Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

96509424 .. 96512559

Gene Structure 3136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTTCCGAGACTGATGCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCGAAGGAATTGAAGATATGCAAGGTCACAATCACCGAGCAGACCCTTGCCTCGTCTTGACTTCCGATCCCAAACCCCGTCTCCGCTGGACTGCTGACCTTCACGAACGATTTGTCGACGCAGTCACTCAACTTGGTGGCGCCGCTAAAGCTACGCCCAAGGCCATTATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAGAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGGATTGTCAGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGCCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCATGGCTTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCTGGAGTTCATGGTCCGGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGGTGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCTAAGGTGAGAACCCAAGAGATTAATCGAGCCCCAGTTGAGCCTCATGGAATTACAAGGTATGGCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

317

Amino Acids

34.6

Weight (kDa)

6.5

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	46 - 97	1.7e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	142 - 187	3.6e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	709
AciI	CCGC	3 cut(s)	56, 142, 201
AclWI	GGATC	2 cut(s)	119, 820
AcoI	YGGCCR	2 cut(s)	534, 604
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	373, 459
AfiI	CCNNNNNNNGG	3 cut(s)	62, 374, 824
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	4 cut(s)	367, 510, 790, 817
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	6 cut(s)	209, 347, 551, 768, 846, 884
AluI	AGCT	6 cut(s)	209, 347, 551, 768, 846, 884
Alw26I	GTCTC	2 cut(s)	4, 143
AlwI	GGATC	2 cut(s)	119, 820
Aor13HI	TCCGGA	1 cut(s)	709
AoxI	GGCC	3 cut(s)	219, 534, 604
ApeKI	GCWGC	2 cut(s)	19, 768
ApoI	RAATTY	1 cut(s)	391
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	83, 890, 901
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	2 cut(s)	536, 606
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	916
BbvI	GCAGC	2 cut(s)	31, 755
BccI	CCATC	3 cut(s)	329, 596, 744
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	369, 512, 792, 819
BciVI	GTATCC	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	4, 143
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	3 cut(s)	293, 359, 729
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	20, 201, 769
BlsI	GCNGC	3 cut(s)	21, 202, 770
Bme1390I	CCNGG	4 cut(s)	369, 512, 792, 819
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	4 cut(s)	369, 512, 792, 819
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	4 cut(s)	6, 505, 549, 872
BmuI	ACTGGG	1 cut(s)	911
BpmI	CTGGAG	3 cut(s)	717, 801, 813
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	216, 330, 367
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 374, 824
Bse1I	ACTGG	2 cut(s)	379, 917
BseAI	TCCGGA	1 cut(s)	709
BseBI	CCWGG	4 cut(s)	369, 512, 792, 819
BseDI	CCNNGG	3 cut(s)	216, 330, 367
BseGI	GGATG	4 cut(s)	325, 340, 520, 736
BseLI	CCNNNNNNNGG	3 cut(s)	62, 374, 824
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	379, 917
BseXI	GCAGC	2 cut(s)	31, 755
BshFI	GGCC	3 cut(s)	221, 536, 606
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	710
BslI	CCNNNNNNNGG	3 cut(s)	62, 374, 824
BsmAI	GTCTC	2 cut(s)	4, 143
BsmBI	CGTCTC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	221, 536, 606
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp13I	TCCGGA	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	124, 568, 812
BspACI	CCGC	3 cut(s)	56, 142, 201
BspANI	GGCC	3 cut(s)	221, 536, 606
BspCNI	CTCAG	1 cut(s)	481
BspEI	TCCGGA	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	119, 820
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	379, 917
BssECI	CCNNGG	3 cut(s)	216, 330, 367
BssMI	GATC	3 cut(s)	124, 568, 812
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	216, 330
Bst2UI	CCWGG	4 cut(s)	369, 512, 792, 819
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	303, 564
BstDEI	CTNAG	2 cut(s)	489, 885
BstF5I	GGATG	4 cut(s)	325, 340, 520, 736
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	127, 571, 815
BstMAI	GTCTC	2 cut(s)	4, 143
BstMBI	GATC	3 cut(s)	124, 568, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 298, 394
BstNI	CCWGG	4 cut(s)	369, 512, 792, 819
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	367, 510, 790, 817
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	31, 755
BstX2I	RGATCY	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	812
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	221, 536, 606
BtsCI	GGATG	4 cut(s)	325, 340, 520, 736
BtsIMutI	CAGTG	1 cut(s)	759
Cac8I	GCNNGC	2 cut(s)	303, 564
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	372, 458
CviAII	CATG	6 cut(s)	473, 538, 617, 704, 782, 929
CviQI	GTAC	2 cut(s)	372, 458
DdeI	CTNAG	2 cut(s)	489, 885
