Rw6G040540

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015558
Physical Location & Seq
Forward (+)
64300187 .. 64301335
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040540.1

Sequence Viewer

Length: 819 bp
ATGGAGATGGAGAGGCAGGGGAGTGTTCAGGAGCTGAAATGCATTGTCCAGAACTGCGAATGGGGCAAGAAAGGCCTAGATATTCTGAGTAAAATTGACCCACAAAAGCCTTGCGCCGAGTTTTGGATGGGAACCCATCAATCTGGACCTTCCTTTTTGATTGATCCGAATAACACTACGTCGTCGTTATCCTGTGACCCAAGAGTCGTCCAAAAATGGGGCTCTGACCTACCTTTCTTGTTCAAGGTGCTTTCTGTGGCGAAGGCATTGTTGATACAGGCTCACACAGATAAGGAATTGGCCACGGCTTTGCACAAGTCTATGCCTGATCTTGACAAGAGGATAATCACAAGCCGGAGATGGCGCTTGCTACAACACATTTTCAAGCTATTTGAGCTTAAGGATGTGCTCAACAATGTACCCGAGATTGTGCAAGTGGTTGGAAGTGAAGTTGCAAACCAAGTGCTTAATTCAGACCGATCGATGACGAAGATATGGGGAGATGTTCTGTTTGCATGTGCAGATACTCGGACTAGCGTAACGAGTGCATCTCAGTTGCATGTATGTAGAGCCGGAGTGAACAGCATGGTCTTTGGGCGTCCTGAATTCAGCAGCACACCTCTTGGCATTTGGAGTTGGACTAGCAAACTTGACTCATTTTGCACGTTTCTTTCCTCTTCTTATTCTAATAGATTTTTAACTACCAATACCCGCCCTCACTTGTGTTCTTGGCCCGGACAAAACCATATCTTTTCATACTCGGCACAGATGACTGTACCAGTCCGTAAATCAACAATGGCAAATATTCCATACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

272

Amino Acids

30.68

Weight (kDa)

