Rh5BG551300

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015558
Physical Location & Seq
Forward (+)
87640959 .. 87666621
25663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG551300.1

Sequence Viewer

Length: 810 bp
ATGGCTGGGATCGGTGGGATCGGTGTGCTAGTATGTGGTGGAGCCAACGGAGTTGTCGATGCCACTGATTATGGAAGAGGTGTGGATCTGGGGTCCTTGAGTTTTGACCTGATCGGACTGGAGGTCAATATGAAGGATGGAGGCGCGCCACTACGTGTTATTGCGGTGGGACTGCTGCAGTCAGCAGAGCAGGCTATCGGAGGTCTCGTTGGCTTTGACGGGGAGGACGGCGAACTTACCTTTGATTATGGCAGTGGGAAAATCATGGCGGGTGCGCCATCAAGAAGGTCTCCTCGAAAGAGTTTTTCGTCTCAGATTCTACAGAGGCTGAGATGCTCGGTCCAGAATTACGACTGGGGTAAGAAAGGCGGAGACTCTGAGGTGGGCAGGCTCTATGCCTACAACTCTGGTTCTGAAATTGACCCAGAAAAGCCTTACGCAGAGTTTTGGATGGGAACCCATGACTCTGGACCATCCTTTTTGATTGATAAGGATCTGAATATTAACACGAGGAATGAATCGTTTTTGCTTCTCAAAGACTGGGTATCTGATAAGTCTCATGACGTGCTGGGTCACAAGGTCGTCGAGAAGTGGGGCTCTGACCTACCTTTCTTATTTAAGGTGCTTTCGGTGGCAAAGGCTTTGTCAATCCAGGCACATCCAGATCAGGACTTGGCCAAGGCTTTGCACAAGCTGATGCCAAACATTTACAAGGACGACAATCACAAGCCTGAGATGGCGCTTGCTCTAACACATTTTCAGGCTCTTTGTGGTTTTATTACTGTTGAGAATCATGTACGGCGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

269

Amino Acids

29.24

Weight (kDa)

