Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

41697371 .. 41700293

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1342000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTTCCGGGACTGATGCACGAAGGAGGAGGCATGGTTGGTGGGGAAGATATGCAAATGCAAGGTCACAGTCACAGGGGAGGTGGAGATCCTTGCCTCGTTTTAACTTCCGATCCCAAACCCCGTCTTCGTTGGACGGCTGACCTTCACGAACGATTTGTCGATGCCGTCACTCAGCTCGGCGGTTCCTCCAAAGCTACGCCAAAGGCTATTATGCGGACAATGAATGTCAAGGGCCTCACACTTTTTCATTTGAAGAGTCACCTGCAGAAATACAGACTAGGTAAGCAATCAGGGAAGGATATGACCGATATATCCAAGGATGCTTCCTACCTTCTAGAAAGCCCTGGTACCGGCAATTCTTCACCAAATTTGCCAACTTCTGATTTGAATGAGGGTTATGAAGTTAAGGAGGCATTGCGAGCACAGATGGAAGTGCAAAGTAAATTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAACGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCTGATCAATTCATTGGAGGTTCAGTTACTGATACAGACAGCCATAAATGTCATGGGTTGGGGAATAAGAATCCAAAAGGTTCCTCCATTGACATGCTTGGCTTCTACACATTGCAATCCACAGATGTAGTTGGGGTTCATGGTCCAGATGAAGAGCTGCCAATTAGTATCCATACCCAGAGAGCTGATTGCTCCACTGAAAGCTGCCTCACGTCACATGAGAGCCCTGGAGGACTGACCTTGGAAGGATCTCCAGGTGGCGGGAAAAAGAGAATGTTGAGCCTGGACACCGGCAATGGATCTCTAGTTTGGGGCGAAGCCAAGGTGAGAACCCAAGAGATTAATATAGCCCCAATTGAACCTCCTCGTGGGATTGCTAGGTATGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

33.78

Weight (kDa)

