Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

20956207 .. 20957631

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAACAAAAAGCTGCAAGAGCCTATGATCTAGCAGCTCTTAAGTATTGGGGACCATCTACTCACATCAATTTCCCATTGGAAAATTACCAAAAAGAGCTCGAGGAAATGAAGAACATGAGTAGACAGGAATATGTTGCTCACTTAAGAAGGAAAAGCAGTGGATTCTCAAGGGGGGCATCAATGTACAGAGGAGTGACAAGACATCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGGGTTGCTGGGAATAAGGATCTTTACCTTGGGACATTCAGCACACAAGAGGAAGCTGCTGAGGCTTATGACATTGCGGCCATAAAATTTCGAGGACTGAATGCTGTGACCAACTTTGACATAACAAGGTACGATGTGGATCGAATCATGGCAAGCAATACCCTTCTTGCTGGAGACAATGCCAAGCGAAACAAGGTGCTGTCTCGACCAAGTGATGAGGCTACTAACCAAATCAGCAATGGTGAACAAAGCATTACTGTCGCAGTTAAGGACACCAATGAAGTTGAGGAATGGAAAATGATGCAGCTCTTTCAGTCTTCCCAGCAAGTAGTTGATCATCAAAATGTGATTCAAGCAGATCATCGAGCAGAAGAATCCGCAACAATGGGGACTACTACTCACTTGTCTAACACCTCTTCGTTGGTGACAAGCTTGAGCAGCTCAAGAGAAGGCAGCCCTGACAAGTCAAGCCAACCAAGTTTCTTTGGAATGCCTCCAACTGCTTCTAAGTTCTTCTCAAGTTCCGGTACTAATAATACTGTCAGTTCTTGGATCCCAGCAGTCCAATCCAGGCCAGGTCTATCCCTCCCTCACATGCCGATTTTTGCTGCCTGGACTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

288

Amino Acids

32.07

Weight (kDa)

