Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289897.1

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Forward (+)

194 .. 868

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 575 bp

atgcaacaaccaaagcagaggcagaggagtgttcagaggctaagatgctctgtcatgaactacgactggggtaagaaaggccgagactctgtggtgggcaggttgtgtgcctccaattctcattctgaaatcgacctagaaaagccttacgctgaaatgtggatgggaacacatgactctggaccctcctttttgattgatcaggatctgaataataataatagcaccactactgggtcatctccgtctctcagagactgggtttctaacaaccctaatgacatgctcggtcacaaggttgtccaaaaatggggctcctctgatctgcctttcttgtttaaggtgcaatccgtggcaaaggcattgtcaatacaggcacacccagataaggaattggccaaggctttgcacaagtctatgccagatatttacaaggatgataattataagcctgagatggcgctggccttgacacattttcaggctctttgtggttttatcactcttgaggagcttaagaaggtgattggtaatgtccctgagattgtagaactggttggtagtgaggtcgaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

6.3

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	396
AfiI	CCNNNNNNNGG	3 cut(s)	234, 310, 388
AflII	CTTAAG	1 cut(s)	515
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	78, 249, 252
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	2 cut(s)	208, 258
AoxI	GGCC	3 cut(s)	79, 396, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	317
BccI	CCATC	2 cut(s)	157, 451
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	78, 249, 252
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	184, 316
BmrI	ACTGGG	3 cut(s)	76, 243, 268
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	3 cut(s)	76, 243, 268
BpuEI	CTTGAG	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	351, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 310, 388
Bse1I	ACTGG	4 cut(s)	71, 238, 263, 558
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	351, 399
BseGI	GGATG	2 cut(s)	168, 442
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	234, 310, 388
BseMII	CTCAG	3 cut(s)	265, 444, 531
BseNI	ACTGG	4 cut(s)	71, 238, 263, 558
BseRI	GAGGAG	3 cut(s)	40, 307, 524
BshFI	GGCC	3 cut(s)	81, 398, 467
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	234, 310, 388
BsmAI	GTCTC	3 cut(s)	78, 249, 252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	81, 398, 467
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	199, 205, 322
BspANI	GGCC	3 cut(s)	81, 398, 467
BspCNI	CTCAG	3 cut(s)	264, 445, 532
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	184, 316
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	515
BsrI	ACTGG	4 cut(s)	71, 238, 263, 558
BssECI	CCNNGG	2 cut(s)	351, 399
BssMI	GATC	3 cut(s)	199, 205, 322
BssT1I	CCWWGG	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	4 cut(s)	41, 251, 453, 540
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	168, 442
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	202, 208, 325
BstMAI	GTCTC	3 cut(s)	78, 249, 252
BstMBI	GATC	3 cut(s)	199, 205, 322
BstNSI	RCATGY	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	81, 398, 467
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	168, 442
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	465
CaiI	CAGNNNCTG	2 cut(s)	208, 258
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	3 cut(s)	55, 173, 283
DdeI	CTNAG	4 cut(s)	41, 251, 453, 540
DpnI	GATC	3 cut(s)	201, 207, 324
DpnII	GATC	3 cut(s)	199, 205, 322
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	58, 176, 286
FaiI	YATR	5 cut(s)	56, 174, 284, 419, 447
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	54, 172, 282
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	2 cut(s)	175, 449
FriOI	GRGCYC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	81, 398, 467
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	58, 176, 286
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	2 cut(s)	86, 176
HphI	GGTGA	1 cut(s)	535
Hpy188I	TCNGA	5 cut(s)	36, 127, 210, 254, 322
Hpy188III	TCNNGA	4 cut(s)	55, 180, 203, 506
HpyAV	CCTTC	1 cut(s)	514
HpyCH4V	TGCA	3 cut(s)	4, 346, 409
HpyF3I	CTNAG	4 cut(s)	41, 251, 453, 540
Hsp92II	CATG	3 cut(s)	58, 176, 286
HspAI	GCGC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 205, 322
LmnI	GCTCC	2 cut(s)	320, 511
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	201, 207, 324
MboI	GATC	3 cut(s)	199, 205, 322
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	115, 392, 442
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	2 cut(s)	80, 170
MnlI	CCTC	8 cut(s)	12, 18, 30, 121, 196, 328, 502, 559
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	339, 516
Msp20I	TGGCCA	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	515
NdeII	GATC	3 cut(s)	199, 205, 322
NlaIII	CATG	3 cut(s)	58, 176, 286
NlaIV	GGNNCC	2 cut(s)	184, 316
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	54
PleI	GAGTC	2 cut(s)	80, 170
PpsI	GAGTC	2 cut(s)	80, 170
PsiI	TTATAA	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	184, 316
PspPI	GGNCC	1 cut(s)	182
PstNI	CAGNNNCTG	2 cut(s)	208, 258
PsuI	RGATCY	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	339, 516
Sau3AI	GATC	3 cut(s)	199, 205, 322
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	80, 170
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	7 cut(s)	104, 138, 300, 345, 516, 525, 570
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	506, 515
SmoI	CTYRAG	2 cut(s)	506, 515
Sse9I	AATT	3 cut(s)	115, 392, 442
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	399
TaqI	TCGA	2 cut(s)	132, 570
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	115, 392, 442
Tru1I	TTAA	2 cut(s)	339, 516
Tru9I	TTAA	2 cut(s)	339, 516
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	2 cut(s)	234, 340
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	182
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.