Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008646.1

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Reverse (-)

32093 .. 33634

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008646.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgatcagtgtagtgccagctccaaaacccaaggatcaattccgccggaaaccgcctgaaagtgaagatcggaccaggttatccggggcggcaccgacggtgctttctgtgagaaaggcattgtcgatacaggcacatccggataaggttttgcacaagtttatgccaagtacttacaaggacgataatcacaagcctgagatggcacttgctgtaacacattttcaggctctttgtggctttatcactctcgaggtgaggcagttgacagggaaggagcaactggtgttggaattggaaaggcaatatcctgatgatgtgggtgtcctgatgatgtgggtgtcatatctgctttctttctcaactatgtcaagcttagtcctggagaagcactgtatctcggagcaaatgaaccccatgcctatatgtgcgggctgccctgaaatcctgaaaggggttgccttaaattcttatgtgacaaggtacctcccaccttttgacgaatttgaggttgatcgatgccatcttccccagggagaatctgtggaatttcctgcagtccaaggtccttccattttcgtcgtcatttttggggagggaatcatatatacaagcaatcttacaggagatataaatatcacacaaggagaggttcttttcgtgcctgcagatactgagattagcataacaagtgcatctgagttgcacatatatagagccggagtgaacagcatgttctttcaagtcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

250

Amino Acids

27.9

Weight (kDa)

