Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007483.1

Orthogroup ID

OG0010107

Physical Location & Seq

Genomic Coordinates Forward (+)

9307 .. 10197

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007483.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgtgtccgacaaagccgaagcaccggagttccgtcgtcgatcacgccggcaaatgctccagatccggagagtccacaatctccaccgccgactggatctccgagacaatccaaggcggatccttaccccacgtcgacctccacactggaacgaacggctgggcatcacctcccggcgacctattctctctccgtggaaaaaactacttgacaagacgacaaaaagcgcccgccggagactacctactgaccccggtggccaccgactggctcaaatccagttcgaagctggaaaatgtactcgcccgtcccgataaccgtgtggcgcaggcgctgcggaaggcccaagcccaaggcaagtccctgaagagcttcatcttcgctgtgaatctacaggtgccaggtaaggaccagcacagcgcggtgttctacttcgccgcagaggatcccatcccgtcggggtcactcctccaccggttcatcaacggcgacgacgcgttccggaaccagcggttcaagatcgtgaatcggatcgtgaaagggccgtggatcgttgagaaaacggtggggaattacagcgcgtgtttgttggggaaagcgctgacctgtaattaccatagaggaccaaactacttggagattgacgtggacatcgccagctccgggatcgccaaggccattctgcgactggcattgagatacgtgacgagcgtgacgatcgacatggggtttctggtggaggcgcagacagaggatgagttgcccgagaggttagtcggtgccgttaggatttgccagatggagatgtcctccgcaacggtaatcgacgcgccgccgcacgtcgctcgtgcccagagttttgccaatgccagggttaatcacaactgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

296

Amino Acids

32.38

Weight (kDa)

