Rh6DG397400

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010107
Physical Location & Seq
Forward (+)
58809091 .. 58819509
10419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG397400.1

Sequence Viewer

Length: 990 bp
ATGGTTCTTATCATACACACCGGTGTAGCCATCCTATTGAGGTTTCCACTCTTCACTTGTATAGGGAACAGTCGCACCGAGAAAACCAAAACCTGGGAGAGTAGTATGTGTCCGACAAAGCCGAAGCACCGGAGTTCCGTCGTCGATCACGCCGGCAAATGCTCCAGATCCGGAGAGTCCACAACCTCCACGGCCGACTGGATCTCCGAGACAATCCAAGGCGGATCCTTACCCCACGTCGACCTCCACACCGGAACGAACGGCTGGGCATCACCTCCCGGCGACCTATTCTCTCTCCGTGGAAAAAACTACTTGACAAGACGACAAAAAGCGCCCGCCGGAGACTACCTACTGACCCCGGTGGCCACCGACTGGCTCAAATCCAGTTCGAAGCTGGAAAATGTACTCGCCCGTCCCGATAACCGTGTGGCGCACGCGCTGCGGAAGGCCCAAGCCCAAGGCAAGTCCCTGAAGAGCTTCATCTTCGCTGTGAATCTGCAGGTGCCAGGTAAGGACCAGCACAGCGCGGTGTTCTACTTCGCCGCAGAGGATCCCATCCCGTCGGGGTCACTCCTCCACCGGTTCATCAACGGCGACGACGCGTTCCGGAACCAGCGGCTCAAGATCGTGAATCGGATCGTGAAAGGGCCGTGGATCGTTGAGAAAACGGTGGGGAATTACAGCGCGTGTTTGTTGGGGAAAGCGCTGACGTGTAATTACCATAGAGGACCAAACTACTTGGAGATTGACGTGGATATCGCCAGCTCCGGGATCGCCAAGGCCATTCTGCGACTGGCATTGAGATACGTGACGAGCGTGACGATCGACATGGGGTTTCTGGTGGAGGCGCAGACAGAGGATGAGTTGCCCGAGAGGTTAGTCGGTGCCGTTAGGATTTGCCAGATGGAGATGTCCTCCGCAACGGTAATCGACGCGCCACCGCACGTCGCTCGTGCCCAGAGTTTTGCCAGGGTTAATCACAACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

329

Amino Acids

36.11

Weight (kDa)

