Rh5CG299000

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010107
Physical Location & Seq
Reverse (-)
32933419 .. 32933829
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG299000.1

Sequence Viewer

Length: 411 bp
ATGAAGAGCTGGACCTATCTCGCCGGCGAGTCGAGTTGGGGCGGCTCCTCGACCCGGTCAGAGATTCAAGGGCCCACCTGTAAATGTCCGGCAACAGCCCTGTCGTCGATTGCGCGCGACAGTAGCAGCGACAACGCGAGCCAGGCGGTGTGTCGTCGAAGCGGAAACTGGACGAGTATGGCGGCCGGCCTATTGACGTTCTCTACCGACGAGGACGACGGCATCATTTCTGACCTACTCCAAAACTTCTACTTCGCCGCTGAGGATCCTATTCCATCCGAGTCACTCCTCCACCGGTTCATCAACGGTGACGATTTGTTCCTGAAACACCTGTTCAAGGTCATGAATTGGATCGTGAAAGGGCCGTGGATCATTGAGAAAACAGCGCGTGTTTACTCCGGCGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

136

Amino Acids

14.89

Weight (kDa)

5.26

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 83 - 129 1.7e-07 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 115, 117, 137, 388
AciI CCGC 6 cut(s) 42, 146, 162, 182, 258, 402
AclWI GGATC 4 cut(s) 260, 273, 359, 377
AcoI YGGCCR 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 54, 337
AgeI ACCGGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 68, 337
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 4 cut(s) 260, 273, 359, 377
AoxI GGCC 4 cut(s) 71, 183, 187, 362
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 294
AspLEI GCGC 3 cut(s) 115, 117, 388
AspS9I GGNCC 4 cut(s) 12, 71, 72, 362
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 75
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 235, 349
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 55
BisI GCNGC 4 cut(s) 43, 127, 183, 258
BlsI GCNGC 4 cut(s) 44, 128, 184, 259
Bme1390I CCNGG 2 cut(s) 55, 143
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 4 cut(s) 12, 71, 72, 362
BmiI GGNNCC 3 cut(s) 46, 73, 267
BmrFI CCNGG 2 cut(s) 55, 143
BmsI GCATC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 337
Bse118I RCCGGY 3 cut(s) 23, 185, 294
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 54, 337
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 173
BsePI GCGCGC 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 37, 278
BseSI GKGCMC 1 cut(s) 75
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 138
Bsh1236I CGCG 4 cut(s) 115, 117, 137, 388
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 73, 185, 189, 364
BshTI ACCGGT 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 6 cut(s) 24, 55, 89, 186, 295, 399
BslI CCNNNNNNNGG 2 cut(s) 54, 337
BsnI GGCC 4 cut(s) 73, 185, 189, 364
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 265, 351, 369
BspACI CCGC 6 cut(s) 42, 146, 162, 182, 258, 402
BspANI GGCC 4 cut(s) 73, 185, 189, 364
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 4 cut(s) 115, 117, 137, 388
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 46, 73, 267
BspPI GGATC 4 cut(s) 260, 273, 359, 377
BsrFI RCCGGY 3 cut(s) 23, 185, 294
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 3 cut(s) 23, 185, 294
BssECI CCNNGG 1 cut(s) 365
BssHII GCGCGC 1 cut(s) 113
BssMI GATC 3 cut(s) 265, 351, 369
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 122, 308
BstC8I GCNNGC 4 cut(s) 25, 115, 139, 187
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 365
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 4 cut(s) 115, 117, 137, 388
BstHHI GCGC 3 cut(s) 115, 117, 388
BstKTI GATC 3 cut(s) 268, 354, 372
BstMBI GATC 3 cut(s) 265, 351, 369
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 123, 143
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 53, 141
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 4 cut(s) 115, 117, 137, 388
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 4 cut(s) 73, 185, 189, 364
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 275
Cac8I GCNNGC 4 cut(s) 25, 115, 139, 187
