Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Reverse (-)

148178 .. 151119

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTCCGAGACTGATGCAGCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCGATGGAATTGAAGATATGCAAGGTCACAATCACCGAGCAGACCCTTGCCTCGTCTTGACTTCCGATCCCAAACCCCGTCTCCGCTGGACTGCTGACCTTCACGAACGATTTGTCGACGCAGTCACTCAACTTGGTGGCGCCGCCAAAGCTACGCCCAAGGCCATTATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAGAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGCCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAGATGGAAGTGCAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCATGGCTTGGGGAATAAGAATCCAAAAAGCTCCTCCCTCGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCAGGAGTTCATGGTCCGGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGGTGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATCTAGCCCCAGTTGAGCCTCATGGAATTACAAGGCTTGAAAACCATAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

315

Amino Acids

34.44

Weight (kDa)

6.4

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	43 - 94	1.7e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	136 - 181	3.6e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	3 cut(s)	47, 133, 192
AclWI	GGATC	2 cut(s)	110, 802
AcoI	YGGCCR	2 cut(s)	516, 586
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	3 cut(s)	53, 356, 806
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	62, 929
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	4 cut(s)	349, 492, 772, 799
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	5 cut(s)	200, 533, 627, 750, 828
AluI	AGCT	5 cut(s)	200, 533, 627, 750, 828
Alw26I	GTCTC	2 cut(s)	4, 134
AlwI	GGATC	2 cut(s)	110, 802
Aor13HI	TCCGGA	1 cut(s)	691
AoxI	GGCC	3 cut(s)	210, 516, 586
ApeKI	GCWGC	2 cut(s)	19, 750
ApoI	RAATTY	1 cut(s)	373
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	74, 872, 883
AvaII	GGWCC	1 cut(s)	689
BalI	TGGCCA	2 cut(s)	518, 588
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	31, 737
BccI	CCATC	4 cut(s)	47, 427, 578, 726
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	351, 494, 774, 801
BciVI	GTATCC	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	4, 134
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	4 cut(s)	284, 341, 711, 893
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	20, 192, 751
BlsI	GCNGC	3 cut(s)	21, 193, 752
Bme1390I	CCNGG	4 cut(s)	351, 494, 774, 801
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	4 cut(s)	351, 494, 774, 801
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	5 cut(s)	6, 316, 487, 531, 854
BmuI	ACTGGG	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	783, 795
BpuEI	CTTGAG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	207, 321, 349, 867
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 356, 806
Bse1I	ACTGG	2 cut(s)	361, 899
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	4 cut(s)	351, 494, 774, 801
BseDI	CCNNGG	4 cut(s)	207, 321, 349, 867
BseGI	GGATG	4 cut(s)	316, 331, 502, 718
BseLI	CCNNNNNNNGG	3 cut(s)	53, 356, 806
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	361, 899
BseRI	GAGGAG	8 cut(s)	15, 18, 21, 24, 27, 30, 33, 619
BseXI	GCAGC	2 cut(s)	31, 737
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	212, 518, 588
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	692
BslI	CCNNNNNNNGG	3 cut(s)	53, 356, 806
BsmAI	GTCTC	2 cut(s)	4, 134
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	212, 518, 588
Bsp13I	TCCGGA	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	115, 550, 794
BspACI	CCGC	3 cut(s)	47, 133, 192
BspANI	GGCC	3 cut(s)	212, 518, 588
BspCNI	CTCAG	1 cut(s)	463
BspEI	TCCGGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	110, 802
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	361, 899
BssECI	CCNNGG	4 cut(s)	207, 321, 349, 867
BssMI	GATC	3 cut(s)	115, 550, 794
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	3 cut(s)	207, 321, 867
Bst2UI	CCWGG	4 cut(s)	351, 494, 774, 801
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	294, 546
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	316, 331, 502, 718
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	118, 553, 797
BstMAI	GTCTC	2 cut(s)	4, 134
BstMBI	GATC	3 cut(s)	115, 550, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 289, 376
BstNI	CCWGG	4 cut(s)	351, 494, 774, 801
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	4 cut(s)	349, 492, 772, 799
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	31, 737
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	212, 518, 588
BtsCI	GGATG	4 cut(s)	316, 331, 502, 718
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	2 cut(s)	294, 546
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	6 cut(s)	455, 520, 599, 686, 764, 911