6.5

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	42 - 93	7.5e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	135 - 180	4.2e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	273
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	3 cut(s)	183, 217, 804
AclWI	GGATC	4 cut(s)	83, 107, 799, 850
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	353, 803, 911
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	256, 391, 902
AjiI	CACGTC	1 cut(s)	756
AjnI	CCWGG	5 cut(s)	346, 489, 769, 796, 825
AluBI	AGCT	6 cut(s)	178, 197, 530, 700, 728, 747
AluI	AGCT	6 cut(s)	178, 197, 530, 700, 728, 747
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	83, 107, 799, 850
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	235, 513
ApeKI	GCWGC	2 cut(s)	700, 747
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	4 cut(s)	49, 81, 144, 176
AseI	ATTAAT	1 cut(s)	885
Asp718I	GGTACC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	235, 686
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	254, 357, 880
AvaII	GGWCC	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	687, 734
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	2 cut(s)	152, 153
BciT130I	CCWGG	5 cut(s)	348, 491, 771, 798, 827
BciVI	GTATCC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	9
BfaI	CTAG	4 cut(s)	281, 338, 848, 921
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	722
BisI	GCNGC	2 cut(s)	701, 748
BlsI	GCNGC	2 cut(s)	702, 749
Bme1390I	CCNGG	6 cut(s)	9, 348, 491, 771, 798, 827
Bme18I	GGWCC	1 cut(s)	686
BmgBI	CACGTC	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	235, 686
BmiI	GGNNCC	3 cut(s)	187, 352, 625
BmrFI	CCNGG	6 cut(s)	9, 348, 491, 771, 798, 827
BmsI	GCATC	5 cut(s)	6, 154, 313, 484, 528
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	780, 792
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	5 cut(s)	318, 346, 769, 783, 864
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 803, 911
Bse118I	RCCGGY	2 cut(s)	353, 833
Bse3DI	GCAATG	3 cut(s)	416, 653, 844
BseBI	CCWGG	5 cut(s)	348, 491, 771, 798, 827
BseDI	CCNNGG	5 cut(s)	318, 346, 769, 783, 864
BseGI	GGATG	2 cut(s)	328, 499
BseLI	CCNNNNNNNGG	3 cut(s)	353, 803, 911
BseMI	GCAATG	3 cut(s)	416, 653, 844
BseMII	CTCAG	2 cut(s)	188, 459
BseRI	GAGGAG	2 cut(s)	42, 897
BseXI	GCAGC	2 cut(s)	687, 734
BshFI	GGCC	2 cut(s)	237, 515
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	8, 354, 834
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	353, 803, 911
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	237, 515
Bsp1286I	GDGCHC	2 cut(s)	427, 770
Bsp143I	GATC	5 cut(s)	88, 112, 547, 791, 842
BspACI	CCGC	3 cut(s)	183, 217, 804
BspANI	GGCC	2 cut(s)	237, 515
BspCNI	CTCAG	2 cut(s)	187, 460
BspLI	GGNNCC	3 cut(s)	187, 352, 625
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	4 cut(s)	83, 107, 799, 850
BspQI	GCTCTTC	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	3 cut(s)	416, 653, 844
BsrFI	RCCGGY	2 cut(s)	353, 833
BssAI	RCCGGY	2 cut(s)	353, 833
BssECI	CCNNGG	5 cut(s)	318, 346, 769, 783, 864
BssMI	GATC	5 cut(s)	88, 112, 547, 791, 842
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	3 cut(s)	318, 783, 864
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	5 cut(s)	348, 491, 771, 798, 827
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	2 cut(s)	251, 690
BstC8I	GCNNGC	2 cut(s)	423, 543
BstDEI	CTNAG	2 cut(s)	174, 468
BstF5I	GGATG	2 cut(s)	328, 499
BstKTI	GATC	5 cut(s)	91, 115, 550, 794, 845
BstMBI	GATC	5 cut(s)	88, 112, 547, 791, 842
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	5 cut(s)	348, 491, 771, 798, 827
BstNSI	RCATGY	2 cut(s)	455, 640
BstSCI	CCNGG	6 cut(s)	7, 346, 489, 769, 796, 825
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	687, 734
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	3 cut(s)	88, 791, 842
BstYI	RGATCY	3 cut(s)	88, 791, 842
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	237, 515
BtrI	CACGTC	1 cut(s)	756
BtsCI	GGATG	2 cut(s)	328, 499
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	423, 543
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr10I	RCCGGY	2 cut(s)	353, 833
Cfr13I	GGNCC	2 cut(s)	235, 686
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	7 cut(s)	34, 452, 517, 596, 637, 683, 761
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	174, 468
DpnI	GATC	5 cut(s)	90, 114, 549, 793, 844
DpnII	GATC	5 cut(s)	88, 112, 547, 791, 842
