Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Reverse (-)

217527 .. 218165

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaagtcgaggcagaggagtgttcagaggctgagctgctctgttcagaactatgactgggggaagaaaggcccggactctgaggtggccaggctctatgcctccaattctggctctgaaatcgacccggaaaagccttatgccgagttttggatgggaacccatgattctggaccctcattcttgattcatcaggatctcaatggcatgtttatgtccctcaaagactgggtttcagccaactcaaatgagctgcttggtcataaagtcgtccaaaagtggggctctgacctccctttattgtttaaggtgctttctgtgagaaaggcattgtcgatacaggcacatccggataaggatttggccaaggttttgcacaagtttatgccaagtgcttacaacgacgataatcacaagcctgagatggcacttgctattatcgtagagaattggaattgtgtatttattattgataataggagccctttatatagagagttacagagtacacaaaaggtaatagaatccgaatacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

179

Amino Acids

20.47

Weight (kDa)

6.59

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	349
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	87, 363
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	150, 280
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	36, 253
AluI	AGCT	2 cut(s)	36, 253
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	3 cut(s)	70, 87, 363
ApeKI	GCWGC	2 cut(s)	36, 253
AspS9I	GGNCC	2 cut(s)	71, 173
AsuC2I	CCSGG	2 cut(s)	74, 128
AvaII	GGWCC	1 cut(s)	173
BalI	TGGCCA	2 cut(s)	89, 365
BanII	GRGCYC	2 cut(s)	287, 485
BbvI	GCAGC	2 cut(s)	23, 240
BccI	CCATC	2 cut(s)	148, 418
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	74, 128
BisI	GCNGC	2 cut(s)	37, 254
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	38, 255
Bme1390I	CCNGG	3 cut(s)	74, 91, 128
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	71, 173
BmiI	GGNNCC	3 cut(s)	160, 175, 482
BmrFI	CCNGG	3 cut(s)	74, 91, 128
BmrI	ACTGGG	2 cut(s)	67, 238
BmuI	ACTGGG	2 cut(s)	67, 238
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	74, 128
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 280
Bse1I	ACTGG	2 cut(s)	62, 233
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	159, 346
BseLI	CCNNNNNNNGG	2 cut(s)	150, 280
BseMII	CTCAG	3 cut(s)	23, 72, 411
BseNI	ACTGG	2 cut(s)	62, 233
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	23, 240
BshFI	GGCC	3 cut(s)	72, 89, 365
BsiSI	CCGG	3 cut(s)	74, 128, 350
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	150, 280
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	72, 89, 365
Bsp1286I	GDGCHC	2 cut(s)	287, 485
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	72, 89, 365
BspCNI	CTCAG	3 cut(s)	24, 73, 412
BspEI	TCCGGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	160, 175, 482
BspPI	GGATC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	62, 233
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	32, 81, 420
BstF5I	GGATG	2 cut(s)	159, 346
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	72, 89, 126
BstV1I	GCAGC	2 cut(s)	23, 240
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	72, 89, 365
BtsCI	GGATG	2 cut(s)	159, 346
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	71, 173
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	2 cut(s)	164, 208
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	3 cut(s)	32, 81, 420
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	87, 363
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	2 cut(s)	287, 485
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	287, 485
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	167, 211
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	163, 207
Fnu4HI	GCNGC	2 cut(s)	37, 254
FokI	GGATG	2 cut(s)	166, 333
FriOI	GRGCYC	2 cut(s)	287, 485
Fsp4HI	GCNGC	2 cut(s)	37, 254
GluI	GCNGC	2 cut(s)	37, 254
HaeIII	GGCC	3 cut(s)	72, 89, 365
HapII	CCGG	3 cut(s)	74, 128, 350
Hin1II	CATG	2 cut(s)	167, 211
HinfI	GANTC	4 cut(s)	77, 167, 187, 524
HpaII	CCGG	3 cut(s)	74, 128, 350
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	6 cut(s)	27, 48, 82, 118, 289, 529
Hpy188III	TCNNGA	4 cut(s)	171, 184, 194, 350
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	376
HpyF3I	CTNAG	3 cut(s)	32, 81, 420
Hsp92II	CATG	2 cut(s)	167, 211
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	2 cut(s)	23, 240
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	287, 485
MlsI	TGGCCA	2 cut(s)	89, 365
MluCI	AATT	4 cut(s)	106, 448, 454, 535
MluNI	TGGCCA	2 cut(s)	89, 365
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	8 cut(s)	3, 9, 21, 76, 112, 187, 230, 302
Mox20I	TGGCCA	2 cut(s)	89, 365
MroI	TCCGGA	1 cut(s)	349
MscI	TGGCCA	2 cut(s)	89, 365
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	2 cut(s)	89, 365
MspI	CCGG	3 cut(s)	74, 128, 350
MspR9I	CCNGG	3 cut(s)	74, 91, 128
MvaI	CCWGG	1 cut(s)	91
NciI	CCSGG	2 cut(s)	74, 128
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	167, 211
NlaIV	GGNNCC	3 cut(s)	160, 175, 482
NmeAIII	GCCGAG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	167, 187, 524
PkrI	GCNGC	2 cut(s)	38, 255
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	160, 175, 482
PspPI	GGNCC	2 cut(s)	71, 173
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	37, 254
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	71, 173
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	74, 91, 128
SduI	GDGCHC	2 cut(s)	287, 485
SetI	ASST	7 cut(s)	38, 87, 255, 294, 312, 372, 519
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	106, 448, 454, 535
StyD4I	CCNGG	3 cut(s)	72, 89, 126
StyI	CCWWGG	1 cut(s)	366
TaqI	TCGA	3 cut(s)	8, 123, 335
TasI	AATT	4 cut(s)	106, 448, 454, 535
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	167, 187, 524
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseI	GCWGC	2 cut(s)	36, 253
TspDTI	ATGAA	2 cut(s)	17, 179
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.