CciI TCATGA 1 cut(s) 342
CfoI GCGC 3 cut(s) 115, 117, 388
Cfr10I RCCGGY 3 cut(s) 23, 185, 294
Cfr13I GGNCC 4 cut(s) 12, 71, 72, 362
CspAI ACCGGT 1 cut(s) 294
CviAII CATG 1 cut(s) 343
CviJI RGCY 8 cut(s) 9, 45, 73, 98, 141, 185, 189, 364
CviKI_1 RGCY 8 cut(s) 9, 45, 73, 98, 141, 185, 189, 364
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 267, 353, 371
DpnII GATC 3 cut(s) 265, 351, 369
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 183
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 346
FaiI YATR 2 cut(s) 179, 344
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 43, 127, 183, 258
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 75
FseI GGCCGGCC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 43, 127, 183, 258
GlaI GCGC 3 cut(s) 114, 116, 387
GluI GCNGC 4 cut(s) 43, 127, 183, 258
HaeIII GGCC 4 cut(s) 73, 185, 189, 364
HapII CCGG 6 cut(s) 24, 55, 89, 186, 295, 399
HhaI GCGC 3 cut(s) 115, 117, 388
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 3 cut(s) 113, 115, 386
HinP1I GCGC 3 cut(s) 113, 115, 386
HinfI GANTC 3 cut(s) 29, 64, 281
HpaII CCGG 6 cut(s) 24, 55, 89, 186, 295, 399
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 61, 232, 280
Hpy188III TCNNGA 3 cut(s) 322, 343, 355
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 4 cut(s) 109, 159, 212, 221
HpyCH4III ACNGT 2 cut(s) 122, 308
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 143
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 3 cut(s) 113, 115, 386
KroI GCCGGC 2 cut(s) 23, 185
KroNI GCCGGC 2 cut(s) 25, 187
Kzo9I GATC 3 cut(s) 265, 351, 369
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 231
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 282, 308
MalI GATC 3 cut(s) 267, 353, 371
MboI GATC 3 cut(s) 265, 351, 369
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 346
MlyI GAGTC 2 cut(s) 38, 290
MnlI CCTC 4 cut(s) 58, 205, 256, 299
MreI CGCCGGCG 1 cut(s) 23
MroNI GCCGGC 2 cut(s) 23, 185
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 6 cut(s) 24, 55, 89, 186, 295, 399
MspR9I CCNGG 2 cut(s) 55, 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 4 cut(s) 115, 117, 137, 388
MwoI GCNNNNNNNGC 2 cut(s) 123, 143
NaeI GCCGGC 2 cut(s) 25, 187
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 265, 351, 369
NgoMIV GCCGGC 2 cut(s) 23, 185
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 3 cut(s) 46, 73, 267
NmuCI GTSAC 2 cut(s) 282, 308
PagI TCATGA 1 cut(s) 342
PauI GCGCGC 1 cut(s) 113
PdiI GCCGGC 2 cut(s) 25, 187
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 294
PkrI GCNGC 4 cut(s) 44, 128, 184, 259
PleI GAGTC 2 cut(s) 37, 289
PpsI GAGTC 2 cut(s) 37, 289
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 46, 73, 267
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 4 cut(s) 12, 71, 72, 362
PsuI RGATCY 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 55
PteI GCGCGC 1 cut(s) 113
RigI GGCCGGCC 1 cut(s) 189
SatI GCNGC 4 cut(s) 43, 127, 183, 258
Sau3AI GATC 3 cut(s) 265, 351, 369
Sau96I GGNCC 4 cut(s) 12, 71, 72, 362
SchI GAGTC 2 cut(s) 38, 290
ScrFI CCNGG 2 cut(s) 55, 143
SduI GDGCHC 1 cut(s) 75
SetI ASST 7 cut(s) 11, 17, 80, 200, 237, 333, 342
SfaNI GCATC 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 12
Sse9I AATT 1 cut(s) 346
SsiI CCGC 6 cut(s) 42, 146, 162, 182, 258, 402
StyD4I CCNGG 2 cut(s) 53, 141
TaaI ACNGT 2 cut(s) 122, 308
TaiI ACGT 1 cut(s) 200
TaqI TCGA 4 cut(s) 32, 50, 107, 157
TasI AATT 1 cut(s) 346
TauI GCSGC 3 cut(s) 45, 185, 260
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 2 cut(s) 282, 308
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 2 cut(s) 282, 308
TspDTI ATGAA 3 cut(s) 17, 289, 359
Tth111I GACNNNGTC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.