FvH4_2g41380

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010107
Physical Location & Seq
Reverse (-)
29280775 .. 29282910
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41380.t1

Sequence Viewer

Length: 900 bp
ATGTGTCCGACCAAGCAGAAGCACCGGAGCTCCGTCGTCGATCACGCCGGCAAATGCTCCAGATCCGAAGAGTCCACAACCTCCAACGCCGACTGGATCTCCGAGTCAATCCAAGGCGGATCCTTACGGCACGTGGACCTCCACACCGGAAGCAACGGTTGGGCGTCACCTCCCGGCGACCTATTCTCTCTCCGGGGAAAAAACTACCTGACAAGGCGACAAAAAGCGCCTGCCGGAGACTACCTACTGACGCCGGTGGGCACCGACTGGCTGAAATCCAGTTCGAAGCTGGAAAATGTACTCGCCCGTCCCGATAACCGAGTGGCGCACGCGCTGCGGAAGGCCCAAGCCCAAGGCAAGTCCCTGAAGAGCTTCATCTTCGCGGTGAATCTACAGGTCCCAGGAAAGGACCAGCATAGCGCGGTGTTCTACTTCGCCGCTGAGGATCCTATCCCATCTGGCTCACTCCTGCACCGGTTCATCAACGGCGACGACTCCTTCCGGAACCAGCGGTTTAAGATCGTGAATCGGATCGTCAAAGGGCCGTGGATCATTGAGAAAACGGTAGGGAATTACAGCGCGTGTTTATTGGGCAAAGCGCTGACGTGTAATTACCATAGAGGAGCAAACTACTTAGAGATTGACGTGGATATCGCCAGCTCGGGGATCGCCAAGGCTATTCTGCGACTGGCATTGAGATATGTGACGAGCGTGACGATCGACATGGGGTTTCTGGTGGAGGCGCAGACAGAGGATGAGTTGCCCGAGAGGTTAGTCGGTGCCGTTAGGATTTGCCAGATGGAAATGTCCTCTGCAACAGTAATCGACGCCACACCTGTTAGCCGGCGGCTTTCCCTTAATTACTCTTGGAGTCTTGGCCCTTACAGATTTGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

300

Amino Acids

33.03

Weight (kDa)

