Rh6AG465200

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015558
Physical Location & Seq
Forward (+)
64721346 .. 64721690
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG465200.1

Sequence Viewer

Length: 228 bp
ATGAGATTCTTGGGTCACAGGGTCGTCCAAAAATGGGGCTCTGACCTACCTTTCTTGTTTAAGGTGCTTTCTGTGGCGAAGGCATTGTCGATACAGGCTCACCCAGATAAGGAATTGGCCACGGCTTTGCACAAGTCTATGCCTGATCTTTACAAGGAGGATAATCACAAGCCGGAGATGGCGCTTGCTACAACACATTTTCAAGCTCTTTGTGGTTTCATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

8.89

Isoelectric Point (pI)

21.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 5 - 73 1.8e-27 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 34, 109
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspLEI GCGC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 92
BalI TGGCCA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 41
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 109
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 34, 109
BseMI GCAATG 1 cut(s) 219
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 34, 109
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 1 cut(s) 184
CviJI RGCY 6 cut(s) 39, 98, 119, 125, 172, 206
CviKI_1 RGCY 6 cut(s) 39, 98, 119, 125, 172, 206
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 41
FaiI YATR 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 41
GlaI GCGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 184
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 130
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 4, 80, 117, 156, 186
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 119
MnlI CCTC 1 cut(s) 151
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 60, 226
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 1 cut(s) 173
NdeII GATC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 60, 226
Sau3AI GATC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 48, 52, 66, 208
Sse9I AATT 1 cut(s) 113
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 113
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 2 cut(s) 60, 226
Tru9I TTAA 2 cut(s) 60, 226
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.