Rh4CG102200

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015558
Physical Location & Seq
Reverse (-)
18828179 .. 18832576
4398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG102200.1

Sequence Viewer

Length: 741 bp
ATGGAGATGCAACAACCAAAGCAGAGGCAGAGGAGTGTTCAGAGGCTAAGATGCTCTGTCATGAACTACGACTGGGGTAAGAAAGGCCGAGACTCTGCGGTGGGCAGGTTGTGTGCCTCCAATTCTCATTCTGAAATCGACCTAGAAAAGCCTTACGCTGAAATGTGGATGGGAACACATGACTCTGGACCCTCCTTTTTGATTGATCAGGATCTGAATAATAATAATAGCACCACTACTGGGTCATCTCCGTCTCTCAGAGACTGGGTTTCTAACAACCCTAATGACATGCTCGGTCACAAGGTTGTCCAAAAATGGGGCTCCTCTGATCTGCCTTTCTTGTTTAAGGTGCAATCCGTGGCAAAGGCATTGTCAATACAGGCACACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCAGATATTTACAAGGATGATAATTATAAGCCTGAGATGGCGCTGGCCTTGACACATTTTCAGGCTCTTTGTGGTTTTATCACTCTTGAGGAGCTTAAGAAGGTGATTGGTAATGTCCCTGAGATTGTAGAACTGGTTGGTAGTGAGGTCGAAAACCAAGTGCTTCGCACGACCAAAGAAGATGGGGAGGATAAAGTCAAGTCTGTTATACGTTTGCTTTTTACCCAACTCATGTCAACTAACAAGGAAATTATAACCACAGTAACAACTAAATTGAAGAGTCGTTTACAGACGGAAGGCCAGGTAACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

246

Amino Acids

27.71

Weight (kDa)

7.02

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 13 - 168 1.5e-44 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 453, 680
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 402
AfiI CCNNNNNNNGG 3 cut(s) 240, 316, 394
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 1 cut(s) 703
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 1 cut(s) 520
AluI AGCT 1 cut(s) 520
Alw26I GTCTC 3 cut(s) 84, 255, 258
AlwI GGATC 1 cut(s) 219
AlwNI CAGNNNCTG 2 cut(s) 214, 264
AoxI GGCC 4 cut(s) 85, 402, 471, 724
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 404
BanII GRGCYC 1 cut(s) 323
BccI CCATC 3 cut(s) 163, 457, 602
BciT130I CCWGG 1 cut(s) 728
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 84, 255, 258
BfaI CTAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 322
BmrFI CCNGG 1 cut(s) 728
BmrI ACTGGG 3 cut(s) 82, 249, 274
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 3 cut(s) 82, 249, 274
BpuEI CTTGAG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 357, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 316, 394
Bse1I ACTGG 4 cut(s) 77, 244, 269, 564
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 2 cut(s) 357, 405
BseGI GGATG 2 cut(s) 174, 448
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BseMII CTCAG 3 cut(s) 271, 450, 537
BseNI ACTGG 4 cut(s) 77, 244, 269, 564
BseRI GAGGAG 3 cut(s) 46, 313, 530
BshFI GGCC 4 cut(s) 87, 404, 473, 726
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BsmAI GTCTC 3 cut(s) 84, 255, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 4 cut(s) 87, 404, 473, 726
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 205, 211, 328
BspACI CCGC 1 cut(s) 98
BspANI GGCC 4 cut(s) 87, 404, 473, 726
BspCNI CTCAG 3 cut(s) 270, 451, 538
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 190, 322
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 521
BsrI ACTGG 4 cut(s) 77, 244, 269, 564
BssECI CCNNGG 2 cut(s) 357, 405
BssMI GATC 3 cut(s) 205, 211, 328
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 1 cut(s) 688
Bst6I CTCTTC 1 cut(s) 698
BstAFI CTTAAG 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 4 cut(s) 47, 257, 459, 546
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 174, 448
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 3 cut(s) 208, 214, 331
BstMAI GTCTC 3 cut(s) 84, 255, 258
BstMBI GATC 3 cut(s) 205, 211, 328
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 4 cut(s) 87, 404, 473, 726
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 174, 448
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 2 cut(s) 214, 264
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 4 cut(s) 61, 179, 289, 658
DdeI CTNAG 4 cut(s) 47, 257, 459, 546
DpnI GATC 3 cut(s) 207, 213, 330
DpnII GATC 3 cut(s) 205, 211, 328
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 4 cut(s) 64, 182, 292, 661
FaiI YATR 8 cut(s) 62, 180, 290, 425, 453, 635, 659, 680
FaqI GGGAC 1 cut(s) 527
FatI CATG 4 cut(s) 60, 178, 288, 657
FbaI TGATCA 1 cut(s) 205
FokI GGATG 2 cut(s) 181, 455
FriOI GRGCYC 1 cut(s) 323
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 4 cut(s) 87, 404, 473, 726
HhaI GCGC 1 cut(s) 469
Hin1II CATG 4 cut(s) 64, 182, 292, 661
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 3 cut(s) 92, 182, 706
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 663, 713
Hpy188I TCNGA 6 cut(s) 42, 133, 216, 260, 328, 740
Hpy188III TCNNGA 4 cut(s) 61, 186, 209, 512
Hpy8I GTNNAC 2 cut(s) 663, 713
HpyAV CCTTC 2 cut(s) 520, 716
HpyCH4III ACNGT 1 cut(s) 688
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 3 cut(s) 10, 352, 415
HpyF3I CTNAG 4 cut(s) 47, 257, 459, 546
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 4 cut(s) 64, 182, 292, 661
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 211, 328
LmnI GCTCC 2 cut(s) 326, 517
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 3 cut(s) 296, 688, 730
MalI GATC 3 cut(s) 207, 213, 330
MboI GATC 3 cut(s) 205, 211, 328
MboII GAAGA 2 cut(s) 617, 715
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 5 cut(s) 121, 398, 448, 675, 698
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 86, 176, 715
MnlI CCTC 9 cut(s) 18, 24, 36, 127, 202, 334, 508, 565, 607
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 2 cut(s) 345, 522
Msp20I TGGCCA 1 cut(s) 404
MspCI CTTAAG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 728
MvaI CCWGG 1 cut(s) 728
NdeII GATC 3 cut(s) 205, 211, 328
NlaIII CATG 4 cut(s) 64, 182, 292, 661
NlaIV GGNNCC 2 cut(s) 190, 322
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 292
PagI TCATGA 1 cut(s) 60
PleI GAGTC 3 cut(s) 86, 176, 714
PpsI GAGTC 3 cut(s) 86, 176, 714
PsiI TTATAA 2 cut(s) 453, 680
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 2 cut(s) 190, 322
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 214, 264
PsuI RGATCY 1 cut(s) 211
SaqAI TTAA 2 cut(s) 345, 522
Sau3AI GATC 3 cut(s) 205, 211, 328
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 3 cut(s) 86, 176, 715
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 1 cut(s) 323
SetI ASST 9 cut(s) 110, 144, 306, 351, 522, 531, 576, 640, 732
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 512, 521
SmoI CTYRAG 2 cut(s) 512, 521
Sse9I AATT 5 cut(s) 121, 398, 448, 675, 698
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 688
TaiI ACGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 138, 576
TaqII GACCGA 1 cut(s) 284
TasI AATT 5 cut(s) 121, 398, 448, 675, 698
Tru1I TTAA 2 cut(s) 345, 522
Tru9I TTAA 2 cut(s) 345, 522
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 3 cut(s) 240, 346, 734
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 292
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.