Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Reverse (-)

157930 .. 158693

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggagaagcagattctacagaggctgagatgctcggtccagaattacgactggggtaagaaaggcggagactctgaggtgggcaggctctatgcctacaactctggttctgaaattgacccagaaaagccttacgcagagttttggatgggaacccatgactctggaccatcctttttgattgataaggatctgaatattaacacgaggaatgaatcgtttttgcttctcaaagactgggtttctgataagtctcatgacgtgctgggtcacaaggtcgtcgagaagtggggctctgacctacctttcttatttaaggtgctttcggtggcaaagggtttgtcaatccaggcacatccagatcaggacttggccaaggctttgcacaagctgatgccaaacatttacaaggacgacaatcacaagcctgagatggcgcttgctctaacacattttcaggctctttgtggttttattactgttgaggtatccatcctgcttgtccctgatgtttctttctctaatcatctcgatctcaatagtcatcttgccatatatcatgatgttccagcgccttattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

5.75

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	372
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	63, 258
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	372
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	2 cut(s)	439, 574
AspS9I	GGNCC	2 cut(s)	37, 167
AvaII	GGWCC	2 cut(s)	37, 167
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	205
BccI	CCATC	4 cut(s)	142, 178, 427, 500
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	63, 258
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	2 cut(s)	440, 575
BfuI	GTATCC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	37, 167
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	37, 167
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	2 cut(s)	61, 247
BmsI	GCATC	2 cut(s)	20, 384
BmuI	ACTGGG	2 cut(s)	61, 247
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	56, 242
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	153, 170, 355, 492
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	17, 66, 420
BseNI	ACTGG	2 cut(s)	56, 242
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	63, 258
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	190, 361, 532
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	3 cut(s)	18, 67, 421
BspHI	TCATGA	2 cut(s)	256, 559
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	56, 242
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	190, 361, 532
BssSI	CACGAG	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	86, 441
BstDEI	CTNAG	3 cut(s)	26, 75, 429
BstF5I	GGATG	4 cut(s)	153, 170, 355, 492
BstH2I	RGCGCY	2 cut(s)	440, 575
BstHHI	GCGC	2 cut(s)	439, 574
BstKTI	GATC	3 cut(s)	193, 364, 535
BstMAI	GTCTC	2 cut(s)	63, 258
BstMBI	GATC	3 cut(s)	190, 361, 532
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	4 cut(s)	153, 170, 355, 492
Cac8I	GCNNGC	2 cut(s)	86, 441
CaiI	CAGNNNCTG	1 cut(s)	25
CciI	TCATGA	2 cut(s)	256, 559
CfoI	GCGC	2 cut(s)	439, 574
Cfr13I	GGNCC	2 cut(s)	37, 167
CviAII	CATG	3 cut(s)	158, 257, 560
CviJI	RGCY	9 cut(s)	25, 88, 130, 294, 374, 380, 391, 427, 461
CviKI_1	RGCY	9 cut(s)	25, 88, 130, 294, 374, 380, 391, 427, 461
DdeI	CTNAG	3 cut(s)	26, 75, 429
DpnI	GATC	3 cut(s)	192, 363, 534
DpnII	GATC	3 cut(s)	190, 361, 532
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	37, 167
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	161, 260, 563
FaiI	YATR	6 cut(s)	93, 159, 258, 554, 556, 561
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	3 cut(s)	157, 256, 559
FokI	GGATG	4 cut(s)	157, 160, 342, 479
FriOI	GRGCYC	1 cut(s)	296
GlaI	GCGC	2 cut(s)	438, 573
GsaI	CCCAGC	1 cut(s)	269
HaeII	RGCGCY	2 cut(s)	440, 575
HaeIII	GGCC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	439, 574
Hin1II	CATG	3 cut(s)	161, 260, 563
Hin6I	GCGC	2 cut(s)	437, 572
HinP1I	GCGC	2 cut(s)	437, 572
HinfI	GANTC	4 cut(s)	13, 71, 161, 215
Hpy188I	TCNGA	5 cut(s)	76, 112, 195, 247, 298
Hpy188III	TCNNGA	8 cut(s)	40, 165, 257, 283, 359, 365, 530, 560
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	385
HpyF3I	CTNAG	3 cut(s)	26, 75, 429
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	161, 260, 563
HspAI	GCGC	2 cut(s)	437, 572
Kzo9I	GATC	3 cut(s)	190, 361, 532
LweI	GCATC	2 cut(s)	20, 384
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	192, 363, 534
MboI	GATC	3 cut(s)	190, 361, 532
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	43, 114
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	65, 155
MnlI	CCTC	4 cut(s)	15, 70, 201, 478
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	3 cut(s)	201, 315, 583
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
NdeII	GATC	3 cut(s)	190, 361, 532
NlaIII	CATG	3 cut(s)	161, 260, 563
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	2 cut(s)	256, 559
PfeI	GAWTC	2 cut(s)	13, 215
PleI	GAGTC	2 cut(s)	65, 155
PpsI	GAGTC	2 cut(s)	65, 155
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	37, 167
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	201, 315, 583
Sau3AI	GATC	3 cut(s)	190, 361, 532
Sau96I	GGNCC	2 cut(s)	37, 167
SchI	GAGTC	2 cut(s)	65, 155
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	8 cut(s)	81, 264, 279, 303, 307, 321, 393, 489
SfaNI	GCATC	2 cut(s)	20, 384
SfcI	CTRYAG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	37, 167
Sse9I	AATT	2 cut(s)	43, 114
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	282, 531
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	43, 114
TfiI	GAWTC	2 cut(s)	13, 215
Tru1I	TTAA	3 cut(s)	201, 315, 583
Tru9I	TTAA	3 cut(s)	201, 315, 583
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	37, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.