Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

19419666 .. 19422905

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGAAATCCATGAGTAATGATAACACCAACAGTAGCAATAACTGGTTGGATTTTTCTCTCTCCCCTAACATGAAAATGGATGTTCCTCATCCTCCTTCAGACCCTCACCACCAAATTTCTCAGTCCTCTTCTCCTTCTATTCCAAATGCCTTTTTCAACTCCCCACCTCACTTTAACTATGGAATATACTATGGAGTTGATCAAGGAGATCACACTGGCTTGTACTCTGCTTTGCCCATGATGCCAATAAAGTCTGATGGTTCTCTTTGCATAATGGAAGCTCTCAACAGGTCTCATCATCCTCAAGGAATGGGAACTAGTAGTTCAAGCTCAACTCCAAAACTAGAGGACTTCTTTGGTGGTGCAACCATGGGGACCCATAACCACTATGACAACAATGACAGAGAAGCTCTAAGCTTAGACAGCATGTTTTACCAACAAATCCCAACCCATCATCATCACCATGAGCCAAACAACAACAGCCAAAACTTGCTCAACCAAGAACATGAGTCCCAACAGCAACATTTCTCGTCCTACTACTCTGGCCTAAAAACCCATGAAATGATGTTTGAGGATCATCAGAAGCAGCAAGCCCAGATTGAGCATTACAACAATGTCCAAAACCCAAGTTTGGGGTCACTTAATCACAGCATTTCTGATATGAAGAACTGGGTTCCCAGAAATTTCTCAGCTAATAATAATCAAGGGGTGTTGGAGCAGAACATGATTGGGTGCATGGGTGACAATGGTGCCGAATCTGCAGGGTCTATTGGGTCAATGCCTTACGGGGATTTACAGTGTTTGAGCTTGTCAATGAGCCCTGGCTCTCAATCAAGCTGTGTTACTGGTTCACAGCAAATCTCACCCACTTTGACTACTAATACGGATTGTGTAGTCGCCATGGATTCTTCCAAGAAAAGAGGGCCTGAAAAAGTGGAGCAAAAGCAAATTGTTCATAGGAAGTCTCTGGATACATTTGGGCAGAGAACTTCTCAGTATAGAGGAGTCACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAGAGCAGGAAAGGAAGACAAGTTTACCTGGGAGGTTATGATATGGAACAAAAAGCTGCAAGAGCCTATGATCTAGCAGCTCTTAAGTATTGGGGACCATCTACTCACATCAATTTCCCATTGGAAAATTACCAAAAAGAGCTCGAGGAAATGAAGAACATGAGTAGACAAGAATATGTTGCTCACTTAAGAAGGAAAAGCAGTGGATTCTCAAGGGGGGCATCAATGTACAGAGGAGTGACAAGACATCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGGGTTGCTGGGAATAAGGATCTTTACCTTGGGACATTCAGTGAGTCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

469

Amino Acids

52.92

Weight (kDa)