9.31

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 89 - 303 2.1e-79 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 2 cut(s) 502, 884
AccB7I CCANNNNNTGG 2 cut(s) 93, 372
AccI GTMKAC 1 cut(s) 240
AccII CGCG 5 cut(s) 437, 527, 602, 686, 935
AccIII TCCGGA 2 cut(s) 170, 606
AciI CCGC 8 cut(s) 222, 336, 442, 527, 543, 616, 918, 941
AclWI GGATC 9 cut(s) 162, 209, 219, 232, 545, 558, 644, 662, 779
AcoI YGGCCR 2 cut(s) 192, 363
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 405
AfeI AGCGCT 1 cut(s) 705
AfiI CCNNNNNNNGG 3 cut(s) 93, 372, 768
AflIII ACRYGT 2 cut(s) 600, 710
AgeI ACCGGT 2 cut(s) 20, 579
AjiI CACGTC 4 cut(s) 238, 711, 751, 946
AjnI CCWGG 3 cut(s) 92, 505, 968
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 3 cut(s) 394, 477, 765
AluI AGCT 3 cut(s) 394, 477, 765
Alw26I GTCTC 2 cut(s) 203, 336
AlwI GGATC 9 cut(s) 162, 209, 219, 232, 545, 558, 644, 662, 779
Ama87I CYCGRG 1 cut(s) 869
Aor13HI TCCGGA 2 cut(s) 170, 606
Aor51HI AGCGCT 1 cut(s) 705
AoxI GGCC 5 cut(s) 192, 363, 447, 647, 780
ApeKI GCWGC 1 cut(s) 439
AsiGI ACCGGT 2 cut(s) 20, 579
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 8 cut(s) 334, 433, 439, 527, 686, 706, 850, 937
AspS9I GGNCC 4 cut(s) 448, 514, 647, 728
AsuC2I CCSGG 3 cut(s) 279, 359, 769
AsuHPI GGTGA 1 cut(s) 264
AsuII TTCGAA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 869
AvaII GGWCC 2 cut(s) 514, 728
BaeGI GKGCMC 1 cut(s) 958
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 2 cut(s) 224, 550
BanI GGYRCC 2 cut(s) 502, 884
BauI CACGAG 1 cut(s) 951
BbvI GCAGC 1 cut(s) 426
BccI CCATC 3 cut(s) 38, 563, 898
BceAI ACGGC 5 cut(s) 207, 277, 607, 634, 872
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 3 cut(s) 94, 507, 970
BcnI CCSGG 3 cut(s) 279, 359, 769
BcoDI GTCTC 2 cut(s) 203, 336
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 2 cut(s) 335, 707
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 3 cut(s) 440, 543, 617
BlsI GCNGC 3 cut(s) 441, 544, 618
Bme1390I CCNGG 6 cut(s) 94, 279, 359, 507, 769, 970
Bme18I GGWCC 2 cut(s) 514, 728
BmeT110I CYCGRG 1 cut(s) 869
BmgBI CACGTC 4 cut(s) 238, 711, 751, 946
BmgT120I GGNCC 4 cut(s) 448, 514, 647, 728
BmiI GGNNCC 5 cut(s) 226, 504, 552, 611, 886
BmrFI CCNGG 6 cut(s) 94, 279, 359, 507, 769, 970
BmsI GCATC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpmI CTGGAG 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 3 cut(s) 279, 359, 769
BsaAI YACGTR 1 cut(s) 808
BsaJI CCNNGG 9 cut(s) 93, 189, 217, 298, 357, 457, 650, 777, 969
BsaWI WCCGGW 6 cut(s) 20, 129, 170, 251, 579, 606
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 372, 768
Bse118I RCCGGY 3 cut(s) 20, 152, 579
Bse1I ACTGG 4 cut(s) 203, 377, 384, 798
BseAI TCCGGA 2 cut(s) 170, 606
BseBI CCWGG 3 cut(s) 94, 507, 970
BseDI CCNNGG 9 cut(s) 93, 189, 217, 298, 357, 457, 650, 777, 969
BseGI GGATG 3 cut(s) 30, 555, 865
BseLI CCNNNNNNNGG 3 cut(s) 93, 372, 768
BseNI ACTGG 4 cut(s) 203, 377, 384, 798
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 958
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 5 cut(s) 437, 527, 602, 686, 935
Bsh1285I CGRYCG 2 cut(s) 195, 825
BshFI GGCC 5 cut(s) 194, 365, 449, 649, 782
BshNI GGYRCC 2 cut(s) 502, 884
BshTI ACCGGT 2 cut(s) 20, 579
BsiEI CGRYCG 2 cut(s) 195, 825
BsiHKCI CYCGRG 1 cut(s) 869
BslFI GGGAC 2 cut(s) 399, 451
BslI CCNNNNNNNGG 3 cut(s) 93, 372, 768
BsmAI GTCTC 2 cut(s) 203, 336
BsmFI GGGAC 2 cut(s) 399, 451
BsnI GGCC 5 cut(s) 194, 365, 449, 649, 782
BsoBI CYCGRG 1 cut(s) 869
