Rh7CG252000

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015558
Physical Location & Seq
Reverse (-)
24336616 .. 24343468
6853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG252000.1

Sequence Viewer

Length: 705 bp
ATGGAGAAGTCATTGATTCACAAATCAATGAAGCTGAGGCAGAGGAGTGTTCAGAGGCTGAGCTGCTCTGTTCAGAACTATGACTGGGGGAAGAAAGGCCCGGACTCTGAGGTGGCCAGGCTCTATGCCTCCAATTCTGGCTCTGAAATTGACCCGGAAAAGCCTTATGCTGAGTTATGGATGGGAACCCATGATTCTGGACCCTCATTCTTGATTCATCAGGATCTCAATGGCATGTCTATGTCCCTCAAGGACTGGGTTTCAGCCAACTCAAATGAGCTGCTTGGTCATAAAGTCGTCCAAAAGTGGGGCTCTGACCTCCCATTCTTGTTTAAGGTGCTTTCTGTGAGAAAGGCATTGTCGATACAGGCACATCCGGATAAGGACTTGGCCAAGGTTTTGCACAAGTTTATGCCAAGTGCTTACAAGGACGATAATCACAAGCCTGAGATGGCACTTGCTATAACACATTTTCAGGCTCTTTGTGGCTTTATCACTCTCGAGAACAGCTACTGCTGTGTTAACGTTTTACCAATCCATTGGAACTCATCAGTCCCATGGACATCTCTAGACCTCTGGCATGGTGAATCATTGTGGAACGAAAAGAACTTGTTCACTGACTGTGTTGATGTGCATATGTGCAGGAAGGGTATAGAAGAAGAATCGAAGCTGGCAAGAAAATCAGCAACATACCTATCGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

234

Amino Acids

26.61

Weight (kDa)