7.17

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	332 - 390	1.8e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	1240
AclWI	GGATC	2 cut(s)	582, 1383
AcsI	RAATTY	2 cut(s)	114, 682
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	224, 1304
AfiI	CCNNNNNNNGG	2 cut(s)	631, 632
AflII	CTTAAG	2 cut(s)	1157, 1261
AgsI	TTSAA	2 cut(s)	157, 327
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	820, 1101
Alw21I	GWGCWC	1 cut(s)	1218
Alw26I	GTCTC	2 cut(s)	297, 969
AlwI	GGATC	2 cut(s)	582, 1383
Ama87I	CYCGRG	1 cut(s)	1217
AoxI	GGCC	2 cut(s)	544, 923
ApeKI	GCWGC	3 cut(s)	586, 1130, 1151
ApoI	RAATTY	2 cut(s)	114, 682
AspS9I	GGNCC	3 cut(s)	375, 923, 1169
AsuHPI	GGTGA	4 cut(s)	98, 452, 752, 855
AvaI	CYCGRG	1 cut(s)	1217
AvaII	GGWCC	2 cut(s)	375, 1169
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	2 cut(s)	821, 1218
BbsI	GAAGAC	1 cut(s)	1096
Bbv12I	GWGCWC	1 cut(s)	1218
BbvI	GCAGC	3 cut(s)	598, 1117, 1163
BccI	CCATC	5 cut(s)	251, 459, 1014, 1180, 1332
BciT130I	CCWGG	2 cut(s)	822, 1103
BciVI	GTATCC	1 cut(s)	964
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	297, 969
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	3 cut(s)	318, 344, 1148
BfmI	CTRYAG	1 cut(s)	759
BfrI	CTTAAG	2 cut(s)	1157, 1261
BfuI	GTATCC	1 cut(s)	964
BisI	GCNGC	3 cut(s)	587, 1131, 1152
BlsI	GCNGC	3 cut(s)	588, 1132, 1153
Bme1390I	CCNGG	2 cut(s)	822, 1103
Bme18I	GGWCC	2 cut(s)	375, 1169
BmeT110I	CYCGRG	1 cut(s)	1217
BmgT120I	GGNCC	3 cut(s)	375, 923, 1169
BmiI	GGNNCC	5 cut(s)	376, 377, 675, 751, 1170
BmrFI	CCNGG	2 cut(s)	822, 1103
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	2 cut(s)	231, 1304
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	1096
BplI	GAGNNNNNCTC	2 cut(s)	976, 1008
BpuEI	CTTGAG	2 cut(s)	288, 1270
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	369, 820, 900, 1102, 1384
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 632
Bse1I	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BseBI	CCWGG	2 cut(s)	822, 1103
BseDI	CCNNGG	5 cut(s)	369, 820, 900, 1102, 1384
BseGI	GGATG	3 cut(s)	85, 88, 298
BseLI	CCNNNNNNNGG	2 cut(s)	631, 632
BseMII	CTCAG	3 cut(s)	134, 702, 1007
BseNI	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BseRI	GAGGAG	2 cut(s)	1017, 1323
BseXI	GCAGC	3 cut(s)	598, 1117, 1163
BseYI	CCCAGC	1 cut(s)	1364
BshFI	GGCC	2 cut(s)	546, 925
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	1 cut(s)	1218
BsiHKCI	CYCGRG	1 cut(s)	1217
BslFI	GGGAC	5 cut(s)	388, 496, 1064, 1182, 1402
BslI	CCNNNNNNNGG	2 cut(s)	631, 632
BsmAI	GTCTC	2 cut(s)	297, 969
BsmFI	GGGAC	5 cut(s)	388, 496, 1064, 1182, 1402
BsnI	GGCC	2 cut(s)	546, 925
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	1217
Bsp1286I	GDGCHC	2 cut(s)	821, 1218
Bsp1407I	TGTACA	1 cut(s)	1302
Bsp143I	GATC	5 cut(s)	199, 208, 574, 1144, 1375
Bsp19I	CCATGG	2 cut(s)	369, 900
BspANI	GGCC	2 cut(s)	546, 925
BspCNI	CTCAG	3 cut(s)	133, 701, 1006
BspLI	GGNNCC	5 cut(s)	376, 377, 675, 751, 1170
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	2 cut(s)	582, 1383
BspT107I	GGYRCC	1 cut(s)	749
BspTI	CTTAAG	2 cut(s)	1157, 1261
BspTNI	GGTCTC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	1302
