Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8141848.1

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 225

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8141848.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

agtgtccatccccaaagggctgattgctccactgaaagctgcctcacatcacatgagagtcctggaggactaactttggaaggatctccaggtggtgggaaaaaaagaatgttgagcttggagtcggcaactgcatctctaatttggggtgaagccaaggtgagaacccaagagattaatctagccccagttgagcctcatggaattacaaggtatggcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

74

Amino Acids

7.8

Weight (kDa)

6.24

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AclWI	GGATC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	61, 88
AluBI	AGCT	2 cut(s)	39, 117
AluI	AGCT	2 cut(s)	39, 117
AlwI	GGATC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	39
AseI	ATTAAT	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	161, 172
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	63, 90
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	2 cut(s)	63, 90
BmrFI	CCNGG	2 cut(s)	63, 90
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	2 cut(s)	72, 84
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	63, 90
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	63, 90
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	63, 90
BstSCI	CCNGG	2 cut(s)	61, 88
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	30
CviAII	CATG	2 cut(s)	53, 200
CviJI	RGCY	6 cut(s)	20, 39, 117, 155, 185, 196
CviKI_1	RGCY	6 cut(s)	20, 39, 117, 155, 185, 196
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	61, 88
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	56, 203
FaiI	YATR	5 cut(s)	54, 201, 216, 221, 223
FatI	CATG	2 cut(s)	52, 199
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	72, 84
Hin1II	CATG	2 cut(s)	56, 203
HinfI	GANTC	2 cut(s)	58, 122
HphI	GGTGA	2 cut(s)	161, 172
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	56, 203
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	5 cut(s)	48, 75, 75, 102, 201
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	182
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	2 cut(s)	141, 204
MlyI	GAGTC	2 cut(s)	67, 131
MnlI	CCTC	3 cut(s)	53, 59, 207
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	63, 90
MvaI	CCWGG	2 cut(s)	63, 90
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	56, 203
PflMI	CCANNNNNTGG	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	66, 130
PpsI	GAGTC	2 cut(s)	66, 130
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	61, 88
PspGI	CCWGG	2 cut(s)	61, 88
PsuI	RGATCY	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	67, 131
ScrFI	CCNGG	2 cut(s)	63, 90
SetI	ASST	5 cut(s)	41, 94, 119, 162, 215
SfaNI	GCATC	1 cut(s)	143
Sse9I	AATT	2 cut(s)	141, 204
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	61, 88
StyI	CCWWGG	1 cut(s)	156
TasI	AATT	2 cut(s)	141, 204
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	39
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	177
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.