Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Forward (+)

63388964 .. 63389476

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG466500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGATGGAGAAGCAGGGGAGTGTTCAGAAGCTGAAATGCACTGTCCAGAACTACGAATGGGGCAAGAAAGGCCTAGATTCTGAGGTAGCAAGGCTTTGTGCCTCCAACTCTGGTAGTAAAATTGACCCACAAAAGCCTTACGCCGAGTTTTGGATGGGAACCCATCAATCTGGACCTTCCTTTTTGATTGATCCGAATAACACTACGTCGTCGTTGTCTCTCAAAGACTGGATCTCTGACAAACCAGATGAGATTCTTGGTCACAGGGTCGTCCAAAAATGGGGCTCTGACCTACCTTTCTTGTTTAAGGTGCTTTCTGTGGCGAAGGCATTGTCGATACAGGCTCACCCAGATAAGGAATTGGCCACGGCTTTGCACAAGTCTAGCTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

132

Amino Acids

14.68

Weight (kDa)

7.77

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMI_typeI_cat	PF20511	9 - 129	6.4e-35	Phosphomannose isomerase type I, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	188, 242
AcoI	YGGCCR	1 cut(s)	366
AfiI	CCNNNNNNNGG	3 cut(s)	153, 283, 358
AluBI	AGCT	2 cut(s)	34, 390
AluI	AGCT	2 cut(s)	34, 390
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	188, 242
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	73, 366
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	290
BccI	CCATC	2 cut(s)	151, 174
BceAI	ACGGC	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	77, 387
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 283, 358
Bse1I	ACTGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	3 cut(s)	153, 283, 358
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	75, 368
BslI	CCNNNNNNNGG	3 cut(s)	153, 283, 358
BsmAI	GTCTC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	75, 368
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	193, 234
BspANI	GGCC	2 cut(s)	75, 368
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	188, 242
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	193, 234
Bst4CI	ACNGT	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	196, 237
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	193, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	75, 368
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	9 cut(s)	34, 75, 97, 139, 288, 347, 368, 374, 390
CviKI_1	RGCY	9 cut(s)	34, 75, 97, 139, 288, 347, 368, 374, 390
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	195, 236
DpnII	GATC	2 cut(s)	193, 234
EaeI	YGGCCR	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	290
FaiI	YATR	1 cut(s)	393
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	77, 387
HaeIII	GGCC	2 cut(s)	75, 368
HinfI	GANTC	2 cut(s)	80, 256
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	30, 85, 198, 241, 292
Hpy188III	TCNNGA	2 cut(s)	49, 174
Hpy99I	CGWCG	2 cut(s)	214, 217
HpyAV	CCTTC	2 cut(s)	189, 322
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	42, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	193, 234
LpnPI	CCDG	9 cut(s)	2, 62, 99, 159, 217, 253, 261, 329, 366
MaeI	CTAG	2 cut(s)	77, 387
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	195, 236
MboI	GATC	2 cut(s)	193, 234
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	2 cut(s)	123, 362
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	79, 115
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	2 cut(s)	193, 234
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	80, 256
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	193, 234
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	36, 90, 181, 212, 297, 301, 315, 392
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	123, 362
SseBI	AGGCCT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	77, 387
StuI	AGGCCT	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	123, 362
TfiI	GAWTC	2 cut(s)	80, 256
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	2 cut(s)	77, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.