9.25

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 54 - 268 3.5e-79 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 260, 779
AccII CGCG 4 cut(s) 332, 383, 422, 581
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 7 cut(s) 117, 337, 383, 422, 438, 511, 847
AclWI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
AcuI CTGAAG 1 cut(s) 386
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 3 cut(s) 164, 251, 828
AfaI GTAC 1 cut(s) 300
AfeI AGCGCT 1 cut(s) 600
AfiI CCNNNNNNNGG 2 cut(s) 406, 663
AflIII ACRYGT 1 cut(s) 605
AgeI ACCGGT 1 cut(s) 474
AjiI CACGTC 2 cut(s) 606, 646
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 4 cut(s) 30, 289, 372, 660
AluI AGCT 4 cut(s) 30, 289, 372, 660
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
Ama87I CYCGRG 2 cut(s) 661, 764
Aor13HI TCCGGA 1 cut(s) 501
Aor51HI AGCGCT 1 cut(s) 600
AoxI GGCC 3 cut(s) 342, 542, 877
ApeKI GCWGC 1 cut(s) 334
AsiGI ACCGGT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 7 cut(s) 229, 328, 334, 422, 581, 601, 745
AspS9I GGNCC 6 cut(s) 136, 343, 397, 409, 542, 878
AsuC2I CCSGG 2 cut(s) 174, 194
AsuHPI GGTGA 2 cut(s) 159, 397
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 2 cut(s) 661, 764
AvaII GGWCC 3 cut(s) 136, 397, 409
BaeGI GKGCMC 1 cut(s) 263
BamHI GGATCC 2 cut(s) 119, 445
BanI GGYRCC 2 cut(s) 260, 779
BanII GRGCYC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 463, 793
BceAI ACGGC 4 cut(s) 143, 502, 529, 767
BciT130I CCWGG 1 cut(s) 402
BcnI CCSGG 2 cut(s) 174, 194
BcoDI GTCTC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 2 cut(s) 230, 602
BisI GCNGC 3 cut(s) 335, 438, 848
BlsI GCNGC 3 cut(s) 336, 439, 849
Bme1390I CCNGG 3 cut(s) 174, 194, 402
Bme18I GGWCC 3 cut(s) 136, 397, 409
BmeT110I CYCGRG 2 cut(s) 661, 764
BmgBI CACGTC 2 cut(s) 606, 646
BmgT120I GGNCC 6 cut(s) 136, 343, 397, 409, 542, 878
BmiI GGNNCC 6 cut(s) 121, 262, 399, 447, 506, 781
BmrFI CCNGG 3 cut(s) 174, 194, 402
BpmI CTGGAG 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 174, 194
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 3 cut(s) 164, 251, 828
BsaJI CCNNGG 6 cut(s) 112, 193, 352, 400, 545, 672
BsaWI WCCGGW 4 cut(s) 24, 146, 474, 501
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 663
Bse118I RCCGGY 4 cut(s) 47, 253, 474, 843
Bse1I ACTGG 4 cut(s) 98, 272, 279, 693
BseAI TCCGGA 1 cut(s) 501
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 6 cut(s) 112, 193, 352, 400, 545, 672
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 2 cut(s) 406, 663
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 4 cut(s) 98, 272, 279, 693
BseRI GAGGAG 1 cut(s) 636
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 4 cut(s) 332, 383, 422, 581
Bsh1285I CGRYCG 1 cut(s) 720
BshFI GGCC 3 cut(s) 344, 544, 879
BshNI GGYRCC 2 cut(s) 260, 779
BshTI ACCGGT 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 2 cut(s) 661, 764
BslFI GGGAC 3 cut(s) 294, 346, 383
BslI CCNNNNNNNGG 2 cut(s) 406, 663
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 3 cut(s) 294, 346, 383
BsnI GGCC 3 cut(s) 344, 544, 879
BsoBI CYCGRG 2 cut(s) 661, 764
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 32, 263
Bsp13I TCCGGA 1 cut(s) 501
BspACI CCGC 7 cut(s) 117, 337, 383, 422, 438, 511, 847
BspANI GGCC 3 cut(s) 344, 544, 879
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 4 cut(s) 332, 383, 422, 581
BspLI GGNNCC 6 cut(s) 121, 262, 399, 447, 506, 781
BspPI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
BspQI GCTCTTC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 260, 779
BsrFI RCCGGY 4 cut(s) 47, 253, 474, 843
BsrI ACTGG 4 cut(s) 98, 272, 279, 693
BssAI RCCGGY 4 cut(s) 47, 253, 474, 843
BssECI CCNNGG 6 cut(s) 112, 193, 352, 400, 545, 672
BssNI GRCGYC 3 cut(s) 164, 251, 828
BssT1I CCWWGG 3 cut(s) 112, 352, 672
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 158, 565, 820
Bst6I CTCTTC 2 cut(s) 63, 362
BstACI GRCGYC 3 cut(s) 164, 251, 828
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 5 cut(s) 49, 231, 330, 658, 845
BstDEI CTNAG 2 cut(s) 441, 634
BstDSI CCRYGG 1 cut(s) 545
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 4 cut(s) 332, 383, 422, 581
BstH2I RGCGCY 2 cut(s) 230, 602
BstHHI GCGC 7 cut(s) 229, 328, 334, 422, 581, 601, 745
BstMAI GTCTC 1 cut(s) 231
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 3 cut(s) 172, 192, 400
BstSFI CTRYAG 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 4 cut(s) 332, 383, 422, 581
BstV1I GCAGC 1 cut(s) 321
BstX2I RGATCY 4 cut(s) 62, 96, 119, 445
BstYI RGATCY 4 cut(s) 62, 96, 119, 445
BsuRI GGCC 3 cut(s) 344, 544, 879
BtgI CCRYGG 1 cut(s) 545
BtrI CACGTC 2 cut(s) 606, 646
BtsCI GGATG 1 cut(s) 760
Cac8I GCNNGC 5 cut(s) 49, 231, 330, 658, 845
CfoI GCGC 7 cut(s) 229, 328, 334, 422, 581, 601, 745
Cfr10I RCCGGY 4 cut(s) 47, 253, 474, 843
Cfr13I GGNCC 6 cut(s) 136, 343, 397, 409, 542, 878