BsrI	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BssECI	CCNNGG	5 cut(s)	369, 820, 900, 1102, 1384
BssMI	GATC	5 cut(s)	199, 208, 574, 1144, 1375
BssT1I	CCWWGG	3 cut(s)	369, 900, 1384
Bst2UI	CCWGG	2 cut(s)	822, 1103
Bst4CI	ACNGT	3 cut(s)	32, 798, 1058
Bst6I	CTCTTC	1 cut(s)	133
BstAFI	CTTAAG	2 cut(s)	1157, 1261
BstAUI	TGTACA	1 cut(s)	1302
BstC8I	GCNNGC	2 cut(s)	591, 1344
BstDEI	CTNAG	5 cut(s)	120, 413, 418, 688, 993
BstDSI	CCRYGG	2 cut(s)	369, 900
BstF5I	GGATG	3 cut(s)	85, 88, 298
BstKTI	GATC	5 cut(s)	202, 211, 577, 1147, 1378
BstMAI	GTCTC	2 cut(s)	297, 969
BstMBI	GATC	5 cut(s)	199, 208, 574, 1144, 1375
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 423, 758, 1136
BstNI	CCWGG	2 cut(s)	822, 1103
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	820, 1101
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	3 cut(s)	598, 1117, 1163
BstV2I	GAAGAC	1 cut(s)	1096
BstX2I	RGATCY	1 cut(s)	1375
BstYI	RGATCY	1 cut(s)	1375
BsuI	GTATCC	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	546, 925
BtgI	CCRYGG	2 cut(s)	369, 900
BtsCI	GGATG	3 cut(s)	85, 88, 298
BtsI	GCAGTG	1 cut(s)	1282
BtsIMutI	CAGTG	4 cut(s)	213, 803, 1282, 1402
Cac8I	GCNNGC	2 cut(s)	591, 1344
Cfr13I	GGNCC	3 cut(s)	375, 923, 1169
Csp6I	GTAC	2 cut(s)	223, 1303
CviQI	GTAC	2 cut(s)	223, 1303
DdeI	CTNAG	5 cut(s)	120, 413, 418, 688, 993
DpnI	GATC	5 cut(s)	201, 210, 576, 1146, 1377
DpnII	GATC	5 cut(s)	199, 208, 574, 1144, 1375
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	1216
Eco130I	CCWWGG	3 cut(s)	369, 900, 1384
Eco24I	GRGCYC	2 cut(s)	821, 1218
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	375, 1169
Eco53kI	GAGCTC	1 cut(s)	1216
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	1217
EcoICRI	GAGCTC	1 cut(s)	1216
EcoO109I	RGGNCCY	2 cut(s)	375, 923
EcoRII	CCWGG	2 cut(s)	820, 1101
EcoT14I	CCWWGG	3 cut(s)	369, 900, 1384
EcoT38I	GRGCYC	2 cut(s)	821, 1218
ErhI	CCWWGG	3 cut(s)	369, 900, 1384
FaqI	GGGAC	5 cut(s)	388, 496, 1064, 1182, 1402
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	1240
Fnu4HI	GCNGC	3 cut(s)	587, 1131, 1152
FokI	GGATG	3 cut(s)	75, 92, 285
FriOI	GRGCYC	2 cut(s)	821, 1218
Fsp4HI	GCNGC	3 cut(s)	587, 1131, 1152
FspBI	CTAG	3 cut(s)	318, 344, 1148
GluI	GCNGC	3 cut(s)	587, 1131, 1152
GsaI	CCCAGC	1 cut(s)	1368
HaeIII	GGCC	2 cut(s)	546, 925
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	6 cut(s)	509, 755, 905, 1005, 1281, 1400
HphI	GGTGA	4 cut(s)	98, 452, 752, 855
Hpy166II	GTNNAC	3 cut(s)	851, 1099, 1241
Hpy188I	TCNGA	6 cut(s)	100, 256, 582, 658, 1077, 1350
Hpy188III	TCNNGA	1 cut(s)	968
Hpy8I	GTNNAC	3 cut(s)	851, 1099, 1241
HpyAV	CCTTC	5 cut(s)	105, 144, 1064, 1260, 1350
HpyCH4III	ACNGT	3 cut(s)	32, 798, 1058
HpyCH4V	TGCA	6 cut(s)	270, 365, 735, 761, 1062, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 423, 758, 1136
HpyF3I	CTNAG	5 cut(s)	120, 413, 418, 688, 993
KflI	GGGWCCC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	199, 208, 574, 1144, 1375
LmnI	GCTCC	2 cut(s)	715, 937
Lsp1109I	GCAGC	3 cut(s)	598, 1117, 1163
LweI	GCATC	2 cut(s)	231, 1304
MaeI	CTAG	3 cut(s)	318, 344, 1148
