Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

239328 .. 242783

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTCCGAGACTGATGCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCGATGGAATTGAAGATATGCAAGGTCACAATCACCGAGCAGACCCTTGCCTCGTCTTGACTTCCGATCCCAAACCCCGTCTCCGCTGGACTGCTGACCTTCACGAACGATTTGTCGACGCAGTCACTCAACTCGGTGGCGCCGCTAAAGCTACGCCCAAGGCCATTATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAAAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGCCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCATGGCTTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCTGGAGTTCATGGTCTGGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGATGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATCTAGCCCCAGTTGAGCCTCATGGAATTACTAGGTATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

314

Amino Acids

34.38

Weight (kDa)

6.23

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	46 - 97	1.7e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	139 - 184	3.6e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccBSI	CCGCTC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	56, 142, 201
AclWI	GGATC	2 cut(s)	119, 811
AcoI	YGGCCR	2 cut(s)	525, 595
AcsI	RAATTY	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	364, 450
AfiI	CCNNNNNNNGG	3 cut(s)	62, 365, 815
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	719
AjnI	CCWGG	4 cut(s)	358, 501, 781, 808
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	4 cut(s)	209, 542, 759, 837
AluI	AGCT	4 cut(s)	209, 542, 759, 837
Alw26I	GTCTC	2 cut(s)	4, 143
AlwI	GGATC	2 cut(s)	119, 811
AoxI	GGCC	3 cut(s)	219, 525, 595
ApeKI	GCWGC	2 cut(s)	19, 759
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	83, 824, 881, 892
BalI	TGGCCA	2 cut(s)	527, 597
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	31, 746
BccI	CCATC	4 cut(s)	56, 587, 735, 809
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	360, 503, 783, 810
BciVI	GTATCC	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	4, 143
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	5 cut(s)	293, 350, 720, 902, 930
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	20, 201, 760
BlsI	GCNGC	3 cut(s)	21, 202, 761
Bme1390I	CCNGG	4 cut(s)	360, 503, 783, 810
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	4 cut(s)	360, 503, 783, 810
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	5 cut(s)	6, 325, 496, 540, 863
BmuI	ACTGGG	1 cut(s)	902
BpmI	CTGGAG	3 cut(s)	708, 792, 804
BpuEI	CTTGAG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	4 cut(s)	216, 330, 358, 876
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 365, 815
Bse1I	ACTGG	2 cut(s)	370, 908
BseBI	CCWGG	4 cut(s)	360, 503, 783, 810
BseDI	CCNNGG	4 cut(s)	216, 330, 358, 876
BseGI	GGATG	4 cut(s)	325, 340, 511, 727
BseLI	CCNNNNNNNGG	3 cut(s)	62, 365, 815
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	370, 908
BseXI	GCAGC	2 cut(s)	31, 746
BshFI	GGCC	3 cut(s)	221, 527, 597
BshNI	GGYRCC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	62, 365, 815
BsmAI	GTCTC	2 cut(s)	4, 143
BsmBI	CGTCTC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	221, 527, 597
Bsp143I	GATC	3 cut(s)	124, 559, 803
BspACI	CCGC	3 cut(s)	56, 142, 201
BspANI	GGCC	3 cut(s)	221, 527, 597
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	119, 811
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	370, 908
BssECI	CCNNGG	4 cut(s)	216, 330, 358, 876
BssMI	GATC	3 cut(s)	124, 559, 803
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	216, 330, 876
Bst2UI	CCWGG	4 cut(s)	360, 503, 783, 810
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	303, 555
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	325, 340, 511, 727
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	127, 562, 806
BstMAI	GTCTC	2 cut(s)	4, 143
BstMBI	GATC	3 cut(s)	124, 559, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 298, 385
BstNI	CCWGG	4 cut(s)	360, 503, 783, 810
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	358, 501, 781, 808
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	31, 746
BstX2I	RGATCY	1 cut(s)	803
BstXI	CCANNNNNNTGG	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	803
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	221, 527, 597
BtsCI	GGATG	4 cut(s)	325, 340, 511, 727
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	303, 555
CfoI	GCGC	1 cut(s)	200
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	363, 449