8.91

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 10 - 110 4.1e-20 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 1 cut(s) 712
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 2 cut(s) 420, 777
AfiI CCNNNNNNNGG 2 cut(s) 123, 217
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 2 cut(s) 244, 385
AluBI AGCT 3 cut(s) 34, 388, 397
AluI AGCT 3 cut(s) 34, 388, 397
Alw21I GWGCWC 1 cut(s) 411
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 3 cut(s) 73, 300, 731
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 605
AspLEI GCGC 2 cut(s) 116, 366
AspS9I GGNCC 2 cut(s) 146, 732
AsuC2I CCSGG 1 cut(s) 735
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 302
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 624
BccI CCATC 3 cut(s) 121, 144, 354
BceAI ACGGC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 735
BfaI CTAG 3 cut(s) 77, 534, 642
BfoI RGCGCY 1 cut(s) 367
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 735
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 146, 732
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 735
BmsI GCATC 1 cut(s) 557
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BpuMI CCSGG 1 cut(s) 735
Bsa29I ATCGAT 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 217
Bse1I ACTGG 1 cut(s) 779
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 132, 409
BseLI CCNNNNNNNGG 2 cut(s) 123, 217
BseMII CTCAG 2 cut(s) 77, 566
BseNI ACTGG 1 cut(s) 779
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 482
BshFI GGCC 3 cut(s) 75, 302, 733
BshVI ATCGAT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 355, 573, 735
BslI CCNNNNNNNGG 2 cut(s) 123, 217
BsnI GGCC 3 cut(s) 75, 302, 733
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 224, 411
Bsp143I GATC 3 cut(s) 163, 328, 479
BspACI CCGC 1 cut(s) 712
BspANI GGCC 3 cut(s) 75, 302, 733
BspCNI CTCAG 2 cut(s) 78, 565
BspDI ATCGAT 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 779
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 163, 328, 479
BssNI GRCGYC 1 cut(s) 598
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 598
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 86, 552
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 132, 409
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 2 cut(s) 116, 366
BstKTI GATC 3 cut(s) 166, 331, 482
BstMBI GATC 3 cut(s) 163, 328, 479
BstMCI CGRYCG 1 cut(s) 482
BstMWI GCNNNNNNNGC 3 cut(s) 63, 72, 394
BstNSI RCATGY 2 cut(s) 519, 563
BstSCI CCNGG 1 cut(s) 733
BstV1I GCAGC 1 cut(s) 624
BstXI CCANNNNNNTGG 1 cut(s) 143
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 3 cut(s) 75, 302, 733
BsuTUI ATCGAT 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 132, 409
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 2 cut(s) 116, 366
Cfr13I GGNCC 2 cut(s) 146, 732
ClaI ATCGAT 1 cut(s) 482
CseI GACGC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 419, 776
CviAII CATG 3 cut(s) 516, 560, 586
CviQI GTAC 2 cut(s) 419, 776
DdeI CTNAG 2 cut(s) 86, 552
DpnI GATC 3 cut(s) 165, 330, 481
DpnII GATC 3 cut(s) 163, 328, 479
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 605
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 3 cut(s) 519, 563, 589
FaiI YATR 9 cut(s) 323, 496, 517, 561, 565, 587, 747, 757, 811
FatI CATG 3 cut(s) 515, 559, 585
FauI CCCGC 1 cut(s) 719
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 2 cut(s) 139, 416
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 613
FspBI CTAG 3 cut(s) 77, 534, 642
GlaI GCGC 2 cut(s) 115, 365
GluI GCNGC 1 cut(s) 613
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 3 cut(s) 75, 302, 733
HapII CCGG 3 cut(s) 355, 573, 735
HgaI GACGC 1 cut(s) 587
HhaI GCGC 2 cut(s) 116, 366
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 3 cut(s) 519, 563, 589
Hin6I GCGC 2 cut(s) 114, 364
HinP1I GCGC 2 cut(s) 114, 364
HinfI GANTC 2 cut(s) 204, 653
HpaII CCGG 3 cut(s) 355, 573, 735
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 5 cut(s) 87, 168, 226, 475, 531
Hpy188III TCNNGA 5 cut(s) 29, 49, 144, 332, 602
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 2 cut(s) 184, 187
HpyAV CCTTC 2 cut(s) 159, 256
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 2 cut(s) 179, 665
HpyCH4V TGCA 9 cut(s) 42, 313, 433, 455, 515, 521, 548, 559, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 72, 394
HpyF3I CTNAG 2 cut(s) 86, 552
HpySE526I ACGT 2 cut(s) 179, 665
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 3 cut(s) 519, 563, 589
HspAI GCGC 2 cut(s) 114, 364
Kzo9I GATC 3 cut(s) 163, 328, 479
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 1 cut(s) 557
MaeI CTAG 3 cut(s) 77, 534, 642
MaeII ACGT 2 cut(s) 179, 665
MaeIII GTNAC 2 cut(s) 194, 538
MalI GATC 3 cut(s) 165, 330, 481
MboI GATC 3 cut(s) 163, 328, 479
MboII GAAGA 2 cut(s) 502, 669
MhlI GDGCHC 2 cut(s) 224, 411
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 4 cut(s) 93, 296, 469, 605
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 2 cut(s) 213, 647
MmeI TCCRAC 2 cut(s) 421, 617
MnlI CCTC 5 cut(s) 6, 333, 630, 685, 726
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 44
MscI TGGCCA 1 cut(s) 302
MseI TTAA 3 cut(s) 399, 468, 698
Msp20I TGGCCA 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 3 cut(s) 355, 573, 735
MspR9I CCNGG 1 cut(s) 735
MwoI GCNNNNNNNGC 3 cut(s) 63, 72, 394
NciI CCSGG 1 cut(s) 735
NdeII GATC 3 cut(s) 163, 328, 479
NlaIII CATG 3 cut(s) 519, 563, 589
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 2 cut(s) 142, 740
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 2 cut(s) 519, 563
PceI AGGCCT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 614
Ple19I CGATCG 1 cut(s) 482
PleI GAGTC 2 cut(s) 212, 647
PpsI GAGTC 2 cut(s) 212, 647
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 146, 732
PstNI CAGNNNCTG 1 cut(s) 34
PvuI CGATCG 1 cut(s) 482
RsaI GTAC 2 cut(s) 420, 777
RsaNI GTAC 2 cut(s) 419, 776
SaqAI TTAA 3 cut(s) 399, 468, 698
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 3 cut(s) 163, 328, 479
Sau96I GGNCC 2 cut(s) 146, 732
SchI GAGTC 2 cut(s) 213, 647
ScrFI CCNGG 1 cut(s) 735
SduI GDGCHC 2 cut(s) 224, 411
SfaNI GCATC 1 cut(s) 557
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 93, 296, 469, 605
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 712
SspI AATATT 1 cut(s) 805
SspMI CTAG 3 cut(s) 77, 534, 642
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 733
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 2 cut(s) 182, 668
TaqI TCGA 1 cut(s) 482
TaqII GACCGA 1 cut(s) 492
TasI AATT 4 cut(s) 93, 296, 469, 605
Tru1I TTAA 3 cut(s) 399, 468, 698
Tru9I TTAA 3 cut(s) 399, 468, 698
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 744
TspGWI ACGGA 1 cut(s) 773
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 605
XceI RCATGY 2 cut(s) 519, 563
XspI CTAG 3 cut(s) 77, 534, 642
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.