Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005120.1

Orthogroup ID

OG0010107

Physical Location & Seq

Genomic Coordinates Forward (+)

49510 .. 51376

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005120.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgggtgacctggtggcgctcacggcggtgctgggtagctcacgctcagtcgttggagtgtatgaagcctctagtcggaatcggaggttggcatctcaggaacagtttagctcgatttggactggaggttggagaattgaggcatgtagagctagctacgagttccggcgagctcgtacggtggttttctggcttcgagatttaaggcatggtttccttagggcttggtgcttcaatttttggtcggctttgagtgctgaatcaattggtggtgacggtgacgttgtgtggtggccggagatggagtttttcgatgggtgcaaagggaagaagagaaagagtgtgcaagaggtcgagagggaagataaagagagacgcaggtggaagtggagagggagaatgggttataggccccatcgtcaattgcgtgcgtgggcagtagccgcgacagggagagccaagtggtgtgtcttcgaagcggaaactggaagagtatggcaacctcttgatgtttcgaccgataaggacgacgacgtcgtttctgacctactccaaaacttctactttgccacagaggatcctattccatctggatcactcctccacagaggatcctattccatccggaacactcctccactgggcaagatcggttcaagatcgttccgaaaacaccggttaaagatcgtgaatcggatcatgaaagggtcgtggatcattgagaaaacagtgggcaacggatcactcctccacagaggatcctattccatccggaacactcctccactgggcaagatcgttccgaaaacaccggttaaagatcgtgaatcggatcatgaaagggtcgtggatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

285

Amino Acids

32.86

Weight (kDa)