5.9

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 107 - 259 1.9e-48 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 164, 269, 369, 802
AclWI GGATC 4 cut(s) 17, 26, 93, 501
AcoI YGGCCR 1 cut(s) 675
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 798
AflIII ACRYGT 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 122
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 1 cut(s) 694
AluI AGCT 1 cut(s) 694
Alw26I GTCTC 5 cut(s) 209, 294, 315, 366, 561
AlwI GGATC 4 cut(s) 17, 26, 93, 501
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 1 cut(s) 675
ApeKI GCWGC 1 cut(s) 175
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AscI GGCGCGCC 1 cut(s) 144
AspLEI GCGC 4 cut(s) 146, 148, 277, 742
AspS9I GGNCC 3 cut(s) 93, 340, 470
AvaII GGWCC 3 cut(s) 93, 340, 470
BalI TGGCCA 1 cut(s) 677
BanII GRGCYC 1 cut(s) 599
BauI CACGAG 1 cut(s) 508
BbvI GCAGC 1 cut(s) 162
BccI CCATC 5 cut(s) 131, 286, 445, 481, 730
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 5 cut(s) 209, 294, 315, 366, 561
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 176, 320
BfoI RGCGCY 1 cut(s) 743
BisI GCNGC 2 cut(s) 176, 803
BlsI GCNGC 2 cut(s) 177, 804
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 3 cut(s) 93, 340, 470
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 3 cut(s) 93, 340, 470
BmiI GGNNCC 3 cut(s) 43, 94, 457
BmrFI CCNGG 1 cut(s) 653
BmrI ACTGGG 2 cut(s) 364, 550
BmsI GCATC 3 cut(s) 49, 323, 687
BmuI ACTGGG 2 cut(s) 364, 550
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 492
BsaI GGTCTC 2 cut(s) 209, 294
BsaJI CCNNGG 1 cut(s) 678
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse1I ACTGG 3 cut(s) 123, 359, 545
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 678
BseGI GGATG 4 cut(s) 142, 456, 473, 658
BseJI GATNNNNATC 1 cut(s) 492
BseMII CTCAG 4 cut(s) 320, 326, 369, 723
BseNI ACTGG 3 cut(s) 123, 359, 545
BsePI GCGCGC 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 2 cut(s) 5, 568
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 677
BslFI GGGAC 1 cut(s) 183
BsmAI GTCTC 5 cut(s) 209, 294, 315, 366, 561
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 677
Bso31I GGTCTC 2 cut(s) 209, 294
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 6 cut(s) 9, 18, 85, 111, 493, 664
BspACI CCGC 4 cut(s) 164, 269, 369, 802
BspANI GGCC 1 cut(s) 677
BspCNI CTCAG 4 cut(s) 321, 325, 370, 724
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 3 cut(s) 43, 94, 457
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 4 cut(s) 17, 26, 93, 501
BspTNI GGTCTC 2 cut(s) 209, 294
BsrI ACTGG 3 cut(s) 123, 359, 545
BssECI CCNNGG 1 cut(s) 678
BssHII GCGCGC 1 cut(s) 144
BssMI GATC 6 cut(s) 9, 18, 85, 111, 493, 664
BssSI CACGAG 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 1 cut(s) 784
Bst6I CTCTTC 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 146, 192, 389, 744
BstDEI CTNAG 4 cut(s) 312, 329, 378, 732
BstF5I GGATG 4 cut(s) 142, 456, 473, 658
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 4 cut(s) 146, 148, 277, 742
BstKTI GATC 6 cut(s) 12, 21, 88, 114, 496, 667
BstMAI GTCTC 5 cut(s) 209, 294, 315, 366, 561
BstMBI GATC 6 cut(s) 9, 18, 85, 111, 493, 664
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 2 cut(s) 176, 320
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 85, 493
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 2 cut(s) 85, 493
BsuRI GGCC 1 cut(s) 677
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 4 cut(s) 142, 456, 473, 658
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 63, 259
Cac8I GCNNGC 4 cut(s) 146, 192, 389, 744
CaiI CAGNNNCTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 559
CfoI GCGC 4 cut(s) 146, 148, 277, 742
Cfr13I GGNCC 3 cut(s) 93, 340, 470
Csp6I GTAC 1 cut(s) 797
CviAII CATG 4 cut(s) 265, 461, 560, 794
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 4 cut(s) 312, 329, 378, 732
DpnI GATC 6 cut(s) 11, 20, 87, 113, 495, 666
DpnII GATC 6 cut(s) 9, 18, 85, 111, 493, 664
DraIII CACNNNGTG 1 cut(s) 155
