Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

133617 .. 136553

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTCCGAGACTGATGCAGCCTCCTCCGCCTCCTCCTCCTCCTCCTCCGCTCGATGGAATTGAAGATATGCAAGGTCACAATCACCGAGCAGACCCTTGCCTCGTCTTGACTTCCGATCCCAAACCCCGTCTCCGCTGGACTGCTGACCTTCACGAACGATTTGTCGACGCAGTCACTCAACTTGGTGGCGCCGCTAAAGCTACGCCCAAGGCCATTATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAGAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGGCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATATCATGGCTTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCACTACAATCCACAGATGTGGCTGGAGTTCATGGTCCAGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGGTGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATCTAGCCCCAGTTGAGCCTCATGGAATTACAAGGTATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

34.14

Weight (kDa)

6.36

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	44 - 95	1.7e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	137 - 182	3.5e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccBSI	CCGCTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	4 cut(s)	29, 50, 136, 195
AclWI	GGATC	2 cut(s)	113, 805
AcoI	YGGCCR	2 cut(s)	519, 589
AcsI	RAATTY	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	358, 444
AfiI	CCNNNNNNNGG	3 cut(s)	56, 359, 809
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	4 cut(s)	352, 495, 775, 802
AleI	CACNNNNGTG	1 cut(s)	674
AluBI	AGCT	4 cut(s)	203, 536, 753, 831
AluI	AGCT	4 cut(s)	203, 536, 753, 831
Alw26I	GTCTC	2 cut(s)	4, 137
AlwI	GGATC	2 cut(s)	113, 805
AoxI	GGCC	3 cut(s)	213, 519, 589
ApeKI	GCWGC	2 cut(s)	19, 753
ApoI	RAATTY	1 cut(s)	376
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	891
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	77, 875, 886
AvaII	GGWCC	1 cut(s)	692
BalI	TGGCCA	2 cut(s)	521, 591
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	31, 740
BccI	CCATC	3 cut(s)	50, 581, 729
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	354, 497, 777, 804
BciVI	GTATCC	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	4, 137
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	4 cut(s)	287, 344, 714, 896
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	3 cut(s)	20, 195, 754
BlsI	GCNGC	3 cut(s)	21, 196, 755
Bme1390I	CCNGG	4 cut(s)	354, 497, 777, 804
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	4 cut(s)	354, 497, 777, 804
BmrI	ACTGGG	1 cut(s)	896
BmsI	GCATC	5 cut(s)	6, 319, 490, 534, 857
BmuI	ACTGGG	1 cut(s)	896
BpmI	CTGGAG	3 cut(s)	702, 786, 798
BpuEI	CTTGAG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	210, 324, 352, 870
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 359, 809
Bse1I	ACTGG	2 cut(s)	364, 902
BseBI	CCWGG	4 cut(s)	354, 497, 777, 804
BseDI	CCNNGG	4 cut(s)	210, 324, 352, 870
BseGI	GGATG	4 cut(s)	319, 334, 505, 721
BseLI	CCNNNNNNNGG	3 cut(s)	56, 359, 809
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	364, 902
BseRI	GAGGAG	6 cut(s)	15, 24, 27, 30, 33, 36
BseXI	GCAGC	2 cut(s)	31, 740
BshFI	GGCC	3 cut(s)	215, 521, 591
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	56, 359, 809
BsmAI	GTCTC	2 cut(s)	4, 137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	215, 521, 591
Bsp143I	GATC	3 cut(s)	118, 553, 797
BspACI	CCGC	4 cut(s)	29, 50, 136, 195
BspANI	GGCC	3 cut(s)	215, 521, 591
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	113, 805
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	364, 902
BssECI	CCNNGG	4 cut(s)	210, 324, 352, 870
BssMI	GATC	3 cut(s)	118, 553, 797
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	3 cut(s)	210, 324, 870
Bst2UI	CCWGG	4 cut(s)	354, 497, 777, 804
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	297, 549
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	4 cut(s)	319, 334, 505, 721
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	121, 556, 800
BstMAI	GTCTC	2 cut(s)	4, 137
BstMBI	GATC	3 cut(s)	118, 553, 797
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 200, 292
BstNI	CCWGG	4 cut(s)	354, 497, 777, 804
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	4 cut(s)	352, 495, 775, 802
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	31, 740
BstX2I	RGATCY	1 cut(s)	797
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	797
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	215, 521, 591
BtsCI	GGATG	4 cut(s)	319, 334, 505, 721
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	2 cut(s)	297, 549
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	357, 443
CviAII	CATG	6 cut(s)	458, 523, 602, 689, 767, 914
CviQI	GTAC	2 cut(s)	357, 443