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	126, 570, 814
DpnII	GATC	3 cut(s)	124, 568, 812
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	534, 604
Eco130I	CCWWGG	2 cut(s)	216, 330
Eco24I	GRGCYC	1 cut(s)	916
Eco47I	GGWCC	1 cut(s)	707
EcoRII	CCWGG	4 cut(s)	367, 510, 790, 817
EcoT14I	CCWWGG	2 cut(s)	216, 330
EcoT38I	GRGCYC	1 cut(s)	916
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	216, 330
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	6 cut(s)	476, 541, 620, 707, 785, 932
FatI	CATG	6 cut(s)	472, 537, 616, 703, 781, 928
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	20, 201, 769
FokI	GGATG	4 cut(s)	332, 347, 527, 723
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	3 cut(s)	20, 201, 769
FspBI	CTAG	3 cut(s)	293, 359, 729
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	20, 201, 769
GsuI	CTGGAG	3 cut(s)	717, 801, 813
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	221, 536, 606
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	6 cut(s)	476, 541, 620, 707, 785, 932
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	271, 505, 634, 787, 851
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	3 cut(s)	83, 890, 901
Hpy166II	GTNNAC	2 cut(s)	175, 467
Hpy188I	TCNGA	3 cut(s)	9, 124, 406
Hpy188III	TCNNGA	4 cut(s)	115, 161, 359, 710
Hpy8I	GTNNAC	2 cut(s)	175, 467
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	4 cut(s)	56, 167, 365, 803
HpyCH4V	TGCA	7 cut(s)	19, 79, 448, 478, 502, 518, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 298, 394
HpyF3I	CTNAG	2 cut(s)	489, 885
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	476, 541, 620, 707, 785, 932
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	709
Kzo9I	GATC	3 cut(s)	124, 568, 812
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	2 cut(s)	31, 755
LweI	GCATC	4 cut(s)	6, 505, 549, 872
MaeI	CTAG	3 cut(s)	293, 359, 729
MaeIII	GTNAC	2 cut(s)	83, 181
MalI	GATC	3 cut(s)	126, 570, 814
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	124, 568, 812
MboII	GAAGA	5 cut(s)	83, 375, 537, 725, 728
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	1 cut(s)	916
MlsI	TGGCCA	2 cut(s)	536, 606
MluCI	AATT	6 cut(s)	66, 379, 391, 572, 870, 933
MluNI	TGGCCA	2 cut(s)	536, 606
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	280, 796, 860
Mox20I	TGGCCA	2 cut(s)	536, 606
MroI	TCCGGA	1 cut(s)	709
MscI	TGGCCA	2 cut(s)	536, 606
MseI	TTAA	2 cut(s)	266, 906
MslI	CAYNNNNRTG	1 cut(s)	689
Msp20I	TGGCCA	2 cut(s)	536, 606
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	4 cut(s)	369, 512, 792, 819
MvaI	CCWGG	4 cut(s)	369, 512, 792, 819
MwoI	GCNNNNNNNGC	3 cut(s)	206, 298, 394
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	3 cut(s)	124, 568, 812
NlaIII	CATG	6 cut(s)	476, 541, 620, 707, 785, 932
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	83, 181
NspI	RCATGY	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	689
PciI	ACATGT	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	505, 634
PflFI	GACNNNGTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	824
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	21, 202, 770
PleI	GAGTC	3 cut(s)	279, 795, 859
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	3 cut(s)	279, 795, 859
PscI	ACATGT	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	906
Psp6I	CCWGG	4 cut(s)	367, 510, 790, 817
PspGI	CCWGG	4 cut(s)	367, 510, 790, 817
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	812
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	373, 459
RsaNI	GTAC	2 cut(s)	372, 458
RseI	CAYNNNNRTG	1 cut(s)	689
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	266, 906
SatI	GCNGC	3 cut(s)	20, 201, 769
Sau3AI	GATC	3 cut(s)	124, 568, 812
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	3 cut(s)	280, 796, 860
ScrFI	CCNGG	4 cut(s)	369, 512, 792, 819
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	4 cut(s)	6, 505, 549, 872
SfcI	CTRYAG	1 cut(s)	278
SfoI	GGCGCC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	6 cut(s)	66, 379, 391, 572, 870, 933
SsiI	CCGC	3 cut(s)	56, 142, 201
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	293, 359, 729
StyD4I	CCNGG	4 cut(s)	367, 510, 790, 817
StyI	CCWWGG	2 cut(s)	216, 330
TaqI	TCGA	4 cut(s)	60, 174, 654, 910
TasI	AATT	6 cut(s)	66, 379, 391, 572, 870, 933
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	505, 634
Tru1I	TTAA	2 cut(s)	266, 906
Tru9I	TTAA	2 cut(s)	266, 906
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	2 cut(s)	83, 181
TseI	GCWGC	2 cut(s)	19, 768
Tsp45I	GTSAC	2 cut(s)	83, 181
TspDTI	ATGAA	6 cut(s)	251, 251, 339, 425, 438, 692
TspRI	CASTG	1 cut(s)	766
Tth111I	GACNNNGTC	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	3 cut(s)	293, 359, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.