Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

64207 .. 67671

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCGAACAATGAATGTCAAGGGGCTCACACTTTTTCATTTAAAGAGTCATCTGCAGAAATACAGGCTAGGTAAGCAATCGGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTTGAAAGCCCTGGTACTGGTAATTCTTCACCAAATTTGCCTACTTCCGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTGCATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCTGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCAAGTATTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCGTTACAATCCACAGATGTGGCTGGAGTTCACGGTCAGGAAGAAGTGCTAACTAGTTTCCAACCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGGCTAACTTTGGAAGGATCTCCAGGTGGTGGGAAAACAAGAATGCTGAGCTTGGAGTCGGCAACTGCATCTTTAATTTGGGGTGAAGCGAAGGTGAGAACCCAAGTTGAGGCTCATGGAATGACTAGGTATGCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

233

Amino Acids

25.45

Weight (kDa)

6.25

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	64 - 109	2.2e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	587
AclWI	GGATC	1 cut(s)	583
AcoI	YGGCCR	2 cut(s)	300, 370
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	2 cut(s)	139, 225
AfiI	CCNNNNNNNGG	3 cut(s)	140, 587, 667
AgsI	TTSAA	1 cut(s)	128
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	4 cut(s)	133, 276, 553, 580
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	317, 531, 609
AluI	AGCT	3 cut(s)	317, 531, 609
AlwI	GGATC	1 cut(s)	583
AoxI	GGCC	2 cut(s)	300, 370
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	144, 653, 664
BalI	TGGCCA	2 cut(s)	302, 372
BanII	GRGCYC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	4 cut(s)	135, 278, 555, 582
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	334
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	68, 492, 684
BfmI	CTRYAG	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	532
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	533
Bme1390I	CCNGG	4 cut(s)	135, 278, 555, 582
BmrFI	CCNGG	4 cut(s)	135, 278, 555, 582
BmsI	GCATC	4 cut(s)	100, 271, 315, 635
BpmI	CTGGAG	3 cut(s)	483, 564, 576
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	105, 133
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 587, 667
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	4 cut(s)	135, 278, 555, 582
BseDI	CCNNGG	2 cut(s)	105, 133
BseGI	GGATG	3 cut(s)	100, 115, 286
BseLI	CCNNNNNNNGG	3 cut(s)	140, 587, 667
BseMII	CTCAG	2 cut(s)	246, 596
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	518
BshFI	GGCC	2 cut(s)	302, 372
BslI	CCNNNNNNNGG	3 cut(s)	140, 587, 667
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	2 cut(s)	302, 372
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	334, 575
Bsp1720I	GCTNAGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	302, 372
BspCNI	CTCAG	2 cut(s)	247, 597
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	105, 133
BssMI	GATC	2 cut(s)	334, 575
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	4 cut(s)	135, 278, 555, 582
Bst4CI	ACNGT	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	255, 605
BstF5I	GGATG	3 cut(s)	100, 115, 286
BstKTI	GATC	2 cut(s)	337, 578
BstMBI	GATC	2 cut(s)	334, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	4 cut(s)	135, 278, 555, 582
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	4 cut(s)	133, 276, 553, 580
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	302, 372
BtsCI	GGATG	3 cut(s)	100, 115, 286
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	138, 224
CviAII	CATG	4 cut(s)	239, 304, 545, 674
CviQI	GTAC	2 cut(s)	138, 224
DdeI	CTNAG	2 cut(s)	255, 605
DpnI	GATC	2 cut(s)	336, 577
DpnII	GATC	2 cut(s)	334, 575
DraI	TTTAAA	1 cut(s)	42
EaeI	YGGCCR	2 cut(s)	300, 370
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	27
EcoRII	CCWGG	4 cut(s)	133, 276, 553, 580
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	242, 307, 548, 677
FatI	CATG	4 cut(s)	238, 303, 544, 673
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	3 cut(s)	107, 122, 293
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	3 cut(s)	68, 492, 684
GluI	GCNGC	1 cut(s)	532
GsuI	CTGGAG	3 cut(s)	483, 564, 576
HaeIII	GGCC	2 cut(s)	302, 372
Hin1II	CATG	4 cut(s)	242, 307, 548, 677
HinfI	GANTC	5 cut(s)	46, 271, 400, 550, 614
HphI	GGTGA	3 cut(s)	144, 653, 664
Hpy166II	GTNNAC	2 cut(s)	233, 469
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	81, 125, 476
Hpy8I	GTNNAC	2 cut(s)	233, 469
HpyAV	CCTTC	3 cut(s)	131, 566, 643
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	7 cut(s)	55, 214, 238, 244, 268, 284, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	255, 605
Hsp92II	CATG	4 cut(s)	242, 307, 548, 677
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	334, 575
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	4 cut(s)	100, 271, 315, 635
MaeI	CTAG	3 cut(s)	68, 492, 684
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	336, 577
MboI	GATC	2 cut(s)	334, 575
MboII	GAAGA	3 cut(s)	141, 303, 491
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	2 cut(s)	302, 372
MluCI	AATT	4 cut(s)	145, 157, 338, 633
MluNI	TGGCCA	2 cut(s)	302, 372
MlyI	GAGTC	3 cut(s)	55, 559, 623
MmeI	TCCRAC	1 cut(s)	523
Mox20I	TGGCCA	2 cut(s)	302, 372
MscI	TGGCCA	2 cut(s)	302, 372
MseI	TTAA	2 cut(s)	41, 632
MslI	CAYNNNNRTG	1 cut(s)	455
Msp20I	TGGCCA	2 cut(s)	302, 372
MspR9I	CCNGG	4 cut(s)	135, 278, 555, 582
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	4 cut(s)	135, 278, 555, 582
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	2 cut(s)	334, 575
NlaIII	CATG	4 cut(s)	242, 307, 548, 677
NspI	RCATGY	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	606
PfeI	GAWTC	2 cut(s)	271, 400
PflMI	CCANNNNNTGG	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	533
PleI	GAGTC	3 cut(s)	54, 558, 622
PpsI	GAGTC	3 cut(s)	54, 558, 622
Psp6I	CCWGG	4 cut(s)	133, 276, 553, 580
PspGI	CCWGG	4 cut(s)	133, 276, 553, 580
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	2 cut(s)	139, 225
RsaNI	GTAC	2 cut(s)	138, 224
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	41, 632
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	2 cut(s)	334, 575
SchI	GAGTC	3 cut(s)	55, 559, 623
ScrFI	CCNGG	4 cut(s)	135, 278, 555, 582
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	100, 271, 315, 635
SfcI	CTRYAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	4 cut(s)	145, 157, 338, 633
SspMI	CTAG	3 cut(s)	68, 492, 684
StyD4I	CCNGG	4 cut(s)	133, 276, 553, 580
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	420
TasI	AATT	4 cut(s)	145, 157, 338, 633
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	271, 400
Tru1I	TTAA	2 cut(s)	41, 632
Tru9I	TTAA	2 cut(s)	41, 632
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	531
TspDTI	ATGAA	5 cut(s)	26, 26, 105, 191, 204
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	3 cut(s)	68, 492, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.