MaeIII	GTNAC	6 cut(s)	636, 740, 841, 1006, 1312, 1401
MalI	GATC	5 cut(s)	201, 210, 576, 1146, 1377
MboI	GATC	5 cut(s)	199, 208, 574, 1144, 1375
MboII	GAAGA	6 cut(s)	120, 676, 900, 1101, 1240, 1347
MflI	RGATCY	1 cut(s)	1375
MhlI	GDGCHC	2 cut(s)	821, 1218
MluCI	AATT	5 cut(s)	114, 682, 948, 1186, 1201
MlyI	GAGTC	3 cut(s)	518, 1014, 1409
MmeI	TCCRAC	2 cut(s)	27, 693
MseI	TTAA	4 cut(s)	174, 642, 1158, 1262
MslI	CAYNNNNRTG	3 cut(s)	74, 462, 1329
MspCI	CTTAAG	2 cut(s)	1157, 1261
MspR9I	CCNGG	2 cut(s)	822, 1103
MvaI	CCWGG	2 cut(s)	822, 1103
MwoI	GCNNNNNNNGC	4 cut(s)	241, 423, 758, 1136
NcoI	CCATGG	2 cut(s)	369, 900
NdeII	GATC	5 cut(s)	199, 208, 574, 1144, 1375
NlaIV	GGNNCC	5 cut(s)	376, 377, 675, 751, 1170
NmuCI	GTSAC	5 cut(s)	636, 740, 1006, 1312, 1401
NspI	RCATGY	1 cut(s)	430
PaeR7I	CTCGAG	1 cut(s)	1217
PfeI	GAWTC	3 cut(s)	755, 905, 1281
PkrI	GCNGC	3 cut(s)	588, 1132, 1153
PleI	GAGTC	3 cut(s)	517, 1013, 1408
PpsI	GAGTC	3 cut(s)	517, 1013, 1408
PpuMI	RGGWCCY	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	1218
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	820, 1101
PspFI	CCCAGC	1 cut(s)	1364
PspGI	CCWGG	2 cut(s)	820, 1101
PspN4I	GGNNCC	5 cut(s)	376, 377, 675, 751, 1170
PspPI	GGNCC	3 cut(s)	375, 923, 1169
PspPPI	RGGWCCY	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	1217
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	1375
RsaI	GTAC	2 cut(s)	224, 1304
RsaNI	GTAC	2 cut(s)	223, 1303
RseI	CAYNNNNRTG	3 cut(s)	74, 462, 1329
SacI	GAGCTC	1 cut(s)	1218
SaqAI	TTAA	4 cut(s)	174, 642, 1158, 1262
SatI	GCNGC	3 cut(s)	587, 1131, 1152
Sau3AI	GATC	5 cut(s)	199, 208, 574, 1144, 1375
Sau96I	GGNCC	3 cut(s)	375, 923, 1169
SchI	GAGTC	3 cut(s)	518, 1014, 1409
ScrFI	CCNGG	2 cut(s)	822, 1103
SduI	GDGCHC	2 cut(s)	821, 1218
SfaNI	GCATC	2 cut(s)	231, 1304
SfcI	CTRYAG	1 cut(s)	759
Sfr274I	CTCGAG	1 cut(s)	1217
SinI	GGWCC	2 cut(s)	375, 1169
SlaI	CTCGAG	1 cut(s)	1217
SmiMI	CAYNNNNRTG	3 cut(s)	74, 462, 1329
SmlI	CTYRAG	5 cut(s)	303, 1157, 1217, 1261, 1285
SmoI	CTYRAG	5 cut(s)	303, 1157, 1217, 1261, 1285
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	5 cut(s)	114, 682, 948, 1186, 1201
SspMI	CTAG	3 cut(s)	318, 344, 1148
SstI	GAGCTC	1 cut(s)	1218
StyD4I	CCNGG	2 cut(s)	820, 1101
StyI	CCWWGG	3 cut(s)	369, 900, 1384
TaaI	ACNGT	3 cut(s)	32, 798, 1058
TaqI	TCGA	1 cut(s)	1218
TasI	AATT	5 cut(s)	114, 682, 948, 1186, 1201
TatI	WGTACW	2 cut(s)	222, 1302
TfiI	GAWTC	3 cut(s)	755, 905, 1281
Tru1I	TTAA	4 cut(s)	174, 642, 1158, 1262
Tru9I	TTAA	4 cut(s)	174, 642, 1158, 1262
TscAI	CASTG	4 cut(s)	220, 803, 1282, 1402
TseFI	GTSAC	5 cut(s)	636, 740, 1006, 1312, 1401
TseI	GCWGC	3 cut(s)	586, 1130, 1151
Tsp45I	GTSAC	5 cut(s)	636, 740, 1006, 1312, 1401
TspDTI	ATGAA	7 cut(s)	17, 86, 573, 677, 944, 1050, 1241
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	4 cut(s)	220, 803, 1282, 1402
Vha464I	CTTAAG	2 cut(s)	1157, 1261
VpaK11BI	GGWCC	2 cut(s)	375, 1169
XapI	RAATTY	2 cut(s)	114, 682
XceI	RCATGY	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	1217
XmiI	GTMKAC	1 cut(s)	1240
XspI	CTAG	3 cut(s)	318, 344, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.