RLG00000033871

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010107
Physical Location & Seq
Forward (+)
33565999 .. 33568131
2133 bp
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UTR
Exon/CDS
Intron
RLM00000033871

Sequence Viewer

Length: 369 bp
ATGAAAGCGAGTCGAGTTGGGGAGACTCCTCAACCCGGTCAGACGTTCAAGGGCCCACCTATAAATGTCCGGCAACAGCCCCATCATCGATTGCGCCGCGAGCCAGGTGGTGTGTCGTCGAAGTGGAAACTGAACGAGTATGGCAGCCTCTTGACGTTCTCCACTGACGAGGACGACGACATCATTTTTGACCTACTCCAAAACTTCTACTTCGCCGCAGAGGATCCTATTCCATCCGGGCCACTCCTCCACCGGTTCATCAACGGTGACAACTCGTTCCGGAAACACCTGTTCAAGGTCGTGAATCGGATCGTGAAAGGGCTGTGGATCATTGAGAAAATAGCGCGTGTTTACTCCGGCGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

123

Amino Acids

13.9

Weight (kDa)

9.57

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 69 - 114 1.4e-07 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 99, 346
AccIII TCCGGA 1 cut(s) 279
AciI CCGC 3 cut(s) 97, 216, 360
AclWI GGATC 4 cut(s) 218, 231, 317, 335
AfiI CCNNNNNNNGG 2 cut(s) 35, 295
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 49, 295
AjnI CCWGG 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 4 cut(s) 218, 231, 317, 335
Aor13HI TCCGGA 1 cut(s) 279
AoxI GGCC 2 cut(s) 52, 239
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 144
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 252
AspLEI GCGC 2 cut(s) 96, 346
AspS9I GGNCC 3 cut(s) 52, 53, 239
AsuC2I CCSGG 2 cut(s) 36, 238
AsuHPI GGTGA 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 90, 241
BciT130I CCWGG 1 cut(s) 105
BcnI CCSGG 2 cut(s) 36, 238
BcoDI GTCTC 1 cut(s) 17
BisI GCNGC 3 cut(s) 97, 145, 216
BlsI GCNGC 3 cut(s) 98, 146, 217
Bme1390I CCNGG 3 cut(s) 36, 105, 238
BmgT120I GGNCC 3 cut(s) 52, 53, 239
BmiI GGNNCC 2 cut(s) 54, 225
BmrFI CCNGG 3 cut(s) 36, 105, 238
BpuMI CCSGG 2 cut(s) 36, 238
Bsa29I ATCGAT 1 cut(s) 88
BsaWI WCCGGW 2 cut(s) 252, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 295
Bse118I RCCGGY 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 279
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 88
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 35, 295
BseRI GAGGAG 2 cut(s) 18, 236
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 99, 346
BshFI GGCC 2 cut(s) 54, 241
BshTI ACCGGT 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 88
BsiSI CCGG 6 cut(s) 36, 70, 237, 253, 280, 357
BslI CCNNNNNNNGG 2 cut(s) 35, 295
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 2 cut(s) 54, 241
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 223, 309, 327
BspACI CCGC 3 cut(s) 97, 216, 360
BspANI GGCC 2 cut(s) 54, 241
BspDI ATCGAT 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 279
BspFNI CGCG 2 cut(s) 99, 346
BspLI GGNNCC 2 cut(s) 54, 225
BspPI GGATC 4 cut(s) 218, 231, 317, 335
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssMI GATC 3 cut(s) 223, 309, 327
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 101
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 2 cut(s) 99, 346
BstHHI GCGC 2 cut(s) 96, 346
BstKTI GATC 3 cut(s) 226, 312, 330
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 223, 309, 327
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 3 cut(s) 34, 103, 236
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 2 cut(s) 99, 346
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 2 cut(s) 54, 241
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 96, 346
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 52, 53, 239
ClaI ATCGAT 1 cut(s) 88
CspAI ACCGGT 1 cut(s) 252
CviJI RGCY 6 cut(s) 54, 79, 103, 147, 241, 322
CviKI_1 RGCY 6 cut(s) 54, 79, 103, 147, 241, 322
DpnI GATC 3 cut(s) 225, 311, 329
DpnII GATC 3 cut(s) 223, 309, 327
Eco24I GRGCYC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 56
FaiI YATR 2 cut(s) 62, 141
Fnu4HI GCNGC 3 cut(s) 97, 145, 216
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 97, 145, 216
GlaI GCGC 2 cut(s) 95, 345
GluI GCNGC 3 cut(s) 97, 145, 216
HaeIII GGCC 2 cut(s) 54, 241
HapII CCGG 6 cut(s) 36, 70, 237, 253, 280, 357
HhaI GCGC 2 cut(s) 96, 346
Hin6I GCGC 2 cut(s) 94, 344
HinP1I GCGC 2 cut(s) 94, 344
HinfI GANTC 3 cut(s) 10, 25, 304
HpaII CCGG 6 cut(s) 36, 70, 237, 253, 280, 357
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 42, 309
Hpy188III TCNNGA 4 cut(s) 151, 280, 301, 313
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 121, 179
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 44, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 2 cut(s) 44, 155
HspAI GCGC 2 cut(s) 94, 344
Kpn2I TCCGGA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 223, 309, 327
LpnPI CCDG 8 cut(s) 49, 83, 90, 117, 250, 266, 293, 302
Lsp1109I GCAGC 1 cut(s) 156
MaeII ACGT 2 cut(s) 44, 155
MaeIII GTNAC 1 cut(s) 266
MalI GATC 3 cut(s) 225, 311, 329
MboI GATC 3 cut(s) 223, 309, 327
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 56
MlyI GAGTC 2 cut(s) 19, 19
MnlI CCTC 5 cut(s) 39, 158, 163, 214, 257
MroI TCCGGA 1 cut(s) 279
MspI CCGG 6 cut(s) 36, 70, 237, 253, 280, 357
MspR9I CCNGG 3 cut(s) 36, 105, 238
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 2 cut(s) 99, 346
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 2 cut(s) 36, 238
NdeII GATC 3 cut(s) 223, 309, 327
NlaIV GGNNCC 2 cut(s) 54, 225
NmuCI GTSAC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 304
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 3 cut(s) 98, 146, 217
PleI GAGTC 2 cut(s) 18, 19
PpsI GAGTC 2 cut(s) 18, 19
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 54, 225
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 52, 53, 239
PsuI RGATCY 1 cut(s) 223
SatI GCNGC 3 cut(s) 97, 145, 216
Sau3AI GATC 3 cut(s) 223, 309, 327
Sau96I GGNCC 3 cut(s) 52, 53, 239
SchI GAGTC 2 cut(s) 19, 19
ScrFI CCNGG 3 cut(s) 36, 105, 238
SduI GDGCHC 1 cut(s) 56
SetI ASST 7 cut(s) 47, 61, 109, 158, 195, 291, 300
SsiI CCGC 3 cut(s) 97, 216, 360
StyD4I CCNGG 3 cut(s) 34, 103, 236
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 47, 158
TaqI TCGA 3 cut(s) 13, 88, 119
TauI GCSGC 2 cut(s) 99, 218
TfiI GAWTC 1 cut(s) 304
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 17, 247
TspRI CASTG 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.