Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027134.1

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

1550 .. 1966

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027134.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcttgagagagcttgtaagatgcttgccgatcaatttattggaggttcagtcattgatactgatggccataaatatcatggcttggggaataagaatccaaaaagttcctccctcgacccacttggcttctactcactacaatccacagatgtggctggagttcatggtccagaagaagaagtgctaacgagtgtccatccccaaagggctgattgctccactgaaagctgcctcacatcacatgagagtcctggaggactaactttggaaggatctccaggtggtgggaaaaaaagaatgttgagcttggagtcggcaactgcatctctaatttggggtgaagccaaggtgagaacccaagagattaatctagccccagttgagcctcatggaattacaaggtatggcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

138

Amino Acids

14.65

Weight (kDa)

5.62

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	287
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	253, 280
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	14, 231, 309
AluI	AGCT	3 cut(s)	14, 231, 309
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	231
AseI	ATTAAT	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	353, 364
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	59, 207
BciT130I	CCWGG	2 cut(s)	255, 282
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	255, 282
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	255, 282
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	12, 335
BmuI	ACTGGG	1 cut(s)	374
BpmI	CTGGAG	3 cut(s)	180, 264, 276
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	255, 282
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	218
BshFI	GGCC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	287
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	31, 275
BspANI	GGCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	31, 275
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	255, 282
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	34, 278
BstMBI	GATC	2 cut(s)	31, 275
BstNI	CCWGG	2 cut(s)	255, 282
BstSCI	CCNGG	2 cut(s)	253, 280
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	4 cut(s)	80, 167, 245, 392
DpnI	GATC	2 cut(s)	33, 277
DpnII	GATC	2 cut(s)	31, 275
EaeI	YGGCCR	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	253, 280
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	83, 170, 248, 395
FaiI	YATR	8 cut(s)	72, 81, 168, 246, 393, 408, 413, 415
FatI	CATG	4 cut(s)	79, 166, 244, 391
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	3 cut(s)	180, 264, 276
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	83, 170, 248, 395
HinfI	GANTC	3 cut(s)	97, 250, 314
HphI	GGTGA	2 cut(s)	353, 364
Hpy188III	TCNNGA	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	83, 170, 248, 395
Kzo9I	GATC	2 cut(s)	31, 275
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	144, 186, 240, 267, 267, 294, 393
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	12, 335
MaeI	CTAG	1 cut(s)	374
MalI	GATC	2 cut(s)	33, 277
MboI	GATC	2 cut(s)	31, 275
MboII	GAAGA	2 cut(s)	188, 191
MflI	RGATCY	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	3 cut(s)	35, 333, 396
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	259, 323
MnlI	CCTC	6 cut(s)	38, 121, 125, 245, 251, 399
Mox20I	TGGCCA	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	255, 282
MvaI	CCWGG	2 cut(s)	255, 282
NdeII	GATC	2 cut(s)	31, 275
NlaIII	CATG	4 cut(s)	83, 170, 248, 395
OliI	CACNNNNGTG	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	2 cut(s)	258, 322
PpsI	GAGTC	2 cut(s)	258, 322
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	253, 280
PspGI	CCWGG	2 cut(s)	253, 280
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	2 cut(s)	31, 275
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	259, 323
ScrFI	CCNGG	2 cut(s)	255, 282
SetI	ASST	7 cut(s)	16, 49, 233, 286, 311, 354, 407
SfaNI	GCATC	2 cut(s)	12, 335
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	3 cut(s)	35, 333, 396
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	253, 280
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	35, 333, 396
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.