Rorug04G0381600
MYB Family

MYB-CC type transfactor, LHEQLE motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007490
Physical Location & Seq
Reverse (-)
55212511 .. 55223315
10805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0381600.1

Sequence Viewer

Length: 1113 bp
ATGACAAAAGGAAAAAAATGGGCCAAGTTGAGAAAGCTGTCCAACCTTGCCTTCCATGGAGAGAGCTTAAAAGCTATGTTTCCAGAAATGATAGCTAGTGCCGAGGCGATGGTAGAAAGGTGGAAAAATCATGAAGGAAAAGAAATTGAGGTGTTTGAAGAATTTAGGTTGCTGACTTCAGAAGTGATTTCCAGGACAGCATTTGGCAGCAGCTACTTAGAAGGGAAGAAGATTTTTGATATGTTGATGAAGCTATCCTCCATAATATTCAGAAATCTTCTCAACATCAGGTTTCCTGGCATGAGTAAGCTTTTTAGAACTAGCGATGATATTGAATCAGAAATGGTTGAGAAAGGAATACGCGACTTCATAATGGCGATTGTTAAGAAAAGAGAAAAGGAGGCAAAGGCTGGAGAAGAAGATAGCTTTGGAAAAGATTTTCTAGGATTGCTTTTAAAGGCTCATCATGCTACAAATGACAAGCAGAGGATTTCGGTGGATGAATTGGTTGAGGAATGCAAGACGTTTTACTTTGCTGGACAAGAGACCACCAATACTTTGCTTGCTTGGACTACTCTTCTTCTGGCACTCCATCCTGAATGGCAAGAGGAAGCAAGAAAGGAGGTCCTGCAGTTATTTGGTAAAGAAACTCCAACTTATGATGGCATTGCCAAATTAAAAACAATGAGTATGATCATTAATGAGACTCTAAGGTTATATCCTCCTGCTATTTTGCTTGCAAGGAAAGTTTCAAGGGAAGTTAGACTGGGAAAACTCTTGGTTCCTGCTAATGTTGAATTGCTCGTCCCAACTCTAGCACTTCACCATGAACCTCAGTTCTGGGGAGAAGAAGTGGAATTTTTCAAACCAGAGCGATTCTCTGAAGGGGTTGCTAAAGCTACTAATGATAACATGGCCGCCTTCATGCCCTTTGGATTGGGACCCCGAATATGTGTAGGATTCAACTTTGCTGCCCTTGAAGCAAAGATAGCTATGTCAATGATTCTACAACGCTACTCATTTACCCTTTCCCCAGGTTATGTCCACTCGCCTTTTCAGTATGTTACTGTTCGCCCTCATAATGGAGTTCAAGTAATTCTACACCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

370

Amino Acids

42.22

Weight (kDa)

