, 678, 969
BstDSI	CCRYGG	3 cut(s)	9, 366, 408
BstF5I	GGATG	1 cut(s)	1057
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	4 cut(s)	640, 667, 916, 1032
BstMAI	GTCTC	2 cut(s)	72, 741
BstMBI	GATC	4 cut(s)	637, 664, 913, 1029
BstMWI	GCNNNNNNNGC	5 cut(s)	261, 426, 520, 529, 1021
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	8 cut(s)	100, 103, 292, 374, 532, 544, 718, 1002
BsuI	GTATCC	2 cut(s)	877, 940
BsuRI	GGCC	2 cut(s)	570, 901
BtgI	CCRYGG	3 cut(s)	9, 366, 408
BtsCI	GGATG	1 cut(s)	1057
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	62, 785, 849
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	6 cut(s)	206, 285, 372, 568, 899, 1054
Csp6I	GTAC	3 cut(s)	217, 473, 973
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	3 cut(s)	217, 473, 973
DdeI	CTNAG	7 cut(s)	416, 421, 497, 572, 668, 678, 969
DpnI	GATC	4 cut(s)	639, 666, 915, 1031
DpnII	GATC	4 cut(s)	637, 664, 913, 1029
Eam1104I	CTCTTC	2 cut(s)	109, 680
EarI	CTCTTC	2 cut(s)	109, 680
Eco130I	CCWWGG	3 cut(s)	9, 366, 408
Eco24I	GRGCYC	1 cut(s)	803
Eco47I	GGWCC	4 cut(s)	206, 285, 372, 1054
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	565
EcoO109I	RGGNCCY	3 cut(s)	285, 372, 899
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	3 cut(s)	9, 366, 408
EcoT38I	GRGCYC	1 cut(s)	803
ErhI	CCWWGG	3 cut(s)	9, 366, 408
FaqI	GGGAC	4 cut(s)	73, 271, 385, 1067
Fnu4HI	GCNGC	8 cut(s)	114, 117, 306, 363, 521, 533, 732, 1016
FokI	GGATG	1 cut(s)	1044
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	8 cut(s)	114, 117, 306, 363, 521, 533, 732, 1016
FspBI	CTAG	4 cut(s)	120, 324, 341, 1102
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	8 cut(s)	114, 117, 306, 363, 521, 533, 732, 1016
GsaI	CCCAGC	6 cut(s)	292, 480, 532, 650, 694, 738
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	570, 901
HapII	CCGG	1 cut(s)	828
HhaI	GCGC	1 cut(s)	392
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	86, 981
HpaII	CCGG	1 cut(s)	828
HphI	GGTGA	2 cut(s)	126, 325
Hpy166II	GTNNAC	2 cut(s)	160, 931
Hpy188I	TCNGA	4 cut(s)	250, 575, 669, 960
Hpy188III	TCNNGA	2 cut(s)	581, 699
Hpy8I	GTNNAC	2 cut(s)	160, 931
HpyAV	CCTTC	3 cut(s)	102, 167, 185
HpyCH4III	ACNGT	6 cut(s)	32, 38, 66, 206, 813, 853
HpyCH4V	TGCA	8 cut(s)	264, 308, 362, 643, 741, 778, 860, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	261, 426, 520, 529, 1021
HpyF3I	CTNAG	7 cut(s)	416, 421, 497, 572, 668, 678, 969
HspAI	GCGC	1 cut(s)	390
KflI	GGGWCCC	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	637, 664, 913, 1029
LguI	GCTCTTC	1 cut(s)	680
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	8 cut(s)	100, 103, 292, 374, 532, 544, 718, 1002
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	4 cut(s)	120, 324, 341, 1102
MaeIII	GTNAC	8 cut(s)	23, 32, 313, 602, 823, 853, 868, 982
MalI	GATC	4 cut(s)	639, 666, 915, 1031
MboI	GATC	4 cut(s)	637, 664, 913, 1029
MboII	GAAGA	7 cut(s)	87, 90, 91, 96, 500, 608, 697
MhlI	GDGCHC	1 cut(s)	803
MluCI	AATT	4 cut(s)	46, 631, 1071, 1086
MlyI	GAGTC	2 cut(s)	95, 990
MmeI	TCCRAC	2 cut(s)	33, 353
MseI	TTAA	1 cut(s)	1070
MslI	CAYNNNNRTG	3 cut(s)	80, 381, 468
MspA1I	CMGCKG	1 cut(s)	819
MspI	CCGG	1 cut(s)	828
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	5 cut(s)	261, 426, 520, 529, 1021
NcoI	CCATGG	3 cut(s)	9, 366, 408
NdeII	GATC	4 cut(s)	637, 664, 913, 1029
NheI	GCTAGC	1 cut(s)	119
NlaIV	GGNNCC	4 cut(s)	287, 373, 374, 1055
NmuCI	GTSAC	6 cut(s)	313, 602, 823, 853, 868, 982
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	680
PctI	GAATGC	1 cut(s)	765
PkrI	GCNGC	8 cut(s)	115, 118, 307, 364, 522, 534, 733, 1017
PleI	GAGTC	2 cut(s)	94, 989
PpsI	GAGTC	2 cut(s)	94, 989
PpuMI	RGGWCCY	2 cut(s)	285, 372
PshBI	ATTAAT	1 cut(s)	1070
PsiI	TTATAA	1 cut(s)	1091
Psp5II	RGGWCCY	2 cut(s)	285, 372
Psp6I	CCWGG	1 cut(s)	802
PspFI	CCCAGC	6 cut(s)	288, 476, 528, 646, 690, 734
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	4 cut(s)	287, 373, 374, 1055
PspPI	GGNCC	6 cut(s)	206, 285, 372, 568, 899, 1054
PspPPI	RGGWCCY	2 cut(s)	285, 372
PstI	CTGCAG	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	819
RsaI	GTAC	3 cut(s)	218, 474, 974
RsaNI	GTAC	3 cut(s)	217, 473, 973
RseI	CAYNNNNRTG	3 cut(s)	80, 381, 468
SapI	GCTCTTC	1 cut(s)	680
SaqAI	TTAA	1 cut(s)	1070
SatI	GCNGC	8 cut(s)	114, 117, 306, 363, 521, 533, 732, 1016
Sau3AI	GATC	4 cut(s)	637, 664, 913, 1029
Sau96I	GGNCC	6 cut(s)	206, 285, 372, 568, 899, 1054
SchI	GAGTC	2 cut(s)	95, 990
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	803
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	4 cut(s)	206, 285, 372, 1054
SmiMI	CAYNNNNRTG	3 cut(s)	80, 381, 468
SmlI	CTYRAG	2 cut(s)	242, 1042
SmoI	CTYRAG	2 cut(s)	242, 1042
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	4 cut(s)	46, 631, 1071, 1086
SspMI	CTAG	4 cut(s)	120, 324, 341, 1102
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	3 cut(s)	9, 366, 408
TaaI	ACNGT	6 cut(s)	32, 38, 66, 206, 813, 853
TasI	AATT	4 cut(s)	46, 631, 1071, 1086
TatI	WGTACW	2 cut(s)	216, 972
Tru1I	TTAA	1 cut(s)	1070
Tru9I	TTAA	1 cut(s)	1070
TscAI	CASTG	3 cut(s)	69, 785, 856
TseFI	GTSAC	6 cut(s)	313, 602, 823, 853, 868, 982
TseI	GCWGC	8 cut(s)	113, 116, 305, 362, 520, 532, 731, 1015
Tsp45I	GTSAC	6 cut(s)	313, 602, 823, 853, 868, 982
TspDTI	ATGAA	4 cut(s)	17, 92, 399, 698
TspRI	CASTG	3 cut(s)	69, 785, 856
VpaK11BI	GGWCC	4 cut(s)	206, 285, 372, 1054
VspI	ATTAAT	1 cut(s)	1070
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	4 cut(s)	120, 324, 341, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.