Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

106823 .. 109978

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G000800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTTCCGAGACTGATGCAGGCTCCCCACGAAGGAATTGCTGGTCAGGAAGATATGCAAGGTCACAGAGGAGACCCTTGCCTCGTTTTAACTTCCGATCCCAAACCCCGTCTTCGCTGGACTGCTGACCTTCATGAACGATTTGTCGATGCCGTCACTCAGCTTGGCGGTTCATCTAAAGCTACGCCAAAGGCTATTATGCGGACAATGAATGTGAAGGGGCTGACCCTTTTTCATTTGAAGAGTCATCTGCAGAAATACAGACTAGGTAAGCAATCAGGGAAGGAAATGGGCGATGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGCAATTCTTCGCCAAATTTGCCAACTTCTGATTTAAATGAGGGTTATGAAGTCAAAGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAATTACATGTGCAAGTTGAGGCCGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCAATGCTTGAGAGAGCTTGTAAGATGCTTGCTGATCAATTTATTGGAGGTTCAGTTACTGATACAGACAGTCATAAGTGTCATGGATTGGGGAATAAGAACACAAAAGGTCCCTCCCTTGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCTGCAGTTCATGGTCCAGAAGAAGAAGTGCCGACTAGTATCCATACCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTGACCTTGGAAGGATCTCCTGGTGGCGGGAAAAAAAGAATGTTGAGCTTGGACTCCGCAGCTGCATCTTTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATGTAGCCGCAGTCAATCCTCATGGTATTGCTAGGTATGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

306

Amino Acids

33.18

Weight (kDa)