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	2 cut(s)	251, 690
EarI	CTCTTC	2 cut(s)	251, 690
Eco130I	CCWWGG	3 cut(s)	318, 783, 864
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	5 cut(s)	346, 489, 769, 796, 825
EcoT14I	CCWWGG	3 cut(s)	318, 783, 864
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	3 cut(s)	318, 783, 864
FaeI	CATG	7 cut(s)	37, 455, 520, 599, 640, 686, 764
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	7 cut(s)	33, 451, 516, 595, 636, 682, 760
FauI	CCCGC	1 cut(s)	797
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	701, 748
FokI	GGATG	2 cut(s)	335, 506
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	2 cut(s)	701, 748
FspBI	CTAG	4 cut(s)	281, 338, 848, 921
GluI	GCNGC	2 cut(s)	701, 748
GsuI	CTGGAG	2 cut(s)	780, 792
HaeIII	GGCC	2 cut(s)	237, 515
HapII	CCGG	3 cut(s)	8, 354, 834
Hin1II	CATG	7 cut(s)	37, 455, 520, 599, 640, 686, 764
HinfI	GANTC	3 cut(s)	259, 484, 613
HpaII	CCGG	3 cut(s)	8, 354, 834
HphI	GGTGA	3 cut(s)	254, 357, 880
Hpy188I	TCNGA	2 cut(s)	112, 385
Hpy188III	TCNNGA	3 cut(s)	149, 338, 689
HpyAV	CCTTC	5 cut(s)	17, 155, 292, 344, 782
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	9 cut(s)	19, 55, 61, 268, 439, 457, 481, 497, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	174, 468
HpySE526I	ACGT	1 cut(s)	755
Hsp92II	CATG	7 cut(s)	37, 455, 520, 599, 640, 686, 764
KpnI	GGTACC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	88, 112, 547, 791, 842
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	2 cut(s)	687, 734
LweI	GCATC	5 cut(s)	6, 154, 313, 484, 528
MaeI	CTAG	4 cut(s)	281, 338, 848, 921
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	6 cut(s)	65, 71, 169, 260, 568, 756
MalI	GATC	5 cut(s)	90, 114, 549, 793, 844
MboI	GATC	5 cut(s)	88, 112, 547, 791, 842
MboII	GAAGA	6 cut(s)	59, 119, 268, 354, 516, 707
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	3 cut(s)	88, 791, 842
MhlI	GDGCHC	2 cut(s)	427, 770
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	6 cut(s)	358, 370, 446, 551, 705, 897
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	3 cut(s)	104, 408, 885
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	515
MspI	CCGG	3 cut(s)	8, 354, 834
MspR9I	CCNGG	6 cut(s)	9, 348, 491, 771, 798, 827
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	5 cut(s)	348, 491, 771, 798, 827
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	5 cut(s)	88, 112, 547, 791, 842
NlaIII	CATG	7 cut(s)	37, 455, 520, 599, 640, 686, 764
NlaIV	GGNNCC	3 cut(s)	187, 352, 625
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	5 cut(s)	65, 71, 169, 260, 756
NspI	RCATGY	2 cut(s)	455, 640
PaqCI	CACCTGC	1 cut(s)	273
PciI	ACATGT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	484, 613
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	702, 749
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PscI	ACATGT	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	885
Psp6I	CCWGG	5 cut(s)	346, 489, 769, 796, 825
PspGI	CCWGG	5 cut(s)	346, 489, 769, 796, 825
PspN4I	GGNNCC	3 cut(s)	187, 352, 625
PspPI	GGNCC	2 cut(s)	235, 686
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	3 cut(s)	88, 791, 842
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	104, 408, 885
SatI	GCNGC	2 cut(s)	701, 748
Sau3AI	GATC	5 cut(s)	88, 112, 547, 791, 842
Sau96I	GGNCC	2 cut(s)	235, 686
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	6 cut(s)	9, 348, 491, 771, 798, 827
SduI	GDGCHC	2 cut(s)	427, 770
SfaNI	GCATC	5 cut(s)	6, 154, 313, 484, 528
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	358, 370, 446, 551, 705, 897
SsiI	CCGC	3 cut(s)	183, 217, 804
SspMI	CTAG	4 cut(s)	281, 338, 848, 921
StyD4I	CCNGG	6 cut(s)	7, 346, 489, 769, 796, 825
StyI	CCWWGG	3 cut(s)	318, 783, 864
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	6 cut(s)	358, 370, 446, 551, 705, 897
TfiI	GAWTC	2 cut(s)	484, 613
Tru1I	TTAA	3 cut(s)	104, 408, 885
Tru9I	TTAA	3 cut(s)	104, 408, 885
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	5 cut(s)	65, 71, 169, 260, 756
TseI	GCWGC	2 cut(s)	700, 747
Tsp45I	GTSAC	5 cut(s)	65, 71, 169, 260, 756
TspDTI	ATGAA	6 cut(s)	239, 239, 417, 544, 671, 708
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	686
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	2 cut(s)	455, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	4 cut(s)	281, 338, 848, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.