10.07

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10750
fragaria_vesca	FvH4_2g41380
malus_domestica	MD08G1050500.v1.1 MD11G1259000.v1.1 MD15G1044400.v1.1
prunus_persica	Prupe.1G398300_v2.0.a1
pyrus_communis	pycom08g04180
rosa_chinensis	RchiOBHm_Chr6g0299091
rosa_laevigata	RLG00000011462 RLG00000033871
rosa_multiflora	Rmu_sc0005120.1_g000010 Rmu_sc0007483.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169010
rosa_rugosa	Rorug06G0285300
rosa_samantha	Rh2CG134900 Rh2DG135400 Rh5CG299000 Rh6AG396200 Rh6CG410800 Rh6DG397400
rosa_wichuraiana	Rw6G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	369
AasI	GACNNNNNNGTC	1 cut(s)	533
AatII	GACGTC	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	369
AccII	CGCG	1 cut(s)	446
AccIII	TCCGGA	2 cut(s)	624, 771
AciI	CCGC	3 cut(s)	26, 444, 479
AcoI	YGGCCR	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	4 cut(s)	75, 450, 641, 788
AgeI	ACCGGT	2 cut(s)	675, 811
AgsI	TTSAA	2 cut(s)	235, 657
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	5 cut(s)	39, 111, 152, 156, 173
AluI	AGCT	5 cut(s)	39, 111, 152, 156, 173
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	367
Aor13HI	TCCGGA	2 cut(s)	624, 771
AoxI	GGCC	2 cut(s)	293, 410
AsiGI	ACCGGT	2 cut(s)	675, 811
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	3 cut(s)	17, 284, 290
AsuII	TTCGAA	1 cut(s)	474
AsuNHI	GCTAGC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	218
BamHI	GGATCC	3 cut(s)	577, 611, 758
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	6 cut(s)	295, 308, 423, 595, 629, 776
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	72, 153
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	4 cut(s)	413, 579, 613, 760
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	2 cut(s)	650, 797
BmsI	GCATC	1 cut(s)	101
BmtI	GCTAGC	1 cut(s)	156
BmuI	ACTGGG	2 cut(s)	650, 797
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	534
BsaWI	WCCGGW	4 cut(s)	624, 675, 771, 811
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 450, 641, 788
Bse118I	RCCGGY	2 cut(s)	675, 811
Bse1I	ACTGG	4 cut(s)	127, 490, 645, 792
Bse21I	CCTNAGG	1 cut(s)	218
BseAI	TCCGGA	2 cut(s)	624, 771
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	621, 768
BseLI	CCNNNNNNNGG	4 cut(s)	75, 450, 641, 788
BseMII	CTCAG	2 cut(s)	60, 110
BseNI	ACTGG	4 cut(s)	127, 490, 645, 792
BseRI	GAGGAG	4 cut(s)	590, 624, 737, 771
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	295, 412
BshTI	ACCGGT	2 cut(s)	675, 811
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	6 cut(s)	166, 296, 625, 676, 772, 812
BsiWI	CGTACG	1 cut(s)	176
BslI	CCNNNNNNNGG	4 cut(s)	75, 450, 641, 788
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	295, 412
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	2 cut(s)	624, 771
BspACI	CCGC	3 cut(s)	26, 444, 479
BspANI	GGCC	2 cut(s)	295, 412
BspCNI	CTCAG	2 cut(s)	59, 109
BspEI	TCCGGA	2 cut(s)	624, 771
BspFNI	CGCG	1 cut(s)	446
BspHI	TCATGA	2 cut(s)	699, 835
BspLI	GGNNCC	4 cut(s)	413, 579, 613, 760
BspMI	ACCTGC	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	474
BsrFI	RCCGGY	2 cut(s)	675, 811
BsrI	ACTGG	4 cut(s)	127, 490, 645, 792
BssAI	RCCGGY	2 cut(s)	675, 811
BssNI	GRCGYC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	4 cut(s)	105, 181, 278, 730
Bst6I	CTCTTC	2 cut(s)	326, 484
BstACI	GRCGYC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	154, 171, 429
BstDEI	CTNAG	3 cut(s)	46, 96, 218
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	621, 768
BstFNI	CGCG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 149, 254, 443
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	3 cut(s)	577, 611, 758
BstYI	RGATCY	3 cut(s)	577, 611, 758
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	295, 412
BtsCI	GGATG	2 cut(s)	621, 768
BtsIMutI	CAGTG	3 cut(s)	638, 735, 785
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	154, 171, 429
CciI	TCATGA	2 cut(s)	699, 835
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	2 cut(s)	675, 811
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	384
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	177
CspAI	ACCGGT	2 cut(s)	675, 811
CviAII	CATG	4 cut(s)	144, 209, 700, 836
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	3 cut(s)	46, 96, 218
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	326, 484
EarI	CTCTTC	2 cut(s)	326, 484
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	4 cut(s)	147, 212, 703, 839
FaiI	YATR	7 cut(s)	63, 145, 210, 408, 496, 701, 837
FatI	CATG	4 cut(s)	143, 208, 699, 835
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	608, 755
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	2 cut(s)	72, 153
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	444
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	295, 412
HapII	CCGG	6 cut(s)	166, 296, 625, 676, 772, 812
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	4 cut(s)	147, 212, 703, 839
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	4 cut(s)	79, 260, 691, 827
HpaII	CCGG	6 cut(s)	166, 296, 625, 676, 772, 812
HphI	GGTGA	3 cut(s)	17, 284, 290
Hpy188I	TCNGA	7 cut(s)	78, 84, 544, 668, 696, 804, 832
Hpy99I	CGWCG	3 cut(s)	533, 536, 539
HpyCH4III	ACNGT	4 cut(s)	105, 181, 278, 730
HpyCH4IV	ACGT	2 cut(s)	282, 534
HpyCH4V	TGCA	2 cut(s)	321, 346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 149, 254, 443
HpyF3I	CTNAG	3 cut(s)	46, 96, 218
HpySE526I	ACGT	2 cut(s)	282, 534
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	4 cut(s)	147, 212, 703, 839
HspAI	GCGC	1 cut(s)	17
Kpn2I	TCCGGA	2 cut(s)	624, 771
LweI	GCATC	1 cut(s)	101
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	2 cut(s)	72, 153
MaeII	ACGT	2 cut(s)	282, 534
MaeIII	GTNAC	3 cut(s)	5, 272, 278
MboII	GAAGA	5 cut(s)	340, 343, 374, 463, 501
MfeI	CAATTG	2 cut(s)	264, 422
MflI	RGATCY	3 cut(s)	577, 611, 758
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	135, 235, 264, 422
MmeI	TCCRAC	3 cut(s)	34, 56, 110
MroI	TCCGGA	2 cut(s)	624, 771
MseI	TTAA	3 cut(s)	203, 680, 816
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	6 cut(s)	166, 296, 625, 676, 772, 812
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	2 cut(s)	264, 422
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	23, 149, 254, 443
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	147, 212, 703, 839
NlaIV	GGNNCC	4 cut(s)	413, 579, 613, 760
NmuCI	GTSAC	3 cut(s)	5, 272, 278
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	474
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	2 cut(s)	699, 835
PaqCI	CACCTGC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	2 cut(s)	424, 534
PfeI	GAWTC	4 cut(s)	79, 260, 691, 827
Pfl23II	CGTACG	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	533
PinAI	ACCGGT	2 cut(s)	675, 811
PkrI	GCNGC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	9
PspLI	CGTACG	1 cut(s)	176
PspN4I	GGNNCC	4 cut(s)	413, 579, 613, 760
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	3 cut(s)	577, 611, 758
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	203, 680, 816
SatI	GCNGC	1 cut(s)	444
Sau96I	GGNCC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	175
SexAI	ACCWGGT	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	101
SfuI	TTCGAA	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	135, 235, 264, 422
SsiI	CCGC	3 cut(s)	26, 444, 479
SspMI	CTAG	2 cut(s)	72, 153
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	105, 181, 278, 730
TaiI	ACGT	2 cut(s)	285, 537
TaqI	TCGA	6 cut(s)	113, 196, 312, 354, 474, 515
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	4 cut(s)	135, 235, 264, 422
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	4 cut(s)	79, 260, 691, 827
Tru1I	TTAA	3 cut(s)	203, 680, 816
Tru9I	TTAA	3 cut(s)	203, 680, 816
TscAI	CASTG	3 cut(s)	645, 735, 792
TseFI	GTSAC	3 cut(s)	5, 272, 278
Tsp45I	GTSAC	3 cut(s)	5, 272, 278
TspDTI	ATGAA	3 cut(s)	78, 716, 852
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	3 cut(s)	645, 735, 792
Tth111I	GACNNNGTC	1 cut(s)	533
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	2 cut(s)	72, 153
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.