Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010107

Physical Location & Seq

Genomic Coordinates Reverse (-)

37274275 .. 37275132

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1259000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTATCCGACGAAACAGAAGCACCGGAGCTTCGTCGCTGAACACGTCGAAAAATGCTCCATATCGGAGGATTCTATAACCTCCACCGCCCACAGGATCTTCAAGTCTGTCCACGGTGGATCCTTGCGCCACATGGACCTCACCACCGGAACCAACGGCTGGGCGTCACCTTCCGGGGACCTATTCTCCCTCCGCACCAAGAACTACTTGTCGAAAAAACAAAAAGGCCCCGCCGGTGACTACCTACTGCAGCCGTGCGGCATTAACTGGCTCAGATCCAACACGAAACTCAAGAACGTACTCGTTCACCCTGATAATCGCATGGCCAACACGCTTCGGAAGGCACAGTCGCAAGGGAAGTCCTTGAAGAGCTTCATTTTCACCGTGAATCTCCAGATTCCTAGCAAGGACCAGCACATCGTCGTTTTCTATTTCACCACGGAGGATCCTATCCCTGCCGGCTTACTTCTCTACCAGTTCGTCAACGGCGACGATGCTGCGTGCTTGCTGGGGAAGGCGCTGACGTGTAATTACCATAGAGGACCCAACTACCTCGAGATTGACGTCGATATTGTGAGTTTCGGGATCACGAAAGTGATTCTGCGACTTGCATTGAGGTACATGACGAGCGTGATGATCGACATAGGGTTTATGATGGAGGCGCATGTGGAGGATGAGCTGCCTGAGAAGTTAGTCGGTGCGGTTCGGGTATGCGAGATGGAGATGTTATCGGTAACGGTTATGGAGGCGCTGCAGACGACTTCACTCGGGACATCGAGTTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

263

Amino Acids

29.28

Weight (kDa)