DdeI	CTNAG	1 cut(s)	474
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	120, 555, 799
DpnII	GATC	3 cut(s)	118, 553, 797
DraI	TTTAAA	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	519, 589
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	3 cut(s)	210, 324, 870
Eco47I	GGWCC	1 cut(s)	692
EcoRII	CCWGG	4 cut(s)	352, 495, 775, 802
EcoT14I	CCWWGG	3 cut(s)	210, 324, 870
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	3 cut(s)	210, 324, 870
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	6 cut(s)	461, 526, 605, 692, 770, 917
FatI	CATG	6 cut(s)	457, 522, 601, 688, 766, 913
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	20, 195, 754
FokI	GGATG	4 cut(s)	326, 341, 512, 708
Fsp4HI	GCNGC	3 cut(s)	20, 195, 754
FspBI	CTAG	4 cut(s)	287, 344, 714, 896
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	20, 195, 754
GsuI	CTGGAG	3 cut(s)	702, 786, 798
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	215, 521, 591
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	461, 526, 605, 692, 770, 917
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	265, 490, 619, 772, 836
HphI	GGTGA	3 cut(s)	77, 875, 886
Hpy166II	GTNNAC	2 cut(s)	169, 452
Hpy188I	TCNGA	3 cut(s)	9, 118, 391
Hpy188III	TCNNGA	4 cut(s)	109, 155, 344, 695
Hpy8I	GTNNAC	2 cut(s)	169, 452
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	161, 350, 788
HpyCH4V	TGCA	7 cut(s)	19, 73, 433, 463, 487, 503, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 200, 292
HpyF3I	CTNAG	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	461, 526, 605, 692, 770, 917
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	118, 553, 797
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	2 cut(s)	31, 740
LweI	GCATC	5 cut(s)	6, 319, 490, 534, 857
MaeI	CTAG	4 cut(s)	287, 344, 714, 896
MaeIII	GTNAC	2 cut(s)	77, 175
MalI	GATC	3 cut(s)	120, 555, 799
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	3 cut(s)	118, 553, 797
MboII	GAAGA	5 cut(s)	77, 360, 522, 710, 713
MflI	RGATCY	1 cut(s)	797
MlsI	TGGCCA	2 cut(s)	521, 591
MluCI	AATT	6 cut(s)	60, 364, 376, 557, 855, 918
MluNI	TGGCCA	2 cut(s)	521, 591
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	274, 781, 845
Mox20I	TGGCCA	2 cut(s)	521, 591
MscI	TGGCCA	2 cut(s)	521, 591
MseI	TTAA	2 cut(s)	260, 891
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	2 cut(s)	521, 591
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	4 cut(s)	354, 497, 777, 804
MvaI	CCWGG	4 cut(s)	354, 497, 777, 804
MwoI	GCNNNNNNNGC	3 cut(s)	28, 200, 292
NarI	GGCGCC	1 cut(s)	192
NdeII	GATC	3 cut(s)	118, 553, 797
NlaIII	CATG	6 cut(s)	461, 526, 605, 692, 770, 917
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	77, 175
NspI	RCATGY	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	674
PciI	ACATGT	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	490, 619
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	809
PfoI	TCCNGGA	1 cut(s)	775
PkrI	GCNGC	3 cut(s)	21, 196, 755
PleI	GAGTC	3 cut(s)	273, 780, 844
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	3 cut(s)	273, 780, 844
PscI	ACATGT	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	891
Psp6I	CCWGG	4 cut(s)	352, 495, 775, 802
PspGI	CCWGG	4 cut(s)	352, 495, 775, 802
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	797
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	2 cut(s)	358, 444
RsaNI	GTAC	2 cut(s)	357, 443
RseI	CAYNNNNRTG	1 cut(s)	674
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	260, 891
SatI	GCNGC	3 cut(s)	20, 195, 754
Sau3AI	GATC	3 cut(s)	118, 553, 797
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	3 cut(s)	274, 781, 845
ScrFI	CCNGG	4 cut(s)	354, 497, 777, 804
SfaNI	GCATC	5 cut(s)	6, 319, 490, 534, 857
SfcI	CTRYAG	1 cut(s)	272
SfoI	GGCGCC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	6 cut(s)	60, 364, 376, 557, 855, 918
SsiI	CCGC	4 cut(s)	29, 50, 136, 195
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	4 cut(s)	287, 344, 714, 896
StyD4I	CCNGG	4 cut(s)	352, 495, 775, 802
StyI	CCWWGG	3 cut(s)	210, 324, 870
TaqI	TCGA	3 cut(s)	54, 168, 639
TasI	AATT	6 cut(s)	60, 364, 376, 557, 855, 918
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	490, 619
Tru1I	TTAA	2 cut(s)	260, 891
Tru9I	TTAA	2 cut(s)	260, 891
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	2 cut(s)	77, 175
TseI	GCWGC	2 cut(s)	19, 753
Tsp45I	GTSAC	2 cut(s)	77, 175
TspDTI	ATGAA	6 cut(s)	245, 245, 324, 410, 423, 677
TspRI	CASTG	1 cut(s)	751
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	4 cut(s)	287, 344, 714, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.