DriI GACNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 599
Eco31I GGTCTC 2 cut(s) 209, 294
Eco47I GGWCC 3 cut(s) 93, 340, 470
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 678
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 4 cut(s) 268, 464, 563, 797
FaiI YATR 9 cut(s) 34, 72, 131, 249, 266, 396, 462, 561, 795
FaqI GGGAC 1 cut(s) 183
FatI CATG 4 cut(s) 264, 460, 559, 793
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 176, 803
FokI GGATG 4 cut(s) 149, 460, 463, 645
FriOI GRGCYC 1 cut(s) 599
Fsp4HI GCNGC 2 cut(s) 176, 803
FspBI CTAG 1 cut(s) 29
GlaI GCGC 4 cut(s) 145, 147, 276, 741
GluI GCNGC 2 cut(s) 176, 803
GsaI CCCAGC 2 cut(s) 9, 572
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 1 cut(s) 677
HhaI GCGC 4 cut(s) 146, 148, 277, 742
Hin1II CATG 4 cut(s) 268, 464, 563, 797
Hin6I GCGC 4 cut(s) 144, 146, 275, 740
HinP1I GCGC 4 cut(s) 144, 146, 275, 740
HinfI GANTC 5 cut(s) 316, 374, 464, 518, 790
Hpy188I TCNGA 8 cut(s) 116, 200, 315, 379, 415, 498, 550, 601
Hpy188III TCNNGA 7 cut(s) 282, 343, 468, 560, 586, 662, 668
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 2 cut(s) 127, 279
HpyCH4III ACNGT 1 cut(s) 784
HpyCH4IV ACGT 2 cut(s) 154, 564
HpyCH4V TGCA 2 cut(s) 178, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 4 cut(s) 312, 329, 378, 732
HpySE526I ACGT 2 cut(s) 154, 564
Hsp92II CATG 4 cut(s) 268, 464, 563, 797
HspAI GCGC 4 cut(s) 144, 146, 275, 740
Kzo9I GATC 6 cut(s) 9, 18, 85, 111, 493, 664
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 3 cut(s) 49, 323, 687
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 154, 564
MaeIII GTNAC 1 cut(s) 572
MalI GATC 6 cut(s) 11, 20, 87, 113, 495, 666
MboI GATC 6 cut(s) 9, 18, 85, 111, 493, 664
MboII GAAGA 1 cut(s) 87
MflI RGATCY 2 cut(s) 85, 493
MhlI GDGCHC 1 cut(s) 599
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 2 cut(s) 346, 417
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 2 cut(s) 368, 458
MnlI CCTC 9 cut(s) 71, 115, 134, 194, 217, 303, 318, 373, 504
Mox20I TGGCCA 1 cut(s) 677
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 504, 618
Msp20I TGGCCA 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 6 cut(s) 9, 18, 85, 111, 493, 664
NlaIII CATG 4 cut(s) 268, 464, 563, 797
NlaIV GGNNCC 3 cut(s) 43, 94, 457
NmuCI GTSAC 1 cut(s) 572
PagI TCATGA 1 cut(s) 559
PalAI GGCGCGCC 1 cut(s) 144
PauI GCGCGC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 204
PfeI GAWTC 3 cut(s) 316, 518, 790
PkrI GCNGC 2 cut(s) 177, 804
PleI GAGTC 2 cut(s) 368, 458
PpsI GAGTC 2 cut(s) 368, 458
Ppu21I YACGTR 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 651
PspFI CCCAGC 2 cut(s) 5, 568
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 3 cut(s) 43, 94, 457
PspPI GGNCC 3 cut(s) 93, 340, 470
PspPPI RGGWCCY 1 cut(s) 93
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 328
PsuI RGATCY 2 cut(s) 85, 493
PteI GCGCGC 1 cut(s) 144
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
SaqAI TTAA 2 cut(s) 504, 618
SatI GCNGC 2 cut(s) 176, 803
Sau3AI GATC 6 cut(s) 9, 18, 85, 111, 493, 664
Sau96I GGNCC 3 cut(s) 93, 340, 470
SchI GAGTC 2 cut(s) 368, 458
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 3 cut(s) 49, 323, 687
SfcI CTRYAG 2 cut(s) 176, 320
SgsI GGCGCGCC 1 cut(s) 144
SinI GGWCC 3 cut(s) 93, 340, 470
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 2 cut(s) 346, 417
SsiI CCGC 4 cut(s) 164, 269, 369, 802
SspI AATATT 1 cut(s) 502
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 784
TaiI ACGT 2 cut(s) 157, 567
TaqI TCGA 3 cut(s) 57, 295, 585
TaqII GACCGA 1 cut(s) 328
TasI AATT 2 cut(s) 346, 417
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 3 cut(s) 316, 518, 790
Tru1I TTAA 2 cut(s) 504, 618
Tru9I TTAA 2 cut(s) 504, 618
TscAI CASTG 2 cut(s) 70, 259
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 2 cut(s) 146, 531
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 70, 259
VpaK11BI GGWCC 3 cut(s) 93, 340, 470
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.