8.46

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR2_C	PF07059	54 - 166	4.3e-24	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
EDR2_C	PF07059	167 - 241	2.4e-25	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10750
fragaria_vesca	FvH4_2g41380
malus_domestica	MD08G1050500.v1.1 MD11G1259000.v1.1 MD15G1044400.v1.1
prunus_persica	Prupe.1G398300_v2.0.a1
pyrus_communis	pycom08g04180
rosa_chinensis	RchiOBHm_Chr6g0299091
rosa_laevigata	RLG00000011462 RLG00000033871
rosa_multiflora	Rmu_sc0005120.1_g000010 Rmu_sc0007483.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169010
rosa_rugosa	Rorug06G0285300
rosa_samantha	Rh2CG134900 Rh2DG135400 Rh5CG299000 Rh6AG396200 Rh6CG410800 Rh6DG397400
rosa_wichuraiana	Rw6G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	159
AciI	CCGC	5 cut(s)	87, 193, 231, 258, 701
AclWI	GGATC	7 cut(s)	104, 114, 127, 270, 440, 453, 593
AcoI	YGGCCR	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	164, 564
AfaI	GTAC	2 cut(s)	300, 620
AfiI	CCNNNNNNNGG	2 cut(s)	93, 159
AflIII	ACRYGT	2 cut(s)	43, 524
AgsI	TTSAA	2 cut(s)	103, 367
AjiI	CACGTC	2 cut(s)	46, 525
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	3 cut(s)	30, 372, 679
AluI	AGCT	3 cut(s)	30, 372, 679
AlwI	GGATC	7 cut(s)	104, 114, 127, 270, 440, 453, 593
Ama87I	CYCGRG	2 cut(s)	554, 767
AoxI	GGCC	2 cut(s)	226, 324
ApeKI	GCWGC	4 cut(s)	250, 497, 679, 751
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	4 cut(s)	129, 520, 664, 751
AspS9I	GGNCC	5 cut(s)	136, 178, 227, 409, 542
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	6 cut(s)	133, 159, 248, 299, 373, 427
AvaI	CYCGRG	2 cut(s)	554, 767
AvaII	GGWCC	4 cut(s)	136, 178, 409, 542
BalI	TGGCCA	1 cut(s)	326
BamHI	GGATCC	2 cut(s)	119, 445
BbvI	GCAGC	4 cut(s)	262, 484, 666, 738
BccI	CCATC	2 cut(s)	649, 712
BceAI	ACGGC	3 cut(s)	172, 238, 502
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	175
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	2 cut(s)	248, 752
BfoI	RGCGCY	2 cut(s)	521, 752
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	251, 259, 498, 680, 752
BlsI	GCNGC	5 cut(s)	252, 260, 499, 681, 753
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	4 cut(s)	136, 178, 409, 542
BmeT110I	CYCGRG	2 cut(s)	554, 767
BmgBI	CACGTC	2 cut(s)	46, 525
BmgT120I	GGNCC	5 cut(s)	136, 178, 227, 409, 542
BmiI	GGNNCC	6 cut(s)	121, 151, 179, 229, 447, 544
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	2 cut(s)	164, 564
BsaJI	CCNNGG	3 cut(s)	112, 174, 438
BsaWI	WCCGGW	2 cut(s)	24, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 159
Bse118I	RCCGGY	2 cut(s)	233, 458
Bse1I	ACTGG	2 cut(s)	272, 475
BseDI	CCNNGG	3 cut(s)	112, 174, 438
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	93, 159
BseMII	CTCAG	2 cut(s)	286, 675
BseNI	ACTGG	2 cut(s)	272, 475
BseXI	GCAGC	4 cut(s)	262, 484, 666, 738
BseYI	CCCAGC	2 cut(s)	159, 508
BshFI	GGCC	2 cut(s)	228, 326
BsiHKCI	CYCGRG	2 cut(s)	554, 767
BsiSI	CCGG	5 cut(s)	25, 147, 174, 234, 459
BslFI	GGGAC	2 cut(s)	191, 784
BslI	CCNNNNNNNGG	2 cut(s)	93, 159
BsmFI	GGGAC	2 cut(s)	191, 784
BsnI	GGCC	2 cut(s)	228, 326
BsoBI	CYCGRG	2 cut(s)	554, 767
Bsp143I	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
BspACI	CCGC	5 cut(s)	87, 193, 231, 258, 701
BspANI	GGCC	2 cut(s)	228, 326
BspCNI	CTCAG	2 cut(s)	285, 676
BspLI	GGNNCC	6 cut(s)	121, 151, 179, 229, 447, 544
BspMAI	CTGCAG	2 cut(s)	252, 756
BspPI	GGATC	7 cut(s)	104, 114, 127, 270, 440, 453, 593
BspQI	GCTCTTC	1 cut(s)	362
BsrFI	RCCGGY	2 cut(s)	233, 458
BsrI	ACTGG	2 cut(s)	272, 475
BssAI	RCCGGY	2 cut(s)	233, 458
BssECI	CCNNGG	3 cut(s)	112, 174, 438
BssMI	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
BssNI	GRCGYC	2 cut(s)	164, 564
Bst4CI	ACNGT	4 cut(s)	116, 348, 385, 739
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	2 cut(s)	164, 564
BstC8I	GCNNGC	3 cut(s)	460, 502, 506
BstDEI	CTNAG	2 cut(s)	272, 684
BstDSI	CCRYGG	2 cut(s)	112, 438
BstF5I	GGATG	1 cut(s)	679
BstH2I	RGCGCY	2 cut(s)	521, 752
BstHHI	GCGC	4 cut(s)	129, 520, 664, 751
BstKTI	GATC	6 cut(s)	99, 122, 278, 448, 588, 639
BstMBI	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	2 cut(s)	248, 752
BstV1I	GCAGC	4 cut(s)	262, 484, 666, 738
BstX2I	RGATCY	4 cut(s)	96, 119, 275, 445
BstYI	RGATCY	4 cut(s)	96, 119, 275, 445
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	228, 326
BtgI	CCRYGG	2 cut(s)	112, 438
BtrI	CACGTC	2 cut(s)	46, 525
BtsCI	GGATG	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	460, 502, 506
CfoI	GCGC	4 cut(s)	129, 520, 664, 751
Cfr10I	RCCGGY	2 cut(s)	233, 458
Cfr13I	GGNCC	5 cut(s)	136, 178, 227, 409, 542
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	299, 619
CviAII	CATG	4 cut(s)	133, 322, 622, 665
