Rw6G034690

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010107
Physical Location & Seq
Forward (+)
59366825 .. 59368346
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034690.1

Sequence Viewer

Length: 852 bp
ATGTGTCCGACAAAGCCGAAGCACCGGAGTTCCGTCGTCGATCACGCCGGCAAATGCTCCAGATCCGGAGAGTCCACAACCTCCACCGCCGACTGGATCTCCGAGACAATCCAAGGCGGATCCTTACCCCGCGTGGACCTCCACACTGGAACGAACGGCTGGGCATCACCTCCCGGCGACCTATTCTCTCTCCCGCCCGCCGGAGACTACCTACTGACCCCGGTGGCCACCGACTGGCTCAAATCCAGTTCGAAGCTGGAAAATGTACTGGCCCGTCCCGATAACCGTGTGGCGCAGGCGCTGCGGAAGGCCCAAGCCCAAGGCAAGTCCCTGAAGAGCTTCATCTTCGCTGTGAATCTACAGGTGCCAGGTAAGGACCAGCACAGCGCGGTGTTCTACTTCGCCGCAGAGGATCCCATCCCGTCGGGGTCACTCCTCCACCGGTTCATCAACGGCGACGACGCGTTCCGGAACCAGCGGTTCAAGATCGTGAATCGGATCGTGAAAGGGCCGTGGATCGTTGAGAAAACGGTGGGGAATTACAGCGCGTGTTTGTTGGGGAAAGCGCTGACCTGTAATTACCATAGAGGACCAAACTACTTGGAGATTGACGTGGACATCGCCAGCTCCGGGATCGCCAAGGCCATTCTGCGACTGGCATTGAGATACGTGACGAGCGTGACGATCGACATGGGGTTTCTGGTGGAGGCGCAGACAGAGGATGAGTTGCCCGAGAGGTTAGTCGGTGCCGTTAGGATTTGCCAGATGGAGATGTCCTCCGCAACGGTAATCGACGCGCCGCCGCACCTTTACTCTTGGCACATCTTTCGTTTTGGGAATATATTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

283

Amino Acids

31.06

Weight (kDa)