CviAII	CATG	6 cut(s)	464, 529, 608, 695, 773, 920
CviQI	GTAC	2 cut(s)	363, 449
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	126, 561, 805
DpnII	GATC	3 cut(s)	124, 559, 803
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	525, 595
Eco130I	CCWWGG	3 cut(s)	216, 330, 876
EcoRII	CCWGG	4 cut(s)	358, 501, 781, 808
EcoT14I	CCWWGG	3 cut(s)	216, 330, 876
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	3 cut(s)	216, 330, 876
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	6 cut(s)	467, 532, 611, 698, 776, 923
FatI	CATG	6 cut(s)	463, 528, 607, 694, 772, 919
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	20, 201, 760
FokI	GGATG	4 cut(s)	332, 347, 518, 714
Fsp4HI	GCNGC	3 cut(s)	20, 201, 760
FspBI	CTAG	5 cut(s)	293, 350, 720, 902, 930
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	20, 201, 760
GsuI	CTGGAG	3 cut(s)	708, 792, 804
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	221, 527, 597
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	6 cut(s)	467, 532, 611, 698, 776, 923
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	496, 625, 778, 842
HphI	GGTGA	4 cut(s)	83, 824, 881, 892
Hpy166II	GTNNAC	2 cut(s)	175, 458
Hpy188I	TCNGA	3 cut(s)	9, 124, 397
Hpy188III	TCNNGA	4 cut(s)	115, 161, 350, 701
Hpy8I	GTNNAC	2 cut(s)	175, 458
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	167, 356, 794
HpyCH4V	TGCA	7 cut(s)	19, 79, 439, 469, 493, 509, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 298, 385
HpyF3I	CTNAG	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	467, 532, 611, 698, 776, 923
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	124, 559, 803
LmnI	GCTCC	1 cut(s)	752
Lsp1109I	GCAGC	2 cut(s)	31, 746
LweI	GCATC	5 cut(s)	6, 325, 496, 540, 863
MaeI	CTAG	5 cut(s)	293, 350, 720, 902, 930
MaeIII	GTNAC	2 cut(s)	83, 181
MalI	GATC	3 cut(s)	126, 561, 805
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	124, 559, 803
MboII	GAAGA	5 cut(s)	83, 366, 528, 716, 719
MflI	RGATCY	1 cut(s)	803
MlsI	TGGCCA	2 cut(s)	527, 597
MluCI	AATT	6 cut(s)	66, 370, 382, 563, 861, 924
MluNI	TGGCCA	2 cut(s)	527, 597
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	787, 851
Mox20I	TGGCCA	2 cut(s)	527, 597
MscI	TGGCCA	2 cut(s)	527, 597
MseI	TTAA	2 cut(s)	266, 897
MslI	CAYNNNNRTG	1 cut(s)	680
Msp20I	TGGCCA	2 cut(s)	527, 597
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	4 cut(s)	360, 503, 783, 810
MvaI	CCWGG	4 cut(s)	360, 503, 783, 810
MwoI	GCNNNNNNNGC	3 cut(s)	206, 298, 385
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	3 cut(s)	124, 559, 803
NlaIII	CATG	6 cut(s)	467, 532, 611, 698, 776, 923
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	83, 181
NspI	RCATGY	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	680
PciI	ACATGT	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	496, 625
PflFI	GACNNNGTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	3 cut(s)	21, 202, 761
PleI	GAGTC	2 cut(s)	786, 850
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	2 cut(s)	786, 850
PscI	ACATGT	1 cut(s)	463
PshBI	ATTAAT	1 cut(s)	897
Psp6I	CCWGG	4 cut(s)	358, 501, 781, 808
PspGI	CCWGG	4 cut(s)	358, 501, 781, 808
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	364, 450
RsaNI	GTAC	2 cut(s)	363, 449
RseI	CAYNNNNRTG	1 cut(s)	680
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	266, 897
SatI	GCNGC	3 cut(s)	20, 201, 760
Sau3AI	GATC	3 cut(s)	124, 559, 803
SchI	GAGTC	2 cut(s)	787, 851
ScrFI	CCNGG	4 cut(s)	360, 503, 783, 810
SfaNI	GCATC	5 cut(s)	6, 325, 496, 540, 863
SfcI	CTRYAG	1 cut(s)	278
SfoI	GGCGCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	6 cut(s)	66, 370, 382, 563, 861, 924
SsiI	CCGC	3 cut(s)	56, 142, 201
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	5 cut(s)	293, 350, 720, 902, 930
StyD4I	CCNGG	4 cut(s)	358, 501, 781, 808
StyI	CCWWGG	3 cut(s)	216, 330, 876
TaqI	TCGA	3 cut(s)	60, 174, 645
TasI	AATT	6 cut(s)	66, 370, 382, 563, 861, 924
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	496, 625
Tru1I	TTAA	2 cut(s)	266, 897
Tru9I	TTAA	2 cut(s)	266, 897
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	2 cut(s)	83, 181
TseI	GCWGC	2 cut(s)	19, 759
Tsp45I	GTSAC	2 cut(s)	83, 181
TspDTI	ATGAA	6 cut(s)	251, 251, 330, 416, 429, 683
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	897
XapI	RAATTY	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	5 cut(s)	293, 350, 720, 902, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.