9.22

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10750
fragaria_vesca	FvH4_2g41380
malus_domestica	MD08G1050500.v1.1 MD11G1259000.v1.1 MD15G1044400.v1.1
prunus_persica	Prupe.1G398300_v2.0.a1
pyrus_communis	pycom08g04180
rosa_chinensis	RchiOBHm_Chr6g0299091
rosa_laevigata	RLG00000011462 RLG00000033871
rosa_multiflora	Rmu_sc0005120.1_g000010 Rmu_sc0007483.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169010
rosa_rugosa	Rorug06G0285300
rosa_samantha	Rh2CG134900 Rh2DG135400 Rh5CG299000 Rh6AG396200 Rh6CG410800 Rh6DG397400
rosa_wichuraiana	Rw6G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	397, 779
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	4 cut(s)	422, 497, 581, 830
AccIII	TCCGGA	2 cut(s)	65, 501
AclWI	GGATC	9 cut(s)	57, 104, 114, 127, 440, 453, 539, 557, 674
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	600
AfiI	CCNNNNNNNGG	4 cut(s)	93, 267, 663, 870
AflIII	ACRYGT	1 cut(s)	495
AgeI	ACCGGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	517
AjiI	CACGTC	3 cut(s)	133, 646, 841
AjnI	CCWGG	2 cut(s)	400, 869
AluBI	AGCT	3 cut(s)	289, 372, 660
AluI	AGCT	3 cut(s)	289, 372, 660
Alw26I	GTCTC	2 cut(s)	98, 231
AlwI	GGATC	9 cut(s)	57, 104, 114, 127, 440, 453, 539, 557, 674
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	764
Aor13HI	TCCGGA	2 cut(s)	65, 501
Aor51HI	AGCGCT	1 cut(s)	600
AoxI	GGCC	4 cut(s)	258, 342, 542, 675
ApeKI	GCWGC	1 cut(s)	334
AsiGI	ACCGGT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	8 cut(s)	229, 328, 334, 422, 581, 601, 745, 832
AspS9I	GGNCC	4 cut(s)	343, 409, 542, 623
AsuC2I	CCSGG	3 cut(s)	174, 254, 664
AsuHPI	GGTGA	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	2 cut(s)	409, 623
BaeGI	GKGCMC	1 cut(s)	853
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	2 cut(s)	119, 445
BanI	GGYRCC	2 cut(s)	397, 779
BauI	CACGAG	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	458, 793
BceAI	ACGGC	4 cut(s)	172, 502, 529, 767
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	402, 871
BcnI	CCSGG	3 cut(s)	174, 254, 664
BcoDI	GTCTC	2 cut(s)	98, 231
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	3 cut(s)	230, 335, 602
BisI	GCNGC	4 cut(s)	335, 438, 833, 836
BlsI	GCNGC	4 cut(s)	336, 439, 834, 837
Bme1390I	CCNGG	5 cut(s)	174, 254, 402, 664, 871
Bme18I	GGWCC	2 cut(s)	409, 623
BmeT110I	CYCGRG	1 cut(s)	764
BmgBI	CACGTC	3 cut(s)	133, 646, 841
BmgT120I	GGNCC	4 cut(s)	343, 409, 542, 623
BmiI	GGNNCC	5 cut(s)	121, 399, 447, 506, 781
BmrFI	CCNGG	5 cut(s)	174, 254, 402, 664, 871
BmsI	GCATC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	284
BpuMI	CCSGG	3 cut(s)	174, 254, 664
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	7 cut(s)	112, 193, 252, 352, 545, 672, 870
BsaWI	WCCGGW	4 cut(s)	24, 65, 474, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 267, 663, 870
Bse118I	RCCGGY	2 cut(s)	47, 474
Bse1I	ACTGG	5 cut(s)	98, 151, 272, 279, 693
BseAI	TCCGGA	2 cut(s)	65, 501
BseBI	CCWGG	2 cut(s)	402, 871
BseDI	CCNNGG	7 cut(s)	112, 193, 252, 352, 545, 672, 870
BseGI	GGATG	2 cut(s)	450, 760
BseLI	CCNNNNNNNGG	4 cut(s)	93, 267, 663, 870
BseNI	ACTGG	5 cut(s)	98, 151, 272, 279, 693
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	853
BseXI	GCAGC	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	4 cut(s)	422, 497, 581, 830
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	260, 344, 544, 677
BshNI	GGYRCC	2 cut(s)	397, 779
BshTI	ACCGGT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	720
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	9 cut(s)	25, 48, 66, 174, 234, 254, 475, 502, 663
BslFI	GGGAC	2 cut(s)	294, 346
BslI	CCNNNNNNNGG	4 cut(s)	93, 267, 663, 870
BsmAI	GTCTC	2 cut(s)	98, 231
BsmFI	GGGAC	2 cut(s)	294, 346
BsnI	GGCC	4 cut(s)	260, 344, 544, 677
BsoBI	CYCGRG	1 cut(s)	764
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp13I	TCCGGA	2 cut(s)	65, 501
BspANI	GGCC	4 cut(s)	260, 344, 544, 677
BspEI	TCCGGA	2 cut(s)	65, 501
BspFNI	CGCG	4 cut(s)	422, 497, 581, 830
BspLI	GGNNCC	5 cut(s)	121, 399, 447, 506, 781
BspPI	GGATC	9 cut(s)	57, 104, 114, 127, 440, 453, 539, 557, 674
BspQI	GCTCTTC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	397, 779
BsrFI	RCCGGY	2 cut(s)	47, 474
BsrI	ACTGG	5 cut(s)	98, 151, 272, 279, 693
BssAI	RCCGGY	2 cut(s)	47, 474
BssECI	CCNNGG	7 cut(s)	112, 193, 252, 352, 545, 672, 870
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	3 cut(s)	112, 352, 672
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	2 cut(s)	402, 871
Bst4CI	ACNGT	4 cut(s)	320, 565, 820, 887
Bst6I	CTCTTC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	4 cut(s)	49, 231, 330, 658
BstDSI	CCRYGG	2 cut(s)	193, 545
BstF5I	GGATG	2 cut(s)	450, 760
BstFNI	CGCG	4 cut(s)	422, 497, 581, 830
BstH2I	RGCGCY	3 cut(s)	230, 335, 602
BstHHI	GCGC	8 cut(s)	229, 328, 334, 422, 581, 601, 745, 832
BstMAI	GTCTC	2 cut(s)	98, 231
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	402, 871
BstSCI	CCNGG	5 cut(s)	172, 252, 400, 662, 869
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	1 cut(s)	853
BstUI	CGCG	4 cut(s)	422, 497, 581, 830
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	4 cut(s)	62, 96, 119, 445
BstYI	RGATCY	4 cut(s)	62, 96, 119, 445