8.49

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 66 - 257 1.5e-68 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 364, 746
AccB7I CCANNNNNTGG 1 cut(s) 234
AccII CGCG 5 cut(s) 132, 389, 464, 548, 797
AccIII TCCGGA 2 cut(s) 65, 468
AclWI GGATC 9 cut(s) 57, 104, 114, 127, 407, 420, 506, 524, 641
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 1 cut(s) 267
AfeI AGCGCT 1 cut(s) 567
AfiI CCNNNNNNNGG 4 cut(s) 93, 200, 234, 630
AflIII ACRYGT 1 cut(s) 462
AgeI ACCGGT 1 cut(s) 441
AgsI TTSAA 1 cut(s) 484
AjiI CACGTC 1 cut(s) 613
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 256, 339, 627
AluI AGCT 3 cut(s) 256, 339, 627
Alw26I GTCTC 2 cut(s) 98, 198
AlwI GGATC 9 cut(s) 57, 104, 114, 127, 407, 420, 506, 524, 641
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 731
Aor13HI TCCGGA 2 cut(s) 65, 468
Aor51HI AGCGCT 1 cut(s) 567
AoxI GGCC 5 cut(s) 225, 270, 309, 509, 642
ApeKI GCWGC 1 cut(s) 301
AsiGI ACCGGT 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 7 cut(s) 295, 301, 389, 548, 568, 712, 799
AspS9I GGNCC 6 cut(s) 136, 271, 310, 376, 509, 590
AsuC2I CCSGG 3 cut(s) 174, 221, 631
AsuHPI GGTGA 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 3 cut(s) 136, 376, 590
BalI TGGCCA 1 cut(s) 227
BamHI GGATCC 2 cut(s) 119, 412
BanI GGYRCC 2 cut(s) 364, 746
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 425, 760
BceAI ACGGC 4 cut(s) 172, 469, 496, 734
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 3 cut(s) 174, 221, 631
BcoDI GTCTC 2 cut(s) 98, 198
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 2 cut(s) 302, 569
BisI GCNGC 4 cut(s) 302, 405, 800, 803
BlsI GCNGC 4 cut(s) 303, 406, 801, 804
Bme1390I CCNGG 4 cut(s) 174, 221, 369, 631
Bme18I GGWCC 3 cut(s) 136, 376, 590
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 6 cut(s) 136, 271, 310, 376, 509, 590
BmiI GGNNCC 5 cut(s) 121, 366, 414, 473, 748
BmrFI CCNGG 4 cut(s) 174, 221, 369, 631
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 3 cut(s) 174, 221, 631
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 5 cut(s) 112, 219, 319, 512, 639
BsaWI WCCGGW 4 cut(s) 24, 65, 441, 468
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 200, 234, 630
Bse118I RCCGGY 2 cut(s) 47, 441
Bse1I ACTGG 6 cut(s) 98, 151, 239, 246, 273, 660
BseAI TCCGGA 2 cut(s) 65, 468
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 112, 219, 319, 512, 639
BseGI GGATG 2 cut(s) 417, 727
BseLI CCNNNNNNNGG 4 cut(s) 93, 200, 234, 630
BseNI ACTGG 6 cut(s) 98, 151, 239, 246, 273, 660
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 5 cut(s) 132, 389, 464, 548, 797
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 5 cut(s) 227, 272, 311, 511, 644
BshNI GGYRCC 2 cut(s) 364, 746
BshTI ACCGGT 1 cut(s) 441
BsiEI CGRYCG 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 9 cut(s) 25, 48, 66, 174, 201, 221, 442, 469, 630
BslFI GGGAC 2 cut(s) 261, 313
BslI CCNNNNNNNGG 4 cut(s) 93, 200, 234, 630
BsmAI GTCTC 2 cut(s) 98, 198
BsmFI GGGAC 2 cut(s) 261, 313
BsnI GGCC 5 cut(s) 227, 272, 311, 511, 644
BsoBI CYCGRG 1 cut(s) 731
Bsp119I TTCGAA 1 cut(s) 251
Bsp13I TCCGGA 2 cut(s) 65, 468
BspANI GGCC 5 cut(s) 227, 272, 311, 511, 644
BspEI TCCGGA 2 cut(s) 65, 468
BspFNI CGCG 5 cut(s) 132, 389, 464, 548, 797
BspLI GGNNCC 5 cut(s) 121, 366, 414, 473, 748
BspPI GGATC 9 cut(s) 57, 104, 114, 127, 407, 420, 506, 524, 641
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 2 cut(s) 364, 746
BsrFI RCCGGY 2 cut(s) 47, 441
BsrI ACTGG 6 cut(s) 98, 151, 239, 246, 273, 660
BssAI RCCGGY 2 cut(s) 47, 441
BssECI CCNNGG 5 cut(s) 112, 219, 319, 512, 639
BssT1I CCWWGG 3 cut(s) 112, 319, 639
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 287, 532, 787
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 49, 198, 297, 625
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 417, 727
BstFNI CGCG 5 cut(s) 132, 389, 464, 548, 797
BstH2I RGCGCY 2 cut(s) 302, 569
BstHHI GCGC 7 cut(s) 295, 301, 389, 548, 568, 712, 799
BstMAI GTCTC 2 cut(s) 98, 198
BstMCI CGRYCG 1 cut(s) 687
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 4 cut(s) 172, 219, 367, 629
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 5 cut(s) 132, 389, 464, 548, 797
BstV1I GCAGC 1 cut(s) 288
BstX2I RGATCY 4 cut(s) 62, 96, 119, 412
BstYI RGATCY 4 cut(s) 62, 96, 119, 412
BsuRI GGCC 5 cut(s) 227, 272, 311, 511, 644
BtgI CCRYGG 1 cut(s) 512
BtgZI GCGATG 1 cut(s) 604
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 2 cut(s) 417, 727