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	1 cut(s)	471
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	3 cut(s)	117, 552, 796
DpnII	GATC	3 cut(s)	115, 550, 794
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	2 cut(s)	516, 586
Eco130I	CCWWGG	3 cut(s)	207, 321, 867
Eco47I	GGWCC	1 cut(s)	689
EcoRII	CCWGG	4 cut(s)	349, 492, 772, 799
EcoT14I	CCWWGG	3 cut(s)	207, 321, 867
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	3 cut(s)	207, 321, 867
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	6 cut(s)	458, 523, 602, 689, 767, 914
FatI	CATG	6 cut(s)	454, 519, 598, 685, 763, 910
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	20, 192, 751
FokI	GGATG	4 cut(s)	323, 338, 509, 705
Fsp4HI	GCNGC	3 cut(s)	20, 192, 751
FspBI	CTAG	4 cut(s)	284, 341, 711, 893
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	20, 192, 751
GsuI	CTGGAG	2 cut(s)	783, 795
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	212, 518, 588
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	458, 523, 602, 689, 767, 914
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	262, 487, 616, 769, 833
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	3 cut(s)	74, 872, 883
Hpy166II	GTNNAC	2 cut(s)	166, 449
Hpy188I	TCNGA	3 cut(s)	9, 115, 388
Hpy188III	TCNNGA	4 cut(s)	106, 152, 341, 692
Hpy8I	GTNNAC	2 cut(s)	166, 449
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	158, 347, 785
HpyCH4V	TGCA	8 cut(s)	19, 70, 430, 442, 460, 484, 500, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 289, 376
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	458, 523, 602, 689, 767, 914
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
Kpn2I	TCCGGA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	115, 550, 794
LmnI	GCTCC	2 cut(s)	632, 743
Lsp1109I	GCAGC	2 cut(s)	31, 737
LweI	GCATC	5 cut(s)	6, 316, 487, 531, 854
MaeI	CTAG	4 cut(s)	284, 341, 711, 893
MaeIII	GTNAC	2 cut(s)	74, 172
MalI	GATC	3 cut(s)	117, 552, 796
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	3 cut(s)	115, 550, 794
MboII	GAAGA	5 cut(s)	74, 357, 519, 707, 710
MflI	RGATCY	1 cut(s)	794
MlsI	TGGCCA	2 cut(s)	518, 588
MluCI	AATT	6 cut(s)	57, 361, 373, 554, 852, 915
MluNI	TGGCCA	2 cut(s)	518, 588
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	271, 778, 842
Mox20I	TGGCCA	2 cut(s)	518, 588
MroI	TCCGGA	1 cut(s)	691
MscI	TGGCCA	2 cut(s)	518, 588
MseI	TTAA	2 cut(s)	257, 888
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	2 cut(s)	518, 588
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	351, 494, 774, 801
MvaI	CCWGG	4 cut(s)	351, 494, 774, 801
MwoI	GCNNNNNNNGC	3 cut(s)	197, 289, 376
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	3 cut(s)	115, 550, 794
NlaIII	CATG	6 cut(s)	458, 523, 602, 689, 767, 914
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	74, 172
NspI	RCATGY	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	671
PciI	ACATGT	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	487, 616
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	772
PkrI	GCNGC	3 cut(s)	21, 193, 752
PleI	GAGTC	3 cut(s)	270, 777, 841
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	3 cut(s)	270, 777, 841
PscI	ACATGT	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	888
Psp6I	CCWGG	4 cut(s)	349, 492, 772, 799
PspGI	CCWGG	4 cut(s)	349, 492, 772, 799
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	671
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	257, 888
SatI	GCNGC	3 cut(s)	20, 192, 751
Sau3AI	GATC	3 cut(s)	115, 550, 794
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	3 cut(s)	271, 778, 842
ScrFI	CCNGG	4 cut(s)	351, 494, 774, 801
SfaNI	GCATC	5 cut(s)	6, 316, 487, 531, 854
SfcI	CTRYAG	1 cut(s)	269
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	6 cut(s)	57, 361, 373, 554, 852, 915
SsiI	CCGC	3 cut(s)	47, 133, 192
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	4 cut(s)	284, 341, 711, 893
StyD4I	CCNGG	4 cut(s)	349, 492, 772, 799
StyI	CCWWGG	3 cut(s)	207, 321, 867
TaqI	TCGA	3 cut(s)	51, 165, 636
TasI	AATT	6 cut(s)	57, 361, 373, 554, 852, 915
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	487, 616
Tru1I	TTAA	2 cut(s)	257, 888
Tru9I	TTAA	2 cut(s)	257, 888
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	2 cut(s)	74, 172
TseI	GCWGC	2 cut(s)	19, 750
Tsp45I	GTSAC	2 cut(s)	74, 172
TspDTI	ATGAA	6 cut(s)	242, 242, 321, 407, 420, 674
TspRI	CASTG	1 cut(s)	748
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	689
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	1 cut(s)	373
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	4 cut(s)	284, 341, 711, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.