CseI GACGC 3 cut(s) 153, 259, 836
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 474
CviAII CATG 1 cut(s) 724
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 2 cut(s) 441, 634
Eam1104I CTCTTC 2 cut(s) 63, 362
EarI CTCTTC 2 cut(s) 63, 362
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 112, 352, 672
Eco24I GRGCYC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 3 cut(s) 136, 397, 409
Eco47III AGCGCT 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 661, 764
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 3 cut(s) 112, 352, 672
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 3 cut(s) 112, 352, 672
FaeI CATG 1 cut(s) 727
FaiI YATR 4 cut(s) 417, 618, 702, 725
FaqI GGGAC 3 cut(s) 294, 346, 383
FatI CATG 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 335, 438, 848
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 335, 438, 848
GlaI GCGC 7 cut(s) 228, 327, 333, 421, 580, 600, 744
GluI GCNGC 3 cut(s) 335, 438, 848
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 2 cut(s) 230, 602
HaeIII GGCC 3 cut(s) 344, 544, 879
HgaI GACGC 3 cut(s) 153, 259, 836
HhaI GCGC 7 cut(s) 229, 328, 334, 422, 581, 601, 745
Hin1I GRCGYC 3 cut(s) 164, 251, 828
Hin1II CATG 1 cut(s) 727
Hin6I GCGC 7 cut(s) 227, 326, 332, 420, 579, 599, 743
HinP1I GCGC 7 cut(s) 227, 326, 332, 420, 579, 599, 743
HinfI GANTC 7 cut(s) 71, 104, 388, 494, 526, 871, 893
HphI GGTGA 2 cut(s) 159, 397
Hpy166II GTNNAC 2 cut(s) 75, 136
Hpy188I TCNGA 4 cut(s) 9, 67, 103, 531
Hpy188III TCNNGA 4 cut(s) 60, 311, 502, 523
Hpy8I GTNNAC 2 cut(s) 75, 136
Hpy99I CGWCG 4 cut(s) 38, 41, 494, 830
HpyAV CCTTC 2 cut(s) 334, 508
HpyCH4III ACNGT 3 cut(s) 158, 565, 820
HpyCH4IV ACGT 3 cut(s) 132, 605, 645
HpyCH4V TGCA 2 cut(s) 472, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 2 cut(s) 441, 634
HpySE526I ACGT 3 cut(s) 132, 605, 645
Hsp92I GRCGYC 3 cut(s) 164, 251, 828
Hsp92II CATG 1 cut(s) 727
HspAI GCGC 7 cut(s) 227, 326, 332, 420, 579, 599, 743
Kpn2I TCCGGA 1 cut(s) 501
KroI GCCGGC 2 cut(s) 47, 843
KroNI GCCGGC 2 cut(s) 49, 845
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 4 cut(s) 27, 35, 62, 623
Lsp1109I GCAGC 1 cut(s) 321
MaeII ACGT 3 cut(s) 132, 605, 645
MaeIII GTNAC 3 cut(s) 165, 703, 712
MboII GAAGA 3 cut(s) 80, 370, 379
MflI RGATCY 4 cut(s) 62, 96, 119, 445
MhlI GDGCHC 2 cut(s) 32, 263
MluCI AATT 3 cut(s) 571, 610, 859
MlyI GAGTC 4 cut(s) 80, 113, 488, 880
MmeI TCCRAC 2 cut(s) 32, 108
MnlI CCTC 9 cut(s) 91, 149, 180, 436, 614, 733, 745, 762, 820
MroI TCCGGA 1 cut(s) 501
MroNI GCCGGC 2 cut(s) 47, 843
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 3 cut(s) 516, 858, 898
MspA1I CMGCKG 2 cut(s) 440, 511
MspR9I CCNGG 3 cut(s) 174, 194, 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 4 cut(s) 332, 383, 422, 581
MwoI GCNNNNNNNGC 1 cut(s) 334
NaeI GCCGGC 2 cut(s) 49, 845
NciI CCSGG 2 cut(s) 174, 194
NgoMIV GCCGGC 2 cut(s) 47, 843
NlaIII CATG 1 cut(s) 727
NlaIV GGNNCC 6 cut(s) 121, 262, 399, 447, 506, 781
NmuCI GTSAC 3 cut(s) 165, 703, 712
NspV TTCGAA 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 713
PdiI GCCGGC 2 cut(s) 49, 845
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 388, 526, 893
PinAI ACCGGT 1 cut(s) 474
PkrI GCNGC 3 cut(s) 336, 439, 849
Ple19I CGATCG 1 cut(s) 720
PleI GAGTC 4 cut(s) 79, 112, 488, 879
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 4 cut(s) 79, 112, 488, 879
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 400
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 6 cut(s) 121, 262, 399, 447, 506, 781
PspPI GGNCC 6 cut(s) 136, 343, 397, 409, 542, 878
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 4 cut(s) 62, 96, 119, 445
PvuI CGATCG 1 cut(s) 720
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 516, 858, 898
SatI GCNGC 3 cut(s) 335, 438, 848
Sau96I GGNCC 6 cut(s) 136, 343, 397, 409, 542, 878
SchI GAGTC 4 cut(s) 80, 113, 488, 880
ScrFI CCNGG 3 cut(s) 174, 194, 402
SduI GDGCHC 2 cut(s) 32, 263
SfcI CTRYAG 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 284
SgrAI CRCCGGYG 1 cut(s) 253
SinI GGWCC 3 cut(s) 136, 397, 409
Sse9I AATT 3 cut(s) 571, 610, 859
SsiI CCGC 7 cut(s) 117, 337, 383, 422, 438, 511, 847
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 172, 192, 400
StyI CCWWGG 3 cut(s) 112, 352, 672
TaaI ACNGT 3 cut(s) 158, 565, 820
TaiI ACGT 3 cut(s) 135, 608, 648
TaqI TCGA 4 cut(s) 39, 284, 720, 825
TasI AATT 3 cut(s) 571, 610, 859
TatI WGTACW 1 cut(s) 298
TauI GCSGC 2 cut(s) 440, 850
TfiI GAWTC 3 cut(s) 388, 526, 893
Tru1I TTAA 3 cut(s) 516, 858, 898
Tru9I TTAA 3 cut(s) 516, 858, 898
TseFI GTSAC 3 cut(s) 165, 703, 712
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 3 cut(s) 165, 703, 712
TspDTI ATGAA 2 cut(s) 364, 469
TspGWI ACGGA 1 cut(s) 22
VpaK11BI GGWCC 3 cut(s) 136, 397, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.