BsuRI	GGCC	4 cut(s)	260, 344, 544, 677
BtgI	CCRYGG	2 cut(s)	193, 545
BtgZI	GCGATG	1 cut(s)	637
BtrI	CACGTC	3 cut(s)	133, 646, 841
BtsCI	GGATG	2 cut(s)	450, 760
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	4 cut(s)	49, 231, 330, 658
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	8 cut(s)	229, 328, 334, 422, 581, 601, 745, 832
Cfr10I	RCCGGY	2 cut(s)	47, 474
Cfr13I	GGNCC	4 cut(s)	343, 409, 542, 623
CseI	GACGC	2 cut(s)	503, 836
Csp6I	GTAC	1 cut(s)	299
CspAI	ACCGGT	1 cut(s)	474
CviAII	CATG	1 cut(s)	724
CviQI	GTAC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	3 cut(s)	112, 352, 672
Eco47I	GGWCC	2 cut(s)	409, 623
Eco47III	AGCGCT	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	400, 869
EcoT14I	CCWWGG	3 cut(s)	112, 352, 672
ErhI	CCWWGG	3 cut(s)	112, 352, 672
FaeI	CATG	1 cut(s)	727
FaiI	YATR	2 cut(s)	618, 725
FaqI	GGGAC	2 cut(s)	294, 346
FatI	CATG	1 cut(s)	723
FauI	CCCGC	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	335, 438, 833, 836
FokI	GGATG	2 cut(s)	437, 767
Fsp4HI	GCNGC	4 cut(s)	335, 438, 833, 836
GlaI	GCGC	8 cut(s)	228, 327, 333, 421, 580, 600, 744, 831
GluI	GCNGC	4 cut(s)	335, 438, 833, 836
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	3 cut(s)	230, 335, 602
HaeIII	GGCC	4 cut(s)	260, 344, 544, 677
HapII	CCGG	9 cut(s)	25, 48, 66, 174, 234, 254, 475, 502, 663
HgaI	GACGC	2 cut(s)	503, 836
HhaI	GCGC	8 cut(s)	229, 328, 334, 422, 581, 601, 745, 832
Hin1II	CATG	1 cut(s)	727
Hin6I	GCGC	8 cut(s)	227, 326, 332, 420, 579, 599, 743, 830
HinP1I	GCGC	8 cut(s)	227, 326, 332, 420, 579, 599, 743, 830
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	71, 388, 526
HpaII	CCGG	9 cut(s)	25, 48, 66, 174, 234, 254, 475, 502, 663
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	3 cut(s)	75, 136, 649
Hpy188I	TCNGA	3 cut(s)	9, 103, 531
Hpy188III	TCNNGA	7 cut(s)	60, 66, 311, 502, 517, 523, 535
Hpy8I	GTNNAC	3 cut(s)	75, 136, 649
Hpy99I	CGWCG	8 cut(s)	38, 41, 137, 460, 494, 497, 830, 845
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	4 cut(s)	320, 565, 820, 887
HpyCH4IV	ACGT	4 cut(s)	132, 645, 702, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpySE526I	ACGT	4 cut(s)	132, 645, 702, 840
Hsp92II	CATG	1 cut(s)	727
HspAI	GCGC	8 cut(s)	227, 326, 332, 420, 579, 599, 743, 830
Kpn2I	TCCGGA	2 cut(s)	65, 501
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	62, 665
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	173
MaeII	ACGT	4 cut(s)	132, 645, 702, 840
MaeIII	GTNAC	3 cut(s)	462, 703, 712
MboII	GAAGA	2 cut(s)	370, 379
MflI	RGATCY	4 cut(s)	62, 96, 119, 445
MhlI	GDGCHC	1 cut(s)	853
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	2 cut(s)	571, 610
MluI	ACGCGT	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	149, 180, 436, 479, 614, 733, 745, 762, 820
Mox20I	TGGCCA	1 cut(s)	260
MroI	TCCGGA	2 cut(s)	65, 501
MroNI	GCCGGC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	876, 889
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	9 cut(s)	25, 48, 66, 174, 234, 254, 475, 502, 663
MspR9I	CCNGG	5 cut(s)	174, 254, 402, 664, 871
MvaI	CCWGG	2 cut(s)	402, 871
MvnI	CGCG	4 cut(s)	422, 497, 581, 830
MwoI	GCNNNNNNNGC	1 cut(s)	334
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	3 cut(s)	174, 254, 664
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	5 cut(s)	121, 399, 447, 506, 781
NmuCI	GTSAC	3 cut(s)	462, 703, 712
NspV	TTCGAA	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 708, 713
PdiI	GCCGGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	388, 526
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	662
PinAI	ACCGGT	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	336, 439, 834, 837
Ple19I	CGATCG	1 cut(s)	720
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	400, 869
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	400, 869
PspN4I	GGNNCC	5 cut(s)	121, 399, 447, 506, 781
PspPI	GGNCC	4 cut(s)	343, 409, 542, 623
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	4 cut(s)	62, 96, 119, 445
PvuI	CGATCG	1 cut(s)	720
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SalI	GTCGAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	876, 889
SatI	GCNGC	4 cut(s)	335, 438, 833, 836
Sau96I	GGNCC	4 cut(s)	343, 409, 542, 623
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	5 cut(s)	174, 254, 402, 664, 871
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	2 cut(s)	409, 623
Sse9I	AATT	2 cut(s)	571, 610
StyD4I	CCNGG	5 cut(s)	172, 252, 400, 662, 869
StyI	CCWWGG	3 cut(s)	112, 352, 672
TaaI	ACNGT	4 cut(s)	320, 565, 820, 887
TaiI	ACGT	4 cut(s)	135, 648, 705, 843
TaqI	TCGA	5 cut(s)	39, 135, 284, 720, 825
TasI	AATT	2 cut(s)	571, 610
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	3 cut(s)	440, 835, 838
TfiI	GAWTC	2 cut(s)	388, 526
Tru1I	TTAA	2 cut(s)	876, 889
Tru9I	TTAA	2 cut(s)	876, 889
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	3 cut(s)	462, 703, 712
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	3 cut(s)	462, 703, 712
TspDTI	ATGAA	2 cut(s)	364, 469
TspGWI	ACGGA	2 cut(s)	22, 182
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	409, 623
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 685
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.