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 958
Bsp13I TCCGGA 2 cut(s) 170, 606
BspACI CCGC 8 cut(s) 222, 336, 442, 527, 543, 616, 918, 941
BspANI GGCC 5 cut(s) 194, 365, 449, 649, 782
BspEI TCCGGA 2 cut(s) 170, 606
BspFNI CGCG 5 cut(s) 437, 527, 602, 686, 935
BspLI GGNNCC 5 cut(s) 226, 504, 552, 611, 886
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 9 cut(s) 162, 209, 219, 232, 545, 558, 644, 662, 779
BspQI GCTCTTC 1 cut(s) 467
BspT104I TTCGAA 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 502, 884
BsrFI RCCGGY 3 cut(s) 20, 152, 579
BsrI ACTGG 4 cut(s) 203, 377, 384, 798
BssAI RCCGGY 3 cut(s) 20, 152, 579
BssECI CCNNGG 9 cut(s) 93, 189, 217, 298, 357, 457, 650, 777, 969
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 3 cut(s) 217, 457, 777
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 3 cut(s) 94, 507, 970
Bst4CI ACNGT 5 cut(s) 71, 425, 670, 925, 986
Bst6I CTCTTC 2 cut(s) 56, 467
BstAPI GCANNNNNTGC 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 4 cut(s) 154, 336, 435, 763
BstDSI CCRYGG 3 cut(s) 189, 298, 650
BstF5I GGATG 3 cut(s) 30, 555, 865
BstFNI CGCG 5 cut(s) 437, 527, 602, 686, 935
BstH2I RGCGCY 2 cut(s) 335, 707
BstHHI GCGC 8 cut(s) 334, 433, 439, 527, 686, 706, 850, 937
BstMAI GTCTC 2 cut(s) 203, 336
BstMCI CGRYCG 2 cut(s) 195, 825
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 3 cut(s) 94, 507, 970
BstSCI CCNGG 6 cut(s) 92, 277, 357, 505, 767, 968
BstSFI CTRYAG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 5 cut(s) 437, 527, 602, 686, 935
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 4 cut(s) 167, 201, 224, 550
BstYI RGATCY 4 cut(s) 167, 201, 224, 550
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 5 cut(s) 194, 365, 449, 649, 782
BtgI CCRYGG 3 cut(s) 189, 298, 650
BtrI CACGTC 4 cut(s) 238, 711, 751, 946
BtsCI GGATG 3 cut(s) 30, 555, 865
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 4 cut(s) 154, 336, 435, 763
CfoI GCGC 8 cut(s) 334, 433, 439, 527, 686, 706, 850, 937
Cfr10I RCCGGY 3 cut(s) 20, 152, 579
Cfr13I GGNCC 4 cut(s) 448, 514, 647, 728
CseI GACGC 2 cut(s) 608, 941
Csp6I GTAC 1 cut(s) 404
CspAI ACCGGT 2 cut(s) 20, 579
CviAII CATG 1 cut(s) 829
CviQI GTAC 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 192, 363
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 56, 467
EarI CTCTTC 2 cut(s) 56, 467
EciI GGCGGA 1 cut(s) 237
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 217, 457, 777
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 514, 728
Eco47III AGCGCT 1 cut(s) 705
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 869
EcoRII CCWGG 3 cut(s) 92, 505, 968
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 217, 457, 777
ErhI CCWWGG 3 cut(s) 217, 457, 777
FaeI CATG 1 cut(s) 832
FaiI YATR 5 cut(s) 14, 62, 107, 723, 830
FaqI GGGAC 2 cut(s) 399, 451
FatI CATG 1 cut(s) 828
FauI CCCGC 1 cut(s) 343
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 440, 543, 617
FokI GGATG 3 cut(s) 17, 542, 872
Fsp4HI GCNGC 3 cut(s) 440, 543, 617
GlaI GCGC 8 cut(s) 333, 432, 438, 526, 685, 705, 849, 936
GluI GCNGC 3 cut(s) 440, 543, 617
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 2 cut(s) 335, 707
HaeIII GGCC 5 cut(s) 194, 365, 449, 649, 782
HgaI GACGC 2 cut(s) 608, 941
HhaI GCGC 8 cut(s) 334, 433, 439, 527, 686, 706, 850, 937
Hin1II CATG 1 cut(s) 832
Hin6I GCGC 8 cut(s) 332, 431, 437, 525, 684, 704, 848, 935
HinP1I GCGC 8 cut(s) 332, 431, 437, 525, 684, 704, 848, 935
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 176, 493, 631