8.32

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 346 1.7e-74 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 918
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 2 cut(s) 161, 857
AcuI CTGAAG 2 cut(s) 162, 903
AfiI CCNNNNNNNGG 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 158, 335, 753, 797, 865, 964, 980, 1091
AjnI CCWGG 3 cut(s) 191, 295, 1033
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 411, 443
Alw26I GTCTC 2 cut(s) 539, 698
AoxI GGCC 2 cut(s) 21, 915
ApeKI GCWGC 3 cut(s) 207, 210, 971
ApoI RAATTY 2 cut(s) 161, 857
AseI ATTAAT 1 cut(s) 699
AspS9I GGNCC 3 cut(s) 21, 625, 941
AsuHPI GGTGA 1 cut(s) 815
AvaII GGWCC 2 cut(s) 625, 941
BbvI GCAGC 3 cut(s) 219, 222, 958
BccI CCATC 3 cut(s) 103, 600, 656
BciT130I CCWGG 3 cut(s) 193, 297, 1035
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 539, 698
BfaI CTAG 4 cut(s) 96, 321, 443, 815
BfmI CTRYAG 1 cut(s) 629
BisI GCNGC 4 cut(s) 208, 211, 918, 972
BlsI GCNGC 4 cut(s) 209, 212, 919, 973
Bme1390I CCNGG 3 cut(s) 193, 297, 1035
Bme18I GGWCC 2 cut(s) 625, 941
BmgT120I GGNCC 3 cut(s) 21, 625, 941
BmiI GGNNCC 3 cut(s) 783, 942, 943
BmrFI CCNGG 3 cut(s) 193, 297, 1035
BmrI ACTGGG 1 cut(s) 776
BmuI ACTGGG 1 cut(s) 776
BplI GAGNNNNNCTC 2 cut(s) 863, 895
BpmI CTGGAG 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 55, 102, 1033
BsaXI ACNNNNNCTCC 4 cut(s) 837, 867, 1077, 1107
Bsc4I CCNNNNNNNGG 1 cut(s) 1082
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 3 cut(s) 193, 297, 1035
BseDI CCNNGG 3 cut(s) 55, 102, 1033
BseGI GGATG 2 cut(s) 505, 592
BseLI CCNNNNNNNGG 1 cut(s) 1082
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 3 cut(s) 219, 222, 958
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 2 cut(s) 23, 917
BslFI GGGAC 2 cut(s) 791, 954
BslI CCNNNNNNNGG 1 cut(s) 1082
BsmAI GTCTC 2 cut(s) 539, 698
BsmFI GGGAC 2 cut(s) 791, 954
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 2 cut(s) 23, 917
Bso31I GGTCTC 1 cut(s) 539
Bsp143I GATC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 1 cut(s) 918
BspANI GGCC 2 cut(s) 23, 917
BspCNI CTCAG 1 cut(s) 847
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 783, 942, 943
BspMAI CTGCAG 1 cut(s) 633
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 3 cut(s) 55, 102, 1033
BssMI GATC 1 cut(s) 693
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 3 cut(s) 193, 297, 1035
Bst4CI ACNGT 1 cut(s) 1069
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 564, 738
BstDEI CTNAG 3 cut(s) 217, 710, 834
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 505, 592
BstFNI CGCG 1 cut(s) 363
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 2 cut(s) 539, 698
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 3 cut(s) 467, 980, 989
BstNI CCWGG 3 cut(s) 193, 297, 1035
BstSCI CCNGG 3 cut(s) 191, 295, 1033
BstSFI CTRYAG 1 cut(s) 629
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 219, 222, 958
BsuRI GGCC 2 cut(s) 23, 917
BtgI CCRYGG 1 cut(s) 55
BtgZI GCGATG 2 cut(s) 122, 339
BtsCI GGATG 2 cut(s) 505, 592
Cac8I GCNNGC 2 cut(s) 564, 738
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 21, 625, 941
CviAII CATG 7 cut(s) 56, 131, 301, 467, 827, 913, 925
DdeI CTNAG 3 cut(s) 217, 710, 834
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 625, 941
Eco57I CTGAAG 2 cut(s) 162, 903
EcoO109I RGGNCCY 2 cut(s) 625, 941
EcoRII CCWGG 3 cut(s) 191, 295, 1033
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 7 cut(s) 59, 134, 304, 470, 830, 916, 928