7.16

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 17 - 164 3.4e-51 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 376
AclI AACGTT 1 cut(s) 525
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 114, 390
AfiI CCNNNNNNNGG 1 cut(s) 307
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 5 cut(s) 34, 63, 280, 510, 670
AluI AGCT 5 cut(s) 34, 63, 280, 510, 670
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 2 cut(s) 58, 513
Ama87I CYCGRG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 3 cut(s) 97, 114, 390
ApeKI GCWGC 2 cut(s) 63, 280
Asp700I GAANNNNTTC 1 cut(s) 611
AspS9I GGNCC 2 cut(s) 98, 200
AsuC2I CCSGG 2 cut(s) 101, 155
AsuHPI GGTGA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 2 cut(s) 116, 392
BanII GRGCYC 1 cut(s) 314
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 50, 267
BccI CCATC 2 cut(s) 175, 445
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 101, 155
BfaI CTAG 1 cut(s) 569
BisI GCNGC 2 cut(s) 64, 281
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 2 cut(s) 65, 282
Bme1390I CCNGG 3 cut(s) 101, 118, 155
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 2 cut(s) 98, 200
BmiI GGNNCC 2 cut(s) 187, 202
BmrFI CCNGG 3 cut(s) 101, 118, 155
BmrI ACTGGG 2 cut(s) 94, 265
BmuI ACTGGG 2 cut(s) 94, 265
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 101, 155
BsaJI CCNNGG 2 cut(s) 393, 557
BsaWI WCCGGW 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 89, 260
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 393, 557
BseGI GGATG 2 cut(s) 186, 373
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 5 cut(s) 26, 50, 99, 162, 438
BseNI ACTGG 2 cut(s) 89, 260
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 50, 267
BsgI GTGCAG 1 cut(s) 661
BshFI GGCC 3 cut(s) 99, 116, 392
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 3 cut(s) 101, 155, 377
BslFI GGGAC 2 cut(s) 229, 539
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 229, 539
BsnI GGCC 3 cut(s) 99, 116, 392
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 59
Bsp19I CCATGG 1 cut(s) 557
BspANI GGCC 3 cut(s) 99, 116, 392
BspCNI CTCAG 5 cut(s) 27, 51, 100, 163, 439
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 187, 202
BspPI GGATC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 89, 260
BssECI CCNNGG 2 cut(s) 393, 557
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 393, 557
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 5 cut(s) 35, 59, 108, 171, 447
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 2 cut(s) 186, 373
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 3 cut(s) 99, 116, 153
BstV1I GCAGC 2 cut(s) 50, 267
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 2 cut(s) 197, 540
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 3 cut(s) 99, 116, 392
BtgI CCRYGG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 186, 373
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 672
CaiI CAGNNNCTG 2 cut(s) 58, 513
Cfr13I GGNCC 2 cut(s) 98, 200
CviAII CATG 5 cut(s) 191, 235, 558, 581, 702
DdeI CTNAG 5 cut(s) 35, 59, 108, 171, 447
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 114, 390
Eco130I CCWWGG 2 cut(s) 393, 557
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 393, 557
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 393, 557
FaeI CATG 5 cut(s) 194, 238, 561, 584, 705
FaqI GGGAC 2 cut(s) 229, 539
FatI CATG 5 cut(s) 190, 234, 557, 580, 701
FauNDI CATATG 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 64, 281
FokI GGATG 2 cut(s) 193, 360
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 64, 281
FspBI CTAG 1 cut(s) 569
GluI GCNGC 2 cut(s) 64, 281
HaeIII GGCC 3 cut(s) 99, 116, 392
HapII CCGG 3 cut(s) 101, 155, 377
Hin1II CATG 5 cut(s) 194, 238, 561, 584, 705
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 6 cut(s) 16, 104, 194, 214, 587, 662
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 3 cut(s) 101, 155, 377
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 523, 615
Hpy188I TCNGA 5 cut(s) 54, 75, 109, 145, 316
Hpy188III TCNNGA 7 cut(s) 198, 211, 221, 377, 500, 502, 569
Hpy8I GTNNAC 2 cut(s) 523, 615
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 3 cut(s) 403, 634, 642
HpyF3I CTNAG 5 cut(s) 35, 59, 108, 171, 447
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 5 cut(s) 194, 238, 561, 584, 705
Kpn2I TCCGGA 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 50, 267
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 525
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 103, 668, 671
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 2 cut(s) 116, 392
MluCI AATT 2 cut(s) 133, 147
MluNI TGGCCA 2 cut(s) 116, 392
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 9 cut(s) 30, 36, 48, 103, 139, 214, 257, 329, 584
Mox20I TGGCCA 2 cut(s) 116, 392
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 611
MscI TGGCCA 2 cut(s) 116, 392
MseI TTAA 2 cut(s) 333, 522
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 2 cut(s) 116, 392
MspI CCGG 3 cut(s) 101, 155, 377
MspR9I CCNGG 3 cut(s) 101, 118, 155
MvaI CCWGG 1 cut(s) 118
NciI CCSGG 2 cut(s) 101, 155
NcoI CCATGG 1 cut(s) 557
NdeI CATATG 1 cut(s) 636
NdeII GATC 1 cut(s) 223
NlaIII CATG 5 cut(s) 194, 238, 561, 584, 705
NlaIV GGNNCC 2 cut(s) 187, 202
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 5 cut(s) 16, 194, 214, 587, 662
PkrI GCNGC 2 cut(s) 65, 282
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp1406I AACGTT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 187, 202
PspPI GGNCC 2 cut(s) 98, 200
PstNI CAGNNNCTG 2 cut(s) 58, 513
PsuI RGATCY 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 333, 522
SatI GCNGC 2 cut(s) 64, 281
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 98, 200
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 101, 118, 155
SduI GDGCHC 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 248, 500
SmoI CTYRAG 2 cut(s) 248, 500
Sse9I AATT 2 cut(s) 133, 147
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 99, 116, 153
StyI CCWWGG 2 cut(s) 393, 557
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 528
TaqI TCGA 4 cut(s) 362, 501, 665, 698
TasI AATT 2 cut(s) 133, 147
TfiI GAWTC 5 cut(s) 16, 194, 214, 587, 662
Tru1I TTAA 2 cut(s) 333, 522
Tru9I TTAA 2 cut(s) 333, 522
TscAI CASTG 1 cut(s) 622
TseI GCWGC 2 cut(s) 63, 280
TspDTI ATGAA 2 cut(s) 44, 206
TspRI CASTG 1 cut(s) 622
VpaK11BI GGWCC 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.