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 2 cut(s) 180, 241
Hpy188I TCNGA 3 cut(s) 114, 208, 636
Hpy188III TCNNGA 7 cut(s) 165, 171, 416, 607, 622, 628, 640
Hpy8I GTNNAC 2 cut(s) 180, 241
Hpy99I CGWCG 8 cut(s) 143, 146, 242, 565, 599, 602, 935, 950
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 5 cut(s) 71, 425, 670, 925, 986
HpyCH4IV ACGT 5 cut(s) 237, 710, 750, 807, 945
HpyCH4V TGCA 1 cut(s) 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpySE526I ACGT 5 cut(s) 237, 710, 750, 807, 945
Hsp92II CATG 1 cut(s) 832
HspAI GCGC 8 cut(s) 332, 431, 437, 525, 684, 704, 848, 935
Kpn2I TCCGGA 2 cut(s) 170, 606
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 2 cut(s) 167, 770
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 1 cut(s) 278
MaeII ACGT 5 cut(s) 237, 710, 750, 807, 945
MaeIII GTNAC 3 cut(s) 567, 808, 817
MboII GAAGA 3 cut(s) 43, 475, 484
MflI RGATCY 4 cut(s) 167, 201, 224, 550
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 676, 715
MluI ACGCGT 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 365
MroI TCCGGA 2 cut(s) 170, 606
MroNI GCCGGC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 616
MspR9I CCNGG 6 cut(s) 94, 279, 359, 507, 769, 970
MvaI CCWGG 3 cut(s) 94, 507, 970
MvnI CGCG 5 cut(s) 437, 527, 602, 686, 935
MwoI GCNNNNNNNGC 1 cut(s) 439
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 3 cut(s) 279, 359, 769
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 832
NlaIV GGNNCC 5 cut(s) 226, 504, 552, 611, 886
NmuCI GTSAC 3 cut(s) 567, 808, 817
NspV TTCGAA 1 cut(s) 389
OliI CACNNNNGTG 1 cut(s) 21
PaqCI CACCTGC 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 3 cut(s) 414, 813, 818
PdiI GCCGGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 493, 631
PflMI CCANNNNNTGG 2 cut(s) 93, 372
PfoI TCCNGGA 1 cut(s) 767
PinAI ACCGGT 2 cut(s) 20, 579
PkrI GCNGC 3 cut(s) 441, 544, 618
Ple19I CGATCG 1 cut(s) 825
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 808
Psp6I CCWGG 3 cut(s) 92, 505, 968
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 3 cut(s) 92, 505, 968
PspN4I GGNNCC 5 cut(s) 226, 504, 552, 611, 886
PspPI GGNCC 4 cut(s) 448, 514, 647, 728
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 4 cut(s) 167, 201, 224, 550
PvuI CGATCG 1 cut(s) 825
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 21
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 3 cut(s) 440, 543, 617
Sau96I GGNCC 4 cut(s) 448, 514, 647, 728
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 6 cut(s) 94, 279, 359, 507, 769, 970
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 497
SfuI TTCGAA 1 cut(s) 389
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 2 cut(s) 514, 728
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 2 cut(s) 676, 715
SsiI CCGC 8 cut(s) 222, 336, 442, 527, 543, 616, 918, 941
StyD4I CCNGG 6 cut(s) 92, 277, 357, 505, 767, 968
StyI CCWWGG 3 cut(s) 217, 457, 777
TaaI ACNGT 5 cut(s) 71, 425, 670, 925, 986
TaiI ACGT 5 cut(s) 240, 713, 753, 810, 948
TaqI TCGA 5 cut(s) 144, 240, 389, 825, 930
TasI AATT 2 cut(s) 676, 715
TatI WGTACW 1 cut(s) 403
TauI GCSGC 2 cut(s) 545, 619
TfiI GAWTC 2 cut(s) 493, 631
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TseFI GTSAC 3 cut(s) 567, 808, 817
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 3 cut(s) 567, 808, 817
TspDTI ATGAA 2 cut(s) 469, 574
TspGWI ACGGA 2 cut(s) 127, 287
Van91I CCANNNNNTGG 2 cut(s) 93, 372
VpaK11BI GGWCC 2 cut(s) 514, 728
XcmI CCANNNNNNNNNTGG 2 cut(s) 391, 790
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.