Rmu_sc0000762.1_g000073

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000762.1
OG0015558
Physical Location & Seq
Reverse (-)
276924 .. 277289
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000762.1_g000073.1.cds

Sequence Viewer

Length: 366 bp
atgaagccgaggcagaggagtgttcagaggctgagctgctctattcagaactatgattgggggaagaaaggcccggactctgaggtggccaggctctatgcctccaattctggctctgaaatcgacccggaaaagccttatgccgagttttggatgggaacccatgattctggaccctcattattgaatcatcaggatctcaatggcatgtctatgtccctcaaagactgggtttcagccaactcaaatgagctgcttggtcataaagtcgtccaaaagtggggctttgacctccctttcttgtttaaggtactgcttgccattacatttctaatcaaaccattcatgttgtatatcgtaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

7.86

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 87
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 150, 280
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 2 cut(s) 36, 253
AluI AGCT 2 cut(s) 36, 253
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 2 cut(s) 70, 87
ApeKI GCWGC 2 cut(s) 36, 253
AspS9I GGNCC 2 cut(s) 71, 173
AsuC2I CCSGG 2 cut(s) 74, 128
AvaII GGWCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 23, 240
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 2 cut(s) 74, 128
BisI GCNGC 2 cut(s) 37, 254
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 38, 255
Bme1390I CCNGG 3 cut(s) 74, 91, 128
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 71, 173
BmiI GGNNCC 2 cut(s) 160, 175
BmrFI CCNGG 3 cut(s) 74, 91, 128
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 74, 128
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 280
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 150, 280
BseMII CTCAG 2 cut(s) 23, 72
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 23, 240
BshFI GGCC 2 cut(s) 72, 89
BsiSI CCGG 2 cut(s) 74, 128
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 150, 280
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 72, 89
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 72, 89
BspCNI CTCAG 2 cut(s) 24, 73
BspLI GGNNCC 2 cut(s) 160, 175
BspPI GGATC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 32, 81
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 72, 89, 126
BstV1I GCAGC 2 cut(s) 23, 240
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 72, 89
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 71, 173
Csp6I GTAC 1 cut(s) 311
CviAII CATG 3 cut(s) 164, 208, 346
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 2 cut(s) 32, 81
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 3 cut(s) 167, 211, 349
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 163, 207, 345
Fnu4HI GCNGC 2 cut(s) 37, 254
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 37, 254
GluI GCNGC 2 cut(s) 37, 254
HaeIII GGCC 2 cut(s) 72, 89
HapII CCGG 2 cut(s) 74, 128
Hin1II CATG 3 cut(s) 167, 211, 349
HinfI GANTC 3 cut(s) 77, 167, 187
HpaII CCGG 2 cut(s) 74, 128
Hpy188I TCNGA 4 cut(s) 27, 48, 82, 118
Hpy188III TCNNGA 2 cut(s) 171, 194
HpyF3I CTNAG 2 cut(s) 32, 81
Hsp92II CATG 3 cut(s) 167, 211, 349
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 76, 87, 96, 103, 141, 156, 179, 214
Lsp1109I GCAGC 2 cut(s) 23, 240
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 8 cut(s) 3, 9, 21, 76, 112, 187, 230, 302
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 2 cut(s) 74, 128
MspR9I CCNGG 3 cut(s) 74, 91, 128
MvaI CCWGG 1 cut(s) 91
NciI CCSGG 2 cut(s) 74, 128
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 167, 211, 349
NlaIV GGNNCC 2 cut(s) 160, 175
NmeAIII GCCGAG 2 cut(s) 33, 169
NspI RCATGY 1 cut(s) 211
PfeI GAWTC 2 cut(s) 167, 187
PkrI GCNGC 2 cut(s) 38, 255
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 160, 175
PspPI GGNCC 2 cut(s) 71, 173
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 37, 254
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 71, 173
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 74, 91, 128
SetI ASST 5 cut(s) 38, 87, 255, 294, 312
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 1 cut(s) 106
StyD4I CCNGG 3 cut(s) 72, 89, 126
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 106
TfiI GAWTC 2 cut(s) 167, 187
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 2 cut(s) 36, 253
TspDTI ATGAA 2 cut(s) 17, 334
VpaK11BI GGWCC 1 cut(s) 173
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.