6.67

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	168, 202, 789, 819, 879
AclWI	GGATC	2 cut(s)	92, 784
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	32, 338, 788
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	4 cut(s)	331, 474, 754, 781
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	6 cut(s)	163, 182, 515, 732, 810, 824
AluI	AGCT	6 cut(s)	163, 182, 515, 732, 810, 824
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	2 cut(s)	4, 66
AlwI	GGATC	2 cut(s)	92, 784
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	4 cut(s)	659, 732, 821, 824
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	608, 671
AsuHPI	GGTGA	2 cut(s)	854, 865
AvaII	GGWCC	2 cut(s)	608, 671
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	646, 719, 811, 833
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	3 cut(s)	20, 32, 54
BciT130I	CCWGG	4 cut(s)	333, 476, 756, 783
BciVI	GTATCC	2 cut(s)	310, 707
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	4, 66
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	4 cut(s)	266, 323, 693, 903
BfmI	CTRYAG	2 cut(s)	251, 660
BfuI	GTATCC	2 cut(s)	310, 707
BisI	GCNGC	5 cut(s)	660, 733, 822, 825, 879
BlsI	GCNGC	5 cut(s)	661, 734, 823, 826, 880
Bme1390I	CCNGG	4 cut(s)	333, 476, 756, 783
Bme18I	GGWCC	2 cut(s)	608, 671
BmgT120I	GGNCC	2 cut(s)	608, 671
BmiI	GGNNCC	2 cut(s)	24, 610
BmrFI	CCNGG	4 cut(s)	333, 476, 756, 783
BmsI	GCATC	6 cut(s)	6, 139, 298, 469, 513, 836
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	303, 331, 768, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 338, 788
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	4 cut(s)	333, 476, 756, 783
BseDI	CCNNGG	4 cut(s)	303, 331, 768, 849
BseGI	GGATG	2 cut(s)	313, 484
BseLI	CCNNNNNNNGG	3 cut(s)	32, 338, 788
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	646, 719, 811, 833
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	3 cut(s)	32, 338, 788
BsmAI	GTCTC	2 cut(s)	4, 66
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	97, 532, 776
BspACI	CCGC	5 cut(s)	168, 202, 789, 819, 879
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	24, 610
BspMAI	CTGCAG	2 cut(s)	255, 664
BspPI	GGATC	2 cut(s)	92, 784
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	4 cut(s)	303, 331, 768, 849
BssMI	GATC	3 cut(s)	97, 532, 776
BssT1I	CCWWGG	3 cut(s)	303, 768, 849
Bst2UI	CCWGG	4 cut(s)	333, 476, 756, 783
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	21, 528
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	313, 484
BstKTI	GATC	3 cut(s)	100, 535, 779
BstMAI	GTCTC	2 cut(s)	4, 66
BstMBI	GATC	3 cut(s)	97, 532, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 407
BstNI	CCWGG	4 cut(s)	333, 476, 756, 783
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	331, 474, 754, 781
BstSFI	CTRYAG	2 cut(s)	251, 660
BstV1I	GCAGC	4 cut(s)	646, 719, 811, 833
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	776
BsuI	GTATCC	2 cut(s)	310, 707
BsuRI	GGCC	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	313, 484
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	2 cut(s)	21, 528
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	608, 671
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	6 cut(s)	134, 437, 581, 668, 746, 893
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	99, 534, 778
DpnII	GATC	3 cut(s)	97, 532, 776
DraI	TTTAAA	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	303, 768, 849
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	608, 671
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	331, 474, 754, 781
EcoT14I	CCWWGG	3 cut(s)	303, 768, 849
ErhI	CCWWGG	3 cut(s)	303, 768, 849
FaeI	CATG	6 cut(s)	137, 440, 584, 671, 749, 896
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	6 cut(s)	133, 436, 580, 667, 745, 892
FauI	CCCGC	1 cut(s)	782
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	5 cut(s)	660, 733, 822, 825, 879
FokI	GGATG	2 cut(s)	320, 491
Fsp4HI	GCNGC	5 cut(s)	660, 733, 822, 825, 879
FspBI	CTAG	4 cut(s)	266, 323, 693, 903
GluI	GCNGC	5 cut(s)	660, 733, 822, 825, 879
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	1 cut(s)	452
Hin1II	CATG	6 cut(s)	137, 440, 584, 671, 749, 896
HinfI	GANTC	4 cut(s)	244, 469, 751, 815
HphI	GGTGA	2 cut(s)	854, 865
Hpy188I	TCNGA	3 cut(s)	9, 97, 370
Hpy188III	TCNNGA	4 cut(s)	47, 134, 323, 674
HpyAV	CCTTC	6 cut(s)	26, 140, 211, 277, 329, 767
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4V	TGCA	9 cut(s)	19, 58, 253, 424, 442, 466, 482, 662, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 407
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	137, 440, 584, 671, 749, 896
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	97, 532, 776
LmnI	GCTCC	2 cut(s)	28, 725
Lsp1109I	GCAGC	4 cut(s)	646, 719, 811, 833
LweI	GCATC	6 cut(s)	6, 139, 298, 469, 513, 836
MaeI	CTAG	4 cut(s)	266, 323, 693, 903
MaeIII	GTNAC	3 cut(s)	62, 154, 553
MalI	GATC	3 cut(s)	99, 534, 778
MboI	GATC	3 cut(s)	97, 532, 776
MboII	GAAGA	7 cut(s)	62, 104, 253, 339, 501, 689, 692
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	6 cut(s)	36, 343, 355, 431, 536, 834
MlyI	GAGTC	3 cut(s)	253, 760, 809
MseI	TTAA	5 cut(s)	89, 374, 404, 833, 870
MslI	CAYNNNNRTG	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	824
MspR9I	CCNGG	4 cut(s)	333, 476, 756, 783
MvaI	CCWGG	4 cut(s)	333, 476, 756, 783
MwoI	GCNNNNNNNGC	2 cut(s)	358, 407
NdeII	GATC	3 cut(s)	97, 532, 776
NlaIII	CATG	6 cut(s)	137, 440, 584, 671, 749, 896
NlaIV	GGNNCC	2 cut(s)	24, 610
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	2 cut(s)	62, 154
NspI	RCATGY	1 cut(s)	440
OliI	CACNNNNGTG	1 cut(s)	653
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	661, 734, 823, 826, 880
PleI	GAGTC	3 cut(s)	252, 759, 809
PpsI	GAGTC	3 cut(s)	252, 759, 809
PpuMI	RGGWCCY	1 cut(s)	608
PscI	ACATGT	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	331, 474, 754, 781
PspGI	CCWGG	4 cut(s)	331, 474, 754, 781
PspN4I	GGNNCC	2 cut(s)	24, 610
PspPI	GGNCC	2 cut(s)	608, 671
PspPPI	RGGWCCY	1 cut(s)	608
PstI	CTGCAG	2 cut(s)	255, 664
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	5 cut(s)	89, 374, 404, 833, 870
SatI	GCNGC	5 cut(s)	660, 733, 822, 825, 879
Sau3AI	GATC	3 cut(s)	97, 532, 776
Sau96I	GGNCC	2 cut(s)	608, 671
SchI	GAGTC	3 cut(s)	253, 760, 809
ScrFI	CCNGG	4 cut(s)	333, 476, 756, 783
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	6 cut(s)	6, 139, 298, 469, 513, 836
SfcI	CTRYAG	2 cut(s)	251, 660
SinI	GGWCC	2 cut(s)	608, 671
SmiI	ATTTAAAT	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	6 cut(s)	36, 343, 355, 431, 536, 834
SsiI	CCGC	5 cut(s)	168, 202, 789, 819, 879
SspMI	CTAG	4 cut(s)	266, 323, 693, 903
StyD4I	CCNGG	4 cut(s)	331, 474, 754, 781
StyI	CCWWGG	3 cut(s)	303, 768, 849
SwaI	ATTTAAAT	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	147
TasI	AATT	6 cut(s)	36, 343, 355, 431, 536, 834
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	5 cut(s)	89, 374, 404, 833, 870
Tru9I	TTAA	5 cut(s)	89, 374, 404, 833, 870
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	2 cut(s)	62, 154
TseI	GCWGC	4 cut(s)	659, 732, 821, 824
Tsp45I	GTSAC	2 cut(s)	62, 154
TspDTI	ATGAA	8 cut(s)	122, 150, 162, 224, 224, 303, 402, 656
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	2 cut(s)	608, 671
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	4 cut(s)	266, 323, 693, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.