Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0015558

Physical Location & Seq

Genomic Coordinates Reverse (-)

65877 .. 66452

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgatcagtgtagtgccagctccaaaacccaaggatcaattcggccggaaacagccggaaagtgaagataggaccaggttatccggcgcggcaccgacggttaatattcttctcttcgattctctcaattcaaggccctatagctctagatacttccatggatccaaagaggaggagaagggggtgctttctgtgagaaaggcattgtcgatacaggcacatccggataaggacttggccaaggttttgcacaagtttatgccgagtgcttacaaggacgacaatcacaagcctgagatggcacttgctataacacattttcaggctctttgtggctcactcttgaggtatcctcatcctgtcactttcacattcgtaagatatgaacaattgacaccctttgtttttctcagcaaagatattattgctagccgaattgcttgtttcctgatgatccggtccttttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

156

Amino Acids

17.71

Weight (kDa)

9.54

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35130
rosa_chinensis	RchiOBHm_Chr4g0399291 RchiOBHm_Chr6g0306831
rosa_multiflora	Rmu_co8289897.1_g000001 Rmu_sc0000762.1_g000013 Rmu_sc0000762.1_g000060 Rmu_sc0000762.1_g000073 Rmu_sc0008646.1_g000008 Rmu_ssc0000432.1_g000044
rosa_roxburghii	Rroxscaffold_1G00031910
rosa_samantha	Rh4CG102200 Rh5BG551300 Rh6AG465200 Rh6DG466500 Rh7CG252000
rosa_wichuraiana	Rw6G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	4 cut(s)	42, 156, 169, 448
AcoI	YGGCCR	2 cut(s)	43, 237
AgsI	TTSAA	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	20, 144
AluI	AGCT	2 cut(s)	20, 144
AlwI	GGATC	4 cut(s)	42, 156, 169, 448
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	3 cut(s)	43, 134, 237
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	72, 135, 459
AsuNHI	GCTAGC	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	72, 459
BalI	TGGCCA	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	91
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	147, 429
BfmI	CTRYAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	72, 459
BmgT120I	GGNCC	3 cut(s)	72, 135, 459
BmiI	GGNNCC	2 cut(s)	93, 163
BmrFI	CCNGG	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	30, 157, 240
BsaWI	WCCGGW	2 cut(s)	223, 456
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	30, 157, 240
BseGI	GGATG	2 cut(s)	220, 355
BseMII	CTCAG	2 cut(s)	285, 424
BseRI	GAGGAG	2 cut(s)	185, 188
BseX3I	CGGCCG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	45, 136, 239
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	5 cut(s)	46, 56, 84, 224, 457
BsnI	GGCC	3 cut(s)	45, 136, 239
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	3, 34, 161, 453
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	3 cut(s)	45, 136, 239
BspCNI	CTCAG	2 cut(s)	286, 423
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	93, 163
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	4 cut(s)	42, 156, 169, 448
BspT107I	GGYRCC	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	30, 157, 240
BssMI	GATC	4 cut(s)	3, 34, 161, 453
BssT1I	CCWWGG	3 cut(s)	30, 157, 240
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	18, 430
BstDEI	CTNAG	2 cut(s)	294, 410
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	220, 355
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	4 cut(s)	6, 37, 164, 456
BstMBI	GATC	4 cut(s)	3, 34, 161, 453
BstMCI	CGRYCG	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	45, 136, 239
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	220, 355
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	18, 430
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	72, 135, 459
CsiI	ACCWGGT	1 cut(s)	74
CviAII	CATG	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	294, 410
DpnI	GATC	4 cut(s)	5, 36, 163, 455
DpnII	GATC	4 cut(s)	3, 34, 161, 453
EaeI	YGGCCR	2 cut(s)	43, 237
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	30, 157, 240
Eco47I	GGWCC	2 cut(s)	72, 459
Eco52I	CGGCCG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	3 cut(s)	30, 157, 240
ErhI	CCWWGG	3 cut(s)	30, 157, 240
FaeI	CATG	1 cut(s)	161
FaiI	YATR	5 cut(s)	141, 159, 260, 311, 384
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	207, 342
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	147, 429
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	45, 136, 239
HapII	CCGG	5 cut(s)	46, 56, 84, 224, 457
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	5 cut(s)	46, 56, 84, 224, 457
Hpy188III	TCNNGA	5 cut(s)	147, 224, 343, 448, 468
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	294, 410
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 34, 161, 453
LmnI	GCTCC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	74
MaeI	CTAG	2 cut(s)	147, 429
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	5, 36, 163, 455
MboI	GATC	4 cut(s)	3, 34, 161, 453
MboII	GAAGA	3 cut(s)	77, 101, 106
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	4 cut(s)	38, 127, 389, 435
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	4 cut(s)	163, 166, 339, 363
Mox20I	TGGCCA	1 cut(s)	239
MroI	TCCGGA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	239
MspI	CCGG	5 cut(s)	46, 56, 84, 224, 457
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	4 cut(s)	3, 34, 161, 453
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	93, 163
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	93, 163
PspPI	GGNCC	3 cut(s)	72, 135, 459
PsuI	RGATCY	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	3, 34, 161, 453
Sau96I	GGNCC	3 cut(s)	72, 135, 459
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	5 cut(s)	22, 80, 146, 246, 350
SexAI	ACCWGGT	1 cut(s)	74
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	2 cut(s)	72, 459
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	38, 127, 389, 435
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	2 cut(s)	147, 429
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	3 cut(s)	30, 157, 240
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	117, 209
TasI	AATT	4 cut(s)	38, 127, 389, 435
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	72, 459
XbaI	TCTAGA	1 cut(s)	146
XspI	CTAG	2 cut(s)	147, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.