FvH4_2g35130

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015558
Physical Location & Seq
Reverse (-)
25962404 .. 25962822
419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35130.t1

Sequence Viewer

Length: 339 bp
ATGGAGATGGATAGGCAGAGGAGTTTACAGAGGCTGAAATGCACAGTCCAGAACTACGACTGGGGCAAGAAAGGCCTAGATTCTGAGGTGCTGTCTGTGGCGAAGGCATTGTCAATACAGGCTCACCCAGATACAGAATTGGCCAAGGTTTTGCACAAGTCTATGCCGGACCTTTACAAGGATGATAATCACAAGCCGGAGATGGCGCTTGCTACAACACATTTTCAAGCTCTAAGTGGTTTCATTGCTTTGGAGGTCTCCCTCTATAACAAATTACTAGAGCGAGCTTCAGTTCATGGAGCTGTTTCGGTGTCATCTTCCTGGCGGAGAATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

8.76

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 30 - 81 5.9e-19 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 3 cut(s) 230, 287, 302
AluI AGCT 3 cut(s) 230, 287, 302
Alw26I GTCTC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 2 cut(s) 73, 141
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 143
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 77, 278
BfoI RGCGCY 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 75, 143
BsiSI CCGG 2 cut(s) 167, 197
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 75, 143
Bso31I GGTCTC 1 cut(s) 262
BspACI CCGC 1 cut(s) 325
BspANI GGCC 2 cut(s) 75, 143
BspCNI CTCAG 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 210, 285
BstDEI CTNAG 2 cut(s) 84, 233
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BsuRI GGCC 2 cut(s) 75, 143
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 210, 285
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 1 cut(s) 296
CviJI RGCY 8 cut(s) 34, 75, 122, 143, 196, 230, 287, 302
CviKI_1 RGCY 8 cut(s) 34, 75, 122, 143, 196, 230, 287, 302
DdeI CTNAG 2 cut(s) 84, 233
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 299
FaiI YATR 3 cut(s) 164, 267, 297
FatI CATG 1 cut(s) 295
FokI GGATG 1 cut(s) 194
FspBI CTAG 2 cut(s) 77, 278
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 2 cut(s) 75, 143
HapII CCGG 2 cut(s) 167, 197
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 80, 330
HpaII CCGG 2 cut(s) 167, 197
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 42, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 84, 233
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 8 cut(s) 46, 62, 104, 141, 180, 210, 307, 334
MaeI CTAG 2 cut(s) 77, 278
MboII GAAGA 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 137, 272
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 5 cut(s) 12, 24, 79, 247, 272
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 2 cut(s) 167, 197
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 299
PceI AGGCCT 1 cut(s) 75
PfeI GAWTC 2 cut(s) 80, 330
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 322
SetI ASST 7 cut(s) 90, 150, 174, 232, 258, 289, 304
SinI GGWCC 1 cut(s) 169
Sse9I AATT 2 cut(s) 137, 272
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 325
SspMI CTAG 2 cut(s) 77, 278
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 46
TasI AATT 2 cut(s) 137, 272
TfiI GAWTC 2 cut(s) 80, 330
TspDTI ATGAA 2 cut(s) 232, 284
VpaK11BI GGWCC 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 176
XspI CTAG 2 cut(s) 77, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.