Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

32221520 .. 32221819

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g33050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTTGGCTTCTACTCGTCGCAATCCACAGATGCTGTTGGGGTTCATGGTATAGGTGAAGAGCTGCCAATTTGCATCCATACCCAGAGAGCTGATTGCTCCACTGAAAGCTGCCTCACGTCACATGAGAGTCCTGGAGGACTGACCTTGGAAGGATCTCCAGGTGGCGGAAAAAAAAGAATGTTGAGCCTGGACAACGGCAATGGATCTTTAATTTGGGGCGAAGCCAAGGTGAGAACCCGAGAGATTAGTGTAGCCCCAACTGATCCTCCTCATGGTATTGCTACGTATGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

100

Amino Acids

10.33

Weight (kDa)

5.41

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	3 cut(s)	163, 214, 260
AfiI	CCNNNNNNNGG	2 cut(s)	167, 275
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	3 cut(s)	133, 160, 189
AluBI	AGCT	3 cut(s)	64, 92, 111
AluI	AGCT	3 cut(s)	64, 92, 111
AlwI	GGATC	3 cut(s)	163, 214, 260
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	64, 111
AsuHPI	GGTGA	2 cut(s)	68, 244
AvaI	CYCGRG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	51, 98
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	135, 162, 191
BisI	GCNGC	2 cut(s)	65, 112
BlsI	GCNGC	2 cut(s)	66, 113
Bme1390I	CCNGG	3 cut(s)	135, 162, 191
BmeT110I	CYCGRG	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	135, 162, 191
BmsI	GCATC	2 cut(s)	22, 84
BpmI	CTGGAG	2 cut(s)	144, 156
BsaAI	YACGTR	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	147, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 275
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	3 cut(s)	135, 162, 191
BseDI	CCNNGG	2 cut(s)	147, 228
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	167, 275
BseMI	GCAATG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	51, 98
BsiHKCI	CYCGRG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	167, 275
BsoBI	CYCGRG	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	155, 206, 265
BspACI	CCGC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	163, 214, 260
BspQI	GCTCTTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	147, 228
BssMI	GATC	3 cut(s)	155, 206, 265
BssT1I	CCWWGG	2 cut(s)	147, 228
Bst2UI	CCWGG	3 cut(s)	135, 162, 191
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	3 cut(s)	158, 209, 268
BstMBI	GATC	3 cut(s)	155, 206, 265
BstNI	CCWGG	3 cut(s)	135, 162, 191
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	133, 160, 189
BstSNI	TACGTA	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	51, 98
BstX2I	RGATCY	2 cut(s)	155, 206
BstYI	RGATCY	2 cut(s)	155, 206
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	35
CviAII	CATG	4 cut(s)	47, 125, 275, 295
CviJI	RGCY	7 cut(s)	9, 64, 92, 111, 189, 227, 257
CviKI_1	RGCY	7 cut(s)	9, 64, 92, 111, 189, 227, 257
DpnI	GATC	3 cut(s)	157, 208, 267
DpnII	GATC	3 cut(s)	155, 206, 265
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	147, 228
Eco88I	CYCGRG	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	133, 160, 189
EcoT14I	CCWWGG	2 cut(s)	147, 228
ErhI	CCWWGG	2 cut(s)	147, 228
FaeI	CATG	4 cut(s)	50, 128, 278, 298
FaiI	YATR	7 cut(s)	48, 53, 81, 126, 276, 291, 296
FatI	CATG	4 cut(s)	46, 124, 274, 294
Fnu4HI	GCNGC	2 cut(s)	65, 112
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	65, 112
GluI	GCNGC	2 cut(s)	65, 112
GsuI	CTGGAG	2 cut(s)	144, 156
Hin1II	CATG	4 cut(s)	50, 128, 278, 298
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	2 cut(s)	68, 244
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	119, 287
HpyCH4V	TGCA	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	119, 287
Hsp92II	CATG	4 cut(s)	50, 128, 278, 298
Kzo9I	GATC	3 cut(s)	155, 206, 265
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	98, 120, 147, 147, 174, 176, 203
Lsp1109I	GCAGC	2 cut(s)	51, 98
LweI	GCATC	2 cut(s)	22, 84
MaeII	ACGT	2 cut(s)	119, 287
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	3 cut(s)	157, 208, 267
MboI	GATC	3 cut(s)	155, 206, 265
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	2 cut(s)	155, 206
MluCI	AATT	2 cut(s)	69, 213
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	125, 131, 279, 282
MseI	TTAA	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	135, 162, 191
MvaI	CCWGG	3 cut(s)	135, 162, 191
NdeII	GATC	3 cut(s)	155, 206, 265
NlaIII	CATG	4 cut(s)	50, 128, 278, 298
NmuCI	GTSAC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	66, 113
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	133, 160, 189
PspGI	CCWGG	3 cut(s)	133, 160, 189
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	155, 206
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	2 cut(s)	65, 112
Sau3AI	GATC	3 cut(s)	155, 206, 265
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	3 cut(s)	135, 162, 191
SetI	ASST	9 cut(s)	58, 66, 94, 113, 122, 149, 166, 234, 290
SfaNI	GCATC	2 cut(s)	22, 84
SnaBI	TACGTA	1 cut(s)	288
Sse9I	AATT	2 cut(s)	69, 213
SsiI	CCGC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	133, 160, 189
StyI	CCWWGG	2 cut(s)	147, 228
TaiI	ACGT	2 cut(s)	122, 290
TasI	AATT	2 cut(s)	69, 213
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	2 cut(s)	64, 111
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.