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 4 cut(s) 49, 198, 297, 625
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 7 cut(s) 295, 301, 389, 548, 568, 712, 799
Cfr10I RCCGGY 2 cut(s) 47, 441
Cfr13I GGNCC 6 cut(s) 136, 271, 310, 376, 509, 590
CseI GACGC 2 cut(s) 470, 803
Csp6I GTAC 1 cut(s) 266
CspAI ACCGGT 1 cut(s) 441
CviAII CATG 1 cut(s) 691
CviQI GTAC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 3 cut(s) 112, 319, 639
Eco47I GGWCC 3 cut(s) 136, 376, 590
Eco47III AGCGCT 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 3 cut(s) 112, 319, 639
ErhI CCWWGG 3 cut(s) 112, 319, 639
FaeI CATG 1 cut(s) 694
FaiI YATR 3 cut(s) 585, 692, 842
FaqI GGGAC 2 cut(s) 261, 313
FatI CATG 1 cut(s) 690
FauI CCCGC 3 cut(s) 137, 201, 205
Fnu4HI GCNGC 4 cut(s) 302, 405, 800, 803
FokI GGATG 2 cut(s) 404, 734
Fsp4HI GCNGC 4 cut(s) 302, 405, 800, 803
GlaI GCGC 7 cut(s) 294, 300, 388, 547, 567, 711, 798
GluI GCNGC 4 cut(s) 302, 405, 800, 803
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 2 cut(s) 302, 569
HaeIII GGCC 5 cut(s) 227, 272, 311, 511, 644
HapII CCGG 9 cut(s) 25, 48, 66, 174, 201, 221, 442, 469, 630
HgaI GACGC 2 cut(s) 470, 803
HhaI GCGC 7 cut(s) 295, 301, 389, 548, 568, 712, 799
Hin1II CATG 1 cut(s) 694
Hin6I GCGC 7 cut(s) 293, 299, 387, 546, 566, 710, 797
HinP1I GCGC 7 cut(s) 293, 299, 387, 546, 566, 710, 797
HinfI GANTC 3 cut(s) 71, 355, 493
HpaII CCGG 9 cut(s) 25, 48, 66, 174, 201, 221, 442, 469, 630
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 3 cut(s) 75, 136, 616
Hpy188I TCNGA 3 cut(s) 9, 103, 498
Hpy188III TCNNGA 7 cut(s) 60, 66, 278, 469, 484, 490, 502
Hpy8I GTNNAC 3 cut(s) 75, 136, 616
Hpy99I CGWCG 6 cut(s) 38, 41, 427, 461, 464, 797
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 3 cut(s) 287, 532, 787
HpyCH4IV ACGT 2 cut(s) 612, 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpySE526I ACGT 2 cut(s) 612, 669
Hsp92II CATG 1 cut(s) 694
HspAI GCGC 7 cut(s) 293, 299, 387, 546, 566, 710, 797
Kpn2I TCCGGA 2 cut(s) 65, 468
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 2 cut(s) 62, 632
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 612, 669
MaeIII GTNAC 3 cut(s) 429, 670, 679
MboII GAAGA 2 cut(s) 337, 346
MflI RGATCY 4 cut(s) 62, 96, 119, 412
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 538, 577
MluI ACGCGT 1 cut(s) 462
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 2 cut(s) 65, 468
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 9 cut(s) 25, 48, 66, 174, 201, 221, 442, 469, 630
MspR9I CCNGG 4 cut(s) 174, 221, 369, 631
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 5 cut(s) 132, 389, 464, 548, 797
MwoI GCNNNNNNNGC 1 cut(s) 301
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 174, 221, 631
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 5 cut(s) 121, 366, 414, 473, 748
NmuCI GTSAC 3 cut(s) 429, 670, 679
NspV TTCGAA 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 680
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 355, 493
PflMI CCANNNNNTGG 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 629
PinAI ACCGGT 1 cut(s) 441
PkrI GCNGC 4 cut(s) 303, 406, 801, 804
Ple19I CGATCG 1 cut(s) 687
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 5 cut(s) 121, 366, 414, 473, 748
PspPI GGNCC 6 cut(s) 136, 271, 310, 376, 509, 590
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 4 cut(s) 62, 96, 119, 412
PvuI CGATCG 1 cut(s) 687
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 329
SatI GCNGC 4 cut(s) 302, 405, 800, 803
Sau96I GGNCC 6 cut(s) 136, 271, 310, 376, 509, 590
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 4 cut(s) 174, 221, 369, 631
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 3 cut(s) 136, 376, 590
Sse9I AATT 2 cut(s) 538, 577
StyD4I CCNGG 4 cut(s) 172, 219, 367, 629
StyI CCWWGG 3 cut(s) 112, 319, 639
TaaI ACNGT 3 cut(s) 287, 532, 787
TaiI ACGT 2 cut(s) 615, 672
TaqI TCGA 4 cut(s) 39, 251, 687, 792
TasI AATT 2 cut(s) 538, 577
TatI WGTACW 1 cut(s) 265
TauI GCSGC 3 cut(s) 407, 802, 805
TfiI GAWTC 2 cut(s) 355, 493
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 3 cut(s) 429, 670, 679
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 3 cut(s) 429, 670, 679
TspDTI ATGAA 2 cut(s) 331, 436
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 3 cut(s) 136, 376, 590
XcmI CCANNNNNNNNNTGG 2 cut(s) 253, 652
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.