Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

32219557 .. 32221458

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g33040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTCCGGTACTGATGCACGAAGGAGGAGGCATGGTTGGTGAGGAAGATATGCAAATGCAAGGTCACAGTCACAGAGGAGGAGGAGATCCTTGCCTTGTCTTAACTTCCGACCCCAAACCCCGTCTTCGTTGGACAGCTGACCTTCACGAACGATTTGTCGATGCCGTCACTCAGCTCGGCGGTTCCTCCAAAGCTACGCCAAAGGCCATTATGCGGACAATGAATGTCAAGGGCCTCACACTTTTTCATTTGAAGAGTCACCTGCAGAAATACAGACTAGGTAAGCAATCAGGCAAGGATATGGCCGACATATCCAAGGATGCTTCCTACCTTCTAGAAAGCCCTGCTACCGGCAATTCTTCACCAAATTTGCCAACTTCTGATTTGAATGAGGGTTATGAAGTTAAGGAGGCATTGCGAGCACAGATGGAAGTGCAAAGTAAATTACATGTGCAGGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGATCGATCAATTCATTGGAGGTTCAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.57

Weight (kDa)

8.51

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	273, 448
AciI	CCGC	2 cut(s)	183, 217
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	306, 513
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	216, 353
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	256, 391
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	4 cut(s)	140, 178, 197, 530
AluI	AGCT	4 cut(s)	140, 178, 197, 530
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	573
AoxI	GGCC	4 cut(s)	207, 235, 306, 513
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	4 cut(s)	49, 81, 144, 176
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	53, 254, 357
BalI	TGGCCA	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	427
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	491
BfaI	CTAG	2 cut(s)	281, 338
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	273, 448
Bme1390I	CCNGG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	5 cut(s)	6, 154, 313, 484, 528
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	3 cut(s)	21, 51, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 353
Bse118I	RCCGGY	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	491
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	328, 499
BseLI	CCNNNNNNNGG	2 cut(s)	216, 353
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	188, 459
BseRI	GAGGAG	4 cut(s)	42, 93, 96, 99
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	4 cut(s)	209, 237, 308, 515
BshVI	ATCGAT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	8, 354
BslI	CCNNNNNNNGG	2 cut(s)	216, 353
BsnI	GGCC	4 cut(s)	209, 237, 308, 515
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	88, 544, 548
BspACI	CCGC	2 cut(s)	183, 217
BspANI	GGCC	4 cut(s)	209, 237, 308, 515
BspCNI	CTCAG	2 cut(s)	187, 460
BspDI	ATCGAT	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	273, 448
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	88, 544, 548
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	174, 468
BstF5I	GGATG	2 cut(s)	328, 499
BstKTI	GATC	3 cut(s)	91, 547, 551
BstMBI	GATC	3 cut(s)	88, 544, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	4 cut(s)	209, 237, 308, 515
BsuTUI	ATCGAT	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	328, 499
BveI	ACCTGC	2 cut(s)	273, 448
Cac8I	GCNNGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	573
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	3 cut(s)	34, 452, 517
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	174, 468
DpnI	GATC	3 cut(s)	90, 546, 550
DpnII	GATC	3 cut(s)	88, 544, 548
EaeI	YGGCCR	2 cut(s)	306, 513
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	37, 455, 520
FatI	CATG	3 cut(s)	33, 451, 516
FokI	GGATG	2 cut(s)	335, 506
FspBI	CTAG	2 cut(s)	281, 338
HaeIII	GGCC	4 cut(s)	209, 237, 308, 515
HapII	CCGG	2 cut(s)	8, 354
Hin1II	CATG	3 cut(s)	37, 455, 520
HinfI	GANTC	2 cut(s)	259, 484
HpaII	CCGG	2 cut(s)	8, 354
HphI	GGTGA	3 cut(s)	53, 254, 357
Hpy188I	TCNGA	2 cut(s)	112, 385
Hpy188III	TCNNGA	2 cut(s)	149, 338
HpyAV	CCTTC	3 cut(s)	17, 155, 344
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	8 cut(s)	19, 55, 61, 268, 439, 457, 481, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	174, 468
Hsp92II	CATG	3 cut(s)	37, 455, 520
Kzo9I	GATC	3 cut(s)	88, 544, 548
LpnPI	CCDG	8 cut(s)	21, 278, 279, 360, 367, 443, 476, 503
LweI	GCATC	5 cut(s)	6, 154, 313, 484, 528
MaeI	CTAG	2 cut(s)	281, 338
MaeIII	GTNAC	5 cut(s)	65, 71, 169, 260, 569
MalI	GATC	3 cut(s)	90, 546, 550
MboI	GATC	3 cut(s)	88, 544, 548
MboII	GAAGA	5 cut(s)	59, 119, 268, 354, 516
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	4 cut(s)	358, 370, 446, 552
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	113, 135
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	2 cut(s)	104, 408
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	8, 354
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	3 cut(s)	88, 544, 548
NlaIII	CATG	3 cut(s)	37, 455, 520
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	4 cut(s)	65, 71, 169, 260
NspI	RCATGY	1 cut(s)	455
PaqCI	CACCTGC	1 cut(s)	273
PciI	ACATGT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	484
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	104, 408
Sau3AI	GATC	3 cut(s)	88, 544, 548
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	5 cut(s)	6, 154, 313, 484, 528
SfcI	CTRYAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	4 cut(s)	358, 370, 446, 552
SsiI	CCGC	2 cut(s)	183, 217
SspMI	CTAG	2 cut(s)	281, 338
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	162, 547
TasI	AATT	4 cut(s)	358, 370, 446, 552
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	104, 408
Tru9I	TTAA	2 cut(s)	104, 408
TseFI	GTSAC	4 cut(s)	65, 71, 169, 260
Tsp45I	GTSAC	4 cut(s)	65, 71, 169, 260
TspDTI	ATGAA	4 cut(s)	239, 239, 417, 545
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	2 cut(s)	281, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.