Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007490

Physical Location & Seq

Genomic Coordinates Forward (+)

47912110 .. 47915246

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1364200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTTCCGGTACTGATGCACGAAGGAGGAGGCATGGTTGGTGAGGAAGATATGCAAATGCAAGGTCACAGTCACAGAGGAGGAGGAGATCCTTGCCTCGTCTTAACTTCCGACCCCAAACCCCGTCTTCGTTGGACAGCTGACCTTCACGAACGATTTGTCGATGCCGTCACTCAGCTCGGCGGTTCCTCCAAAGCTACTCCAAAGGCCATTATGCGGACCATGAATGTCAAGGGCCTCACACTTTTTCATTTGAAGAGTCACCTGCAGAAATACAGACTAGGTAAGCAATCGGGCAAGGATATGGCCGACATATCCAAGGATGCTTCCTACCTTCTAGAAAGCCCTGCTACTGGCAATACTTCACCAAATTTGCCAACTTCTGATTTGAATGAGGGTTATGAAGTTAAGGAGGCATTGCGAGCACAGATGGAAGTGCAAAGTAAATTACATGTGCAGGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCTGATCAATTCATTGGAGGTTCAGTTACTGATACAGATGGCCATAAATGCCATGAATCGGGGAATAAGAACCTAAAAGGTACTTCCCTTGACAAGCTTGGCTTCTACTCGTCGCAATCCACAGATGCAGTTGGGGTTCATGGTATAGGTGAAGAGCTGCCAATTTGTATCCATACCCAGAGAGCTGATTGCTCCACTGAAAGCTGCCTCACGTCACATGAGAGTCCTGGAGGACTGACCTTGGAAGGATCTCCAGGTGGCGGAAAAAAAAGAATGTTGAGCTTGGACACCGGCAATGGATCTTTAATTTGGGGCGAAGCCAAGGTGAGAACCCAAGAGATTAGTGTAGCCCCAATTGATCCTCCTCATGGTATTGCTAGGTATGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

33.78

Weight (kDa)

6.39

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	42 - 93	7.5e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	135 - 180	4.2e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007490)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00080 FvH4_3g00080
malus_domestica	MD05G1364200.v1.1 MD10G1342000.v1.1
prunus_persica	Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1 Prupe.4G000800_v2.0.a1
pyrus_communis	pycom05g33040 pycom05g33050 pycom10g29140
rosa_chinensis	RchiOBHm_Chr5g0000111
rosa_laevigata	RLG00000030842
rosa_multiflora	Rmu_co8141848.1_g000001 Rmu_sc0027134.1_g000002 Rmu_ssc0000243.1_g000020
rosa_roxburghii	Rroxscaffold_1G00075990
rosa_rugosa	Rorug04G0381600 Rorug04G0381600 Rorug04G0381600
rosa_samantha	Rh5AG000700 Rh5BG001900 Rh5CG000800 Rh5DG000700
rosa_wichuraiana	Rw5G000100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	273, 448
AciI	CCGC	3 cut(s)	183, 217, 804
AclWI	GGATC	4 cut(s)	83, 799, 850, 896
AcoI	YGGCCR	3 cut(s)	306, 513, 583
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	12, 625
AfiI	CCNNNNNNNGG	5 cut(s)	216, 353, 601, 803, 911
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	256, 391
AjiI	CACGTC	1 cut(s)	756
AjnI	CCWGG	3 cut(s)	489, 769, 796
AluBI	AGCT	9 cut(s)	140, 178, 197, 530, 640, 700, 728, 747, 825
AluI	AGCT	9 cut(s)	140, 178, 197, 530, 640, 700, 728, 747, 825
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	4 cut(s)	83, 799, 850, 896
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	5 cut(s)	207, 235, 306, 513, 583
ApeKI	GCWGC	2 cut(s)	700, 747
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	4 cut(s)	49, 81, 144, 176
AspS9I	GGNCC	2 cut(s)	219, 235
AsuHPI	GGTGA	5 cut(s)	53, 254, 357, 704, 880
AvaII	GGWCC	1 cut(s)	219
BalI	TGGCCA	2 cut(s)	515, 585
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	687, 734
BccI	CCATC	2 cut(s)	424, 575
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	3 cut(s)	491, 771, 798
BciVI	GTATCC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	547
BfaI	CTAG	3 cut(s)	281, 338, 921
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	273, 448
BfuI	GTATCC	1 cut(s)	722
BisI	GCNGC	2 cut(s)	701, 748
BlsI	GCNGC	2 cut(s)	702, 749
Bme1390I	CCNGG	3 cut(s)	491, 771, 798
Bme18I	GGWCC	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	219, 235
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	491, 771, 798
BmsI	GCATC	6 cut(s)	6, 154, 313, 484, 528, 658
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	780, 792
BpuEI	CTTGAG	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	318, 783, 864
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 552, 582
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 353, 601, 803, 911
Bse118I	RCCGGY	1 cut(s)	833
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	416, 844
BseBI	CCWGG	3 cut(s)	491, 771, 798
BseDI	CCNNGG	3 cut(s)	318, 783, 864
BseGI	GGATG	2 cut(s)	328, 499
BseLI	CCNNNNNNNGG	5 cut(s)	216, 353, 601, 803, 911
BseMI	GCAATG	2 cut(s)	416, 844
BseMII	CTCAG	2 cut(s)	188, 459
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	5 cut(s)	42, 93, 96, 99, 897
BseXI	GCAGC	2 cut(s)	687, 734
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	5 cut(s)	209, 237, 308, 515, 585
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	8, 834
BslI	CCNNNNNNNGG	5 cut(s)	216, 353, 601, 803, 911
BsnI	GGCC	5 cut(s)	209, 237, 308, 515, 585
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	88, 547, 791, 842, 901
BspACI	CCGC	3 cut(s)	183, 217, 804
BspANI	GGCC	5 cut(s)	209, 237, 308, 515, 585
BspCNI	CTCAG	2 cut(s)	187, 460
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	273, 448
BspPI	GGATC	4 cut(s)	83, 799, 850, 896
BspQI	GCTCTTC	1 cut(s)	690
BsrDI	GCAATG	2 cut(s)	416, 844
BsrFI	RCCGGY	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	833
BssECI	CCNNGG	3 cut(s)	318, 783, 864
BssMI	GATC	5 cut(s)	88, 547, 791, 842, 901
BssT1I	CCWWGG	3 cut(s)	318, 783, 864
Bst2UI	CCWGG	3 cut(s)	491, 771, 798
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	2 cut(s)	251, 690
BstC8I	GCNNGC	2 cut(s)	423, 543
BstDEI	CTNAG	2 cut(s)	174, 468
BstF5I	GGATG	2 cut(s)	328, 499
BstKTI	GATC	5 cut(s)	91, 550, 794, 845, 904
BstMBI	GATC	5 cut(s)	88, 547, 791, 842, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 591
BstNI	CCWGG	3 cut(s)	491, 771, 798
BstNSI	RCATGY	2 cut(s)	455, 934
BstSCI	CCNGG	3 cut(s)	489, 769, 796
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	687, 734
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	3 cut(s)	88, 791, 842
BstYI	RGATCY	3 cut(s)	88, 791, 842
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	5 cut(s)	209, 237, 308, 515, 585
BtrI	CACGTC	1 cut(s)	756
BtsCI	GGATG	2 cut(s)	328, 499
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	2 cut(s)	273, 448
Cac8I	GCNNGC	2 cut(s)	423, 543
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr10I	RCCGGY	1 cut(s)	833
Cfr13I	GGNCC	2 cut(s)	