RchiOBHm_Chr4g0399291

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015558
Physical Location & Seq
Reverse (-)
16467306 .. 16468151
846 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37142

Sequence Viewer

Length: 744 bp
ATGGAGATGCAACAACCAAAGCAGAGGCAGAGGAGGGTTCAGAGGCTAAGATGCTCTGTCATGAACTACGACTGGGGTAAGAAAGGCCGAGACTCTGTGGTGGGCAGGTTGTGTGCCTCCAATTCTCATTCTGAAATCGACCTAGAAAAGCCTTACGCTGAAATGTGGATGGGAACACATGACTCTGGACCCTCCTTTTTGATTGATCAGGATCTGAATAATAATAATAATAGCACCACTACTGGGTCATCTCCGTCTCTCAGAGACTGGGTTTCTAACAACCCTAATGACATGCTCGGTCACAAGGTTGTCCAAAAATGGGGCTCCTCTGATCTGCCTTTCTTGTTTAAGGTGCAATCCGTGGCAAAGGCATTGTCAATACAGGCACACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCAGATATTTACAAGGATGATAATTATAAGCCTGAGATGGCGCTGGCCTTGACACATTTTCAGGCTCTTTGTGGTTTTATCACTCTTGAGGAGCTTAAGAAGGTGATTGGTAATGTCCCTGAGATTGTAGAACTGGTTGGTAGTGAGGTCGAAAACCAATTGCTCCGCACGACCAAAGAAGATGGGGAGGATAAAGTCAAGTCTGTTATACGTTTGATTTTTGCCCAACTCATGTCAACTAACAAGGAAATTATAACCACAGTAACAACTAAATTGAAGAGTCGTTTACAGACGGAAAGCCAGGTAACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

247

Amino Acids

27.93

Weight (kDa)

7.72

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 13 - 169 9.7e-44 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 683
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 595
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 243, 319, 397
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Alw26I GTCTC 3 cut(s) 84, 258, 261
AlwI GGATC 1 cut(s) 219
AlwNI CAGNNNCTG 2 cut(s) 214, 267
AoxI GGCC 3 cut(s) 85, 405, 474
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 326
BccI CCATC 3 cut(s) 163, 460, 605
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 84, 258, 261
BfaI CTAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 473
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 325
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 3 cut(s) 82, 252, 277
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 3 cut(s) 82, 252, 277
BpuEI CTTGAG 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 360, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 319, 397
Bse1I ACTGG 4 cut(s) 77, 247, 272, 567
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 360, 408
BseGI GGATG 2 cut(s) 174, 451
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 243, 319, 397
BseMII CTCAG 3 cut(s) 274, 453, 540
BseNI ACTGG 4 cut(s) 77, 247, 272, 567
BseRI GAGGAG 3 cut(s) 46, 316, 533
BshFI GGCC 3 cut(s) 87, 407, 476
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 3 cut(s) 243, 319, 397
BsmAI GTCTC 3 cut(s) 84, 258, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 3 cut(s) 87, 407, 476
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 205, 211, 331
BspACI CCGC 1 cut(s) 595
BspANI GGCC 3 cut(s) 87, 407, 476
BspCNI CTCAG 3 cut(s) 273, 454, 541
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 190, 325
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 524
BsrI ACTGG 4 cut(s) 77, 247, 272, 567
BssECI CCNNGG 2 cut(s) 360, 408
BssMI GATC 3 cut(s) 205, 211, 331
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 1 cut(s) 701
BstAFI CTTAAG 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 47, 260, 462, 549
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 174, 451
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 208, 214, 334
BstMAI GTCTC 3 cut(s) 84, 258, 261
BstMBI GATC 3 cut(s) 205, 211, 331
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 87, 407, 476
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 174, 451
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 2 cut(s) 214, 267
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 4 cut(s) 61, 179, 292, 661
DdeI CTNAG 4 cut(s) 47, 260, 462, 549
DpnI GATC 3 cut(s) 207, 213, 333
DpnII GATC 3 cut(s) 205, 211, 331
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 4 cut(s) 64, 182, 295, 664
FaiI YATR 8 cut(s) 62, 180, 293, 428, 456, 638, 662, 683
FaqI GGGAC 1 cut(s) 530
FatI CATG 4 cut(s) 60, 178, 291, 660
FbaI TGATCA 1 cut(s) 205
FokI GGATG 2 cut(s) 181, 458
FriOI GRGCYC 1 cut(s) 326
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 87, 407, 476
HhaI GCGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 64, 182, 295, 664
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 3 cut(s) 92, 182, 709
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 666, 716
Hpy188I TCNGA 6 cut(s) 42, 133, 216, 263, 331, 743
Hpy188III TCNNGA 4 cut(s) 61, 186, 209, 515
Hpy8I GTNNAC 2 cut(s) 666, 716
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 3 cut(s) 10, 355, 418
HpyF3I CTNAG 4 cut(s) 47, 260, 462, 549
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 4 cut(s) 64, 182, 295, 664
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 211, 331
LmnI GCTCC 3 cut(s) 329, 520, 597
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 3 cut(s) 299, 691, 733
MalI GATC 3 cut(s) 207, 213, 333
MboI GATC 3 cut(s) 205, 211, 331
MboII GAAGA 2 cut(s) 620, 718
MfeI CAATTG 1 cut(s) 587
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 6 cut(s) 121, 401, 451, 587, 678, 701
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 3 cut(s) 86, 176, 718
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 2 cut(s) 348, 525
Msp20I TGGCCA 1 cut(s) 407
MspCI CTTAAG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 731
NdeII GATC 3 cut(s) 205, 211, 331
NlaIII CATG 4 cut(s) 64, 182, 295, 664
NlaIV GGNNCC 2 cut(s) 190, 325
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 295
PagI TCATGA 1 cut(s) 60
PleI GAGTC 3 cut(s) 86, 176, 717
PpsI GAGTC 3 cut(s) 86, 176, 717
PsiI TTATAA 2 cut(s) 456, 683
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 190, 325
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 214, 267
PsuI RGATCY 1 cut(s) 211
SaqAI TTAA 2 cut(s) 348, 525
Sau3AI GATC 3 cut(s) 205, 211, 331
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 3 cut(s) 86, 176, 718
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 326
SetI ASST 9 cut(s) 110, 144, 309, 354, 525, 534, 579, 643, 735
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 515, 524
SmoI CTYRAG 2 cut(s) 515, 524
Sse9I AATT 6 cut(s) 121, 401, 451, 587, 678, 701
SsiI CCGC 1 cut(s) 595
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 729
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 1 cut(s) 643
TaqI TCGA 2 cut(s) 138, 579
TaqII GACCGA 1 cut(s) 287
TasI AATT 6 cut(s) 121, 401, 451, 587, 678, 701
Tru1I TTAA 2 cut(s) 348, 525
Tru9I TTAA 2 cut(s) 348, 525
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 3 cut(s) 243, 349, 737
Vha464I CTTAAG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.