CviJI	RGCY	9 cut(s)	30, 159, 228, 253, 271, 326, 372, 462, 679
CviKI_1	RGCY	9 cut(s)	30, 159, 228, 253, 271, 326, 372, 462, 679
CviQI	GTAC	2 cut(s)	299, 619
DdeI	CTNAG	2 cut(s)	272, 684
DpnI	GATC	6 cut(s)	98, 121, 277, 447, 587, 638
DpnII	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco47I	GGWCC	4 cut(s)	136, 178, 409, 542
Eco88I	CYCGRG	2 cut(s)	554, 767
EcoO109I	RGGNCCY	3 cut(s)	178, 227, 542
FaeI	CATG	4 cut(s)	136, 325, 625, 668
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	2 cut(s)	191, 784
FatI	CATG	4 cut(s)	132, 321, 621, 664
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	251, 259, 498, 680, 752
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	5 cut(s)	251, 259, 498, 680, 752
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	4 cut(s)	128, 519, 663, 750
GluI	GCNGC	5 cut(s)	251, 259, 498, 680, 752
GsaI	CCCAGC	2 cut(s)	163, 512
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	2 cut(s)	521, 752
HaeIII	GGCC	2 cut(s)	228, 326
HapII	CCGG	5 cut(s)	25, 147, 174, 234, 459
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	4 cut(s)	129, 520, 664, 751
Hin1I	GRCGYC	2 cut(s)	164, 564
Hin1II	CATG	4 cut(s)	136, 325, 625, 668
Hin6I	GCGC	4 cut(s)	127, 518, 662, 749
HinP1I	GCGC	4 cut(s)	127, 518, 662, 749
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	71, 388, 397, 598
HpaII	CCGG	5 cut(s)	25, 147, 174, 234, 459
HphI	GGTGA	6 cut(s)	133, 159, 248, 299, 373, 427
Hpy166II	GTNNAC	3 cut(s)	112, 307, 484
Hpy188I	TCNGA	4 cut(s)	9, 67, 275, 339
Hpy188III	TCNNGA	6 cut(s)	292, 394, 556, 583, 589, 769
Hpy8I	GTNNAC	3 cut(s)	112, 307, 484
Hpy99I	CGWCG	6 cut(s)	13, 38, 50, 425, 494, 569
HpyAV	CCTTC	3 cut(s)	180, 334, 508
HpyCH4III	ACNGT	4 cut(s)	116, 348, 385, 739
HpyCH4IV	ACGT	4 cut(s)	45, 297, 524, 564
HpyCH4V	TGCA	3 cut(s)	250, 611, 754
HpyF3I	CTNAG	2 cut(s)	272, 684
HpySE526I	ACGT	4 cut(s)	45, 297, 524, 564
Hsp92I	GRCGYC	2 cut(s)	164, 564
Hsp92II	CATG	4 cut(s)	136, 325, 625, 668
HspAI	GCGC	4 cut(s)	127, 518, 662, 749
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	27, 62
Lsp1109I	GCAGC	4 cut(s)	262, 484, 666, 738
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	4 cut(s)	45, 297, 524, 564
MaeIII	GTNAC	3 cut(s)	165, 236, 733
MalI	GATC	6 cut(s)	98, 121, 277, 447, 587, 638
MboI	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
MboII	GAAGA	2 cut(s)	91, 379
MflI	RGATCY	4 cut(s)	96, 119, 275, 445
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	1 cut(s)	529
MluNI	TGGCCA	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	32, 303
Mox20I	TGGCCA	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	5 cut(s)	25, 147, 174, 234, 459
MspR9I	CCNGG	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	136, 325, 625, 668
NlaIV	GGNNCC	6 cut(s)	121, 151, 179, 229, 447, 544
NmuCI	GTSAC	2 cut(s)	165, 236
NspI	RCATGY	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	593
PaeR7I	CTCGAG	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 486, 561
PdiI	GCCGGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	4 cut(s)	71, 388, 397, 598
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	252, 260, 499, 681, 753
PpuMI	RGGWCCY	2 cut(s)	178, 542
Psp5II	RGGWCCY	2 cut(s)	178, 542
PspFI	CCCAGC	2 cut(s)	159, 508
PspN4I	GGNNCC	6 cut(s)	121, 151, 179, 229, 447, 544
PspPI	GGNCC	5 cut(s)	136, 178, 227, 409, 542
PspPPI	RGGWCCY	2 cut(s)	178, 542
PstI	CTGCAG	2 cut(s)	252, 756
PsuI	RGATCY	4 cut(s)	96, 119, 275, 445
RsaI	GTAC	2 cut(s)	300, 620
RsaNI	GTAC	2 cut(s)	299, 619
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	5 cut(s)	251, 259, 498, 680, 752
Sau3AI	GATC	6 cut(s)	96, 119, 275, 445, 585, 636
Sau96I	GGNCC	5 cut(s)	136, 178, 227, 409, 542
ScrFI	CCNGG	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	2 cut(s)	248, 752
Sfr274I	CTCGAG	1 cut(s)	554
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	4 cut(s)	136, 178, 409, 542
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	290, 554
SmoI	CTYRAG	2 cut(s)	290, 554
Sse9I	AATT	1 cut(s)	529
SsiI	CCGC	5 cut(s)	87, 193, 231, 258, 701
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	116, 348, 385, 739
TaiI	ACGT	4 cut(s)	48, 300, 527, 567
TaqI	TCGA	6 cut(s)	48, 212, 555, 567, 639, 776
TasI	AATT	1 cut(s)	529
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	4 cut(s)	71, 388, 397, 598
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	2 cut(s)	165, 236
TseI	GCWGC	4 cut(s)	250, 497, 679, 751
Tsp45I	GTSAC	2 cut(s)	165, 236
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	4 cut(s)	136, 178, 409, 542
XceI	RCATGY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	402
ZraI	GACGTC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.