5.38

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	2 cut(s)	91, 483
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	4 cut(s)	43, 53, 89, 431
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	466, 503, 548
AfaI	GTAC	2 cut(s)	172, 485
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	743
AjnI	CCWGG	3 cut(s)	74, 381, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	20, 375
AluI	AGCT	2 cut(s)	20, 375
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	3 cut(s)	466, 503, 548
Asp718I	GGTACC	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	72, 566
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	72, 566
BanI	GGYRCC	2 cut(s)	91, 483
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	2 cut(s)	196, 531
BciT130I	CCWGG	3 cut(s)	76, 383, 533
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	85
BfmI	CTRYAG	2 cut(s)	555, 666
BisI	GCNGC	2 cut(s)	90, 436
BlsI	GCNGC	2 cut(s)	91, 437
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	4 cut(s)	76, 85, 383, 533
Bme18I	GGWCC	2 cut(s)	72, 566
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	72, 566
BmiI	GGNNCC	2 cut(s)	93, 485
BmrFI	CCNGG	4 cut(s)	76, 85, 383, 533
BmsI	GCATC	2 cut(s)	509, 704
BpmI	CTGGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	517
BsaJI	CCNNGG	5 cut(s)	30, 84, 531, 532, 562
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	3 cut(s)	76, 383, 533
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	5 cut(s)	30, 84, 531, 532, 562
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	3 cut(s)	189, 666, 690
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	422
BshNI	GGYRCC	2 cut(s)	91, 483
BshVI	ATCGAT	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	46, 84, 140, 720
BslI	CCNNNNNNNGG	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	3, 34, 67, 514
BspACI	CCGC	4 cut(s)	43, 53, 89, 431
BspCNI	CTCAG	3 cut(s)	190, 667, 691
BspDI	ATCGAT	1 cut(s)	517
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	93, 485
BspMAI	CTGCAG	2 cut(s)	559, 670
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	2 cut(s)	91, 483
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	5 cut(s)	30, 84, 531, 532, 562
BssMI	GATC	4 cut(s)	3, 34, 67, 514
BssT1I	CCWWGG	2 cut(s)	30, 562
Bst2UI	CCWGG	3 cut(s)	76, 383, 533
Bst4CI	ACNGT	2 cut(s)	100, 395
BstC8I	GCNNGC	3 cut(s)	18, 433, 666
BstDEI	CTNAG	4 cut(s)	198, 376, 675, 699
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	4 cut(s)	6, 37, 70, 517
BstMBI	GATC	4 cut(s)	3, 34, 67, 514
BstNI	CCWGG	3 cut(s)	76, 383, 533
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	4 cut(s)	74, 83, 381, 531
BstSFI	CTRYAG	2 cut(s)	555, 666
BstV1I	GCAGC	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	13, 391
Cac8I	GCNNGC	3 cut(s)	18, 433, 666
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	72, 566
ClaI	ATCGAT	1 cut(s)	517
CsiI	ACCWGGT	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	171, 484
CviAII	CATG	2 cut(s)	418, 733
CviJI	RGCY	7 cut(s)	20, 196, 230, 240, 375, 435, 719
CviKI_1	RGCY	7 cut(s)	20, 196, 230, 240, 375, 435, 719
CviQI	GTAC	2 cut(s)	171, 484
DdeI	CTNAG	4 cut(s)	198, 376, 675, 699
DpnI	GATC	4 cut(s)	5, 36, 69, 516
DpnII	GATC	4 cut(s)	3, 34, 67, 514
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	30, 562
Eco47I	GGWCC	2 cut(s)	72, 566
Eco88I	CYCGRG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	74, 381, 531
EcoT14I	CCWWGG	2 cut(s)	30, 562
ErhI	CCWWGG	2 cut(s)	30, 562
FaeI	CATG	2 cut(s)	421, 736
FatI	CATG	2 cut(s)	417, 732
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	90, 436
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	90, 436
GluI	GCNGC	2 cut(s)	90, 436
GsuI	CTGGAG	1 cut(s)	404
HapII	CCGG	4 cut(s)	46, 84, 140, 720
Hin1II	CATG	2 cut(s)	421, 736
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	539, 600
HpaII	CCGG	4 cut(s)	46, 84, 140, 720
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	267, 727
Hpy188I	TCNGA	3 cut(s)	72, 403, 700
Hpy188III	TCNNGA	5 cut(s)	140, 251, 311, 328, 448
Hpy8I	GTNNAC	2 cut(s)	267, 727
Hpy99I	CGWCG	2 cut(s)	100, 584
HpyAV	CCTTC	2 cut(s)	268, 579
HpyCH4III	ACNGT	2 cut(s)	100, 395
HpyCH4V	TGCA	5 cut(s)	154, 557, 668, 695, 706
HpyF3I	CTNAG	4 cut(s)	198, 376, 675, 699
Hsp92II	CATG	2 cut(s)	421, 736
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 34, 67, 514
LmnI	GCTCC	3 cut(s)	25, 277, 403
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	2 cut(s)	509, 704
MabI	ACCWGGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	214, 475
MalI	GATC	4 cut(s)	5, 36, 69, 516
MboI	GATC	4 cut(s)	3, 34, 67, 514
MboII	GAAGA	2 cut(s)	77, 518
MluCI	AATT	5 cut(s)	38, 293, 466, 503, 548
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	247, 252, 497, 502, 589, 643
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	1 cut(s)	464
MspI	CCGG	4 cut(s)	46, 84, 140, 720
MspR9I	CCNGG	4 cut(s)	76, 85, 383, 533
MvaI	CCWGG	3 cut(s)	76, 383, 533
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	4 cut(s)	3, 34, 67, 514
NlaIII	CATG	2 cut(s)	421, 736
NlaIV	GGNNCC	2 cut(s)	93, 485
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	736
PaeR7I	CTCGAG	1 cut(s)	251
PasI	CCCWGGG	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	539, 600
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	91, 437
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	74, 381, 531
PspGI	CCWGG	3 cut(s)	74, 381, 531
PspN4I	GGNNCC	2 cut(s)	93, 485
PspPI	GGNCC	2 cut(s)	72, 566
PspPPI	RGGWCCY	1 cut(s)	566
PstI	CTGCAG	2 cut(s)	559, 670
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	172, 485
RsaNI	GTAC	2 cut(s)	171, 484
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	2 cut(s)	90, 436
Sau3AI	GATC	4 cut(s)	3, 34, 67, 514
Sau96I	GGNCC	2 cut(s)	72, 566
ScaI	AGTACT	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	76, 85, 383, 533
SexAI	ACCWGGT	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	509, 704
SfcI	CTRYAG	2 cut(s)	555, 666
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	72, 566
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	38, 293, 466, 503, 548
SsiI	CCGC	4 cut(s)	43, 53, 89, 431
StyD4I	CCNGG	4 cut(s)	74, 83, 381, 531
StyI	CCWWGG	2 cut(s)	30, 562
TaaI	ACNGT	2 cut(s)	100, 395
TaqI	TCGA	3 cut(s)	125, 252, 517
TasI	AATT	5 cut(s)	38, 293, 466, 503, 548
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	539, 600
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	2 cut(s)	13, 398
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	13, 398
VpaK11BI	GGWCC	2 cut(s)	72, 566
XapI	RAATTY	3 cut(s)	466, 503, 548
XceI	RCATGY	1 cut(s)	736
XhoI	CTCGAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.