7.97

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	63 - 112	3e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	2 cut(s)	317, 618
AclWI	GGATC	4 cut(s)	267, 387, 787, 800
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	3 cut(s)	188, 371, 769
AflII	CTTAAG	2 cut(s)	41, 145
AgsI	TTSAA	1 cut(s)	593
AjnI	CCWGG	3 cut(s)	809, 814, 851
AluBI	AGCT	8 cut(s)	14, 38, 100, 230, 296, 547, 672, 681
AluI	AGCT	8 cut(s)	14, 38, 100, 230, 296, 547, 672, 681
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	408, 447
AlwI	GGATC	4 cut(s)	267, 387, 787, 800
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	318, 812
ApeKI	GCWGC	7 cut(s)	14, 35, 296, 544, 678, 693, 848
ApoI	RAATTY	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	494, 676
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	6 cut(s)	47, 283, 556, 690, 705, 835
BccI	CCATC	2 cut(s)	64, 216
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	3 cut(s)	811, 816, 853
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	408, 447
BfaI	CTAG	1 cut(s)	32
BfrI	CTTAAG	2 cut(s)	41, 145
BisI	GCNGC	8 cut(s)	15, 36, 297, 318, 545, 679, 694, 849
BlsI	GCNGC	8 cut(s)	16, 37, 298, 319, 546, 680, 695, 850
Bme1390I	CCNGG	3 cut(s)	811, 816, 853
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 794
BmrFI	CCNGG	3 cut(s)	811, 816, 853
BmsI	GCATC	3 cut(s)	188, 531, 850
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	4 cut(s)	154, 667, 694, 742
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	764
Bse3DI	GCAATG	2 cut(s)	312, 484
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	3 cut(s)	811, 816, 853
BseDI	CCNNGG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	312, 484
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	6 cut(s)	47, 283, 556, 690, 705, 835
BseYI	CCCAGC	3 cut(s)	248, 561, 796
BshFI	GGCC	2 cut(s)	320, 814
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	3 cut(s)	66, 286, 643
BsmAI	GTCTC	2 cut(s)	408, 447
BsmFI	GGGAC	3 cut(s)	66, 286, 643
BsmI	GAATGC	2 cut(s)	346, 735
BsnI	GGCC	2 cut(s)	320, 814
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
BspACI	CCGC	2 cut(s)	317, 618
BspANI	GGCC	2 cut(s)	320, 814
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	54, 794
BspPI	GGATC	4 cut(s)	267, 387, 787, 800
BspTI	CTTAAG	2 cut(s)	41, 145
BsrDI	GCAATG	2 cut(s)	312, 484
BsrGI	TGTACA	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	811, 816, 853
Bst4CI	ACNGT	2 cut(s)	499, 781
Bst6I	CTCTTC	1 cut(s)	661
BstAFI	CTTAAG	2 cut(s)	41, 145
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	228, 394
BstDEI	CTNAG	2 cut(s)	300, 747
BstKTI	GATC	6 cut(s)	31, 262, 382, 577, 601, 795
BstMAI	GTCTC	2 cut(s)	408, 447
BstMBI	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 302, 678
BstNI	CCWGG	3 cut(s)	811, 816, 853
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	3 cut(s)	809, 814, 851
BstV1I	GCAGC	6 cut(s)	47, 283, 556, 690, 705, 835
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	2 cut(s)	259, 792
BstYI	RGATCY	2 cut(s)	259, 792
BsuRI	GGCC	2 cut(s)	320, 814
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	228, 394
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	187, 370, 768
CviAII	CATG	4 cut(s)	118, 215, 388, 835
CviQI	GTAC	3 cut(s)	187, 370, 768
DdeI	CTNAG	2 cut(s)	300, 747
DpnI	GATC	6 cut(s)	30, 261, 381, 576, 600, 794
DpnII	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	3 cut(s)	809, 814, 851
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	4 cut(s)	121, 218, 391, 838
FaiI	YATR	9 cut(s)	27, 119, 135, 216, 309, 323, 362, 389, 836
FaqI	GGGAC	3 cut(s)	66, 286, 643
FatI	CATG	4 cut(s)	117, 214, 387, 834
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	8 cut(s)	15, 36, 297, 318, 545, 679, 694, 849
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	15, 36, 297, 318, 545, 679, 694, 849
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	8 cut(s)	15, 36, 297, 318, 545, 679, 694, 849
GsaI	CCCAGC	3 cut(s)	252, 565, 800
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	320, 814
HapII	CCGG	1 cut(s)	765
Hin1II	CATG	4 cut(s)	121, 218, 391, 838
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	4 cut(s)	165, 384, 589, 614
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	2 cut(s)	494, 676
Hpy166II	GTNNAC	2 cut(s)	125, 485
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	444, 684
Hpy8I	GTNNAC	2 cut(s)	125, 485
HpyAV	CCTTC	4 cut(s)	144, 234, 413, 683
HpyCH4III	ACNGT	2 cut(s)	499, 781
HpyCH4V	TGCA	2 cut(s)	17, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 302, 678
HpyF3I	CTNAG	2 cut(s)	300, 747
Hsp92II	CATG	4 cut(s)	121, 218, 391, 838
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
Lsp1109I	GCAGC	6 cut(s)	47, 283, 556, 690, 705, 835
LweI	GCATC	3 cut(s)	188, 531, 850
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	196, 346, 664
MalI	GATC	6 cut(s)	30, 261, 381, 576, 600, 794
MboI	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
MboII	GAAGA	6 cut(s)	124, 231, 549, 623, 648, 745
MflI	RGATCY	2 cut(s)	259, 792
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	70, 85, 326
MmeI	TCCRAC	1 cut(s)	761
MseI	TTAA	3 cut(s)	42, 146, 507
MslI	CAYNNNNRTG	2 cut(s)	213, 582
MspCI	CTTAAG	2 cut(s)	41, 145
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	811, 816, 853
Mva1269I	GAATGC	2 cut(s)	346, 735
MvaI	CCWGG	3 cut(s)	811, 816, 853
MwoI	GCNNNNNNNGC	3 cut(s)	20, 302, 678
NdeII	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
NlaIII	CATG	4 cut(s)	121, 218, 391, 838
NlaIV	GGNNCC	2 cut(s)	54, 794
NmuCI	GTSAC	3 cut(s)	196, 346, 664
NspI	RCATGY	1 cut(s)	838
PaeR7I	CTCGAG	1 cut(s)	101
PctI	GAATGC	2 cut(s)	346, 735
PfeI	GAWTC	4 cut(s)	165, 384, 589, 614
PkrI	GCNGC	8 cut(s)	16, 37, 298, 319, 546, 680, 695, 850
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	809, 814, 851
PspFI	CCCAGC	3 cut(s)	248, 561, 796
PspGI	CCWGG	3 cut(s)	809, 814, 851
PspN4I	GGNNCC	2 cut(s)	54, 794
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	259, 792
RsaI	GTAC	3 cut(s)	188, 371, 769
RsaNI	GTAC	3 cut(s)	187, 370, 768
RseI	CAYNNNNRTG	2 cut(s)	213, 582
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	42, 146, 507
SatI	GCNGC	8 cut(s)	15, 36, 297, 318, 545, 679, 694, 849
Sau3AI	GATC	6 cut(s)	28, 259, 379, 574, 598, 792
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	811, 816, 853
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	3 cut(s)	188, 531, 850
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	213, 582
SmlI	CTYRAG	7 cut(s)	41, 101, 145, 169, 673, 682, 757
SmoI	CTYRAG	7 cut(s)	41, 101, 145, 169, 673, 682, 757
Sse9I	AATT	3 cut(s)	70, 85, 326
SsiI	CCGC	2 cut(s)	317, 618
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	809, 814, 851
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	499, 781
TaqI	TCGA	5 cut(s)	102, 331, 382, 445, 604
TasI	AATT	3 cut(s)	70, 85, 326
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	4 cut(s)	165, 384, 589, 614
Tru1I	TTAA	3 cut(s)	42, 146, 507
Tru9I	TTAA	3 cut(s)	42, 146, 507
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	3 cut(s)	196, 346, 664
TseI	GCWGC	7 cut(s)	14, 35, 296, 544, 678, 693, 848
Tsp45I	GTSAC	3 cut(s)	196, 346, 664
TspDTI	ATGAA	2 cut(s)	125, 534
TspRI	CASTG	1 cut(s)	166
Vha464I	CTTAAG	2 cut(s)	41, 145
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.