FaqI GGGAC 2 cut(s) 791, 954
FatI CATG 7 cut(s) 55, 130, 300, 466, 826, 912, 924
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 4 cut(s) 208, 211, 918, 972
FokI GGATG 2 cut(s) 512, 579
Fsp4HI GCNGC 4 cut(s) 208, 211, 918, 972
FspBI CTAG 4 cut(s) 96, 321, 443, 815
GluI GCNGC 4 cut(s) 208, 211, 918, 972
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 23, 917
Hin1II CATG 7 cut(s) 59, 134, 304, 470, 830, 916, 928
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 5 cut(s) 335, 706, 876, 960, 1003
HphI GGTGA 1 cut(s) 815
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188I TCNGA 4 cut(s) 181, 272, 340, 883
Hpy188III TCNNGA 3 cut(s) 83, 131, 596
Hpy8I GTNNAC 1 cut(s) 1045
HpyAV CCTTC 5 cut(s) 61, 128, 215, 878, 931
HpyCH4III ACNGT 1 cut(s) 1069
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 3 cut(s) 519, 631, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 980, 989
HpyF3I CTNAG 3 cut(s) 217, 710, 834
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 7 cut(s) 59, 134, 304, 470, 830, 916, 928
KflI GGGWCCC 1 cut(s) 941
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 1 cut(s) 693
Lsp1109I GCAGC 3 cut(s) 219, 222, 958
MaeI CTAG 4 cut(s) 96, 321, 443, 815
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 1063
MalI GATC 1 cut(s) 695
MboI GATC 1 cut(s) 693
MboII GAAGA 9 cut(s) 170, 238, 241, 269, 428, 431, 569, 572, 860
MluCI AATT 7 cut(s) 144, 161, 503, 674, 797, 857, 1095
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 2 cut(s) 66, 677
MseI TTAA 5 cut(s) 68, 384, 455, 677, 699
MspR9I CCNGG 3 cut(s) 193, 297, 1035
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 3 cut(s) 193, 297, 1035
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 467, 980, 989
NcoI CCATGG 1 cut(s) 55
NdeII GATC 1 cut(s) 693
NlaIII CATG 7 cut(s) 59, 134, 304, 470, 830, 916, 928
NlaIV GGNNCC 3 cut(s) 783, 942, 943
NmeAIII GCCGAG 1 cut(s) 127
PagI TCATGA 1 cut(s) 130
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 4 cut(s) 335, 876, 960, 1003
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 4 cut(s) 209, 212, 919, 973
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PpuMI RGGWCCY 2 cut(s) 625, 941
PshBI ATTAAT 1 cut(s) 699
Psp5II RGGWCCY 2 cut(s) 625, 941
Psp6I CCWGG 3 cut(s) 191, 295, 1033
PspGI CCWGG 3 cut(s) 191, 295, 1033
PspN4I GGNNCC 3 cut(s) 783, 942, 943
PspPI GGNCC 3 cut(s) 21, 625, 941
PspPPI RGGWCCY 2 cut(s) 625, 941
PstI CTGCAG 1 cut(s) 633
SaqAI TTAA 5 cut(s) 68, 384, 455, 677, 699
SatI GCNGC 4 cut(s) 208, 211, 918, 972
Sau3AI GATC 1 cut(s) 693
Sau96I GGNCC 3 cut(s) 21, 625, 941
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 3 cut(s) 193, 297, 1035
SfcI CTRYAG 1 cut(s) 629
SinI GGWCC 2 cut(s) 625, 941
Sse9I AATT 7 cut(s) 144, 161, 503, 674, 797, 857, 1095
SsiI CCGC 1 cut(s) 918
SspI AATATT 1 cut(s) 267
SspMI CTAG 4 cut(s) 96, 321, 443, 815
StyD4I CCNGG 3 cut(s) 191, 295, 1033
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 1069
TaiI ACGT 1 cut(s) 527
TasI AATT 7 cut(s) 144, 161, 503, 674, 797, 857, 1095
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 4 cut(s) 335, 876, 960, 1003
Tru1I TTAA 5 cut(s) 68, 384, 455, 677, 699
Tru9I TTAA 5 cut(s) 68, 384, 455, 677, 699
TseI GCWGC 3 cut(s) 207, 210, 971
TspDTI ATGAA 6 cut(s) 147, 263, 358, 516, 843, 913
VpaK11BI GGWCC 2 cut(s) 625, 941
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 161, 857
XspI CTAG 4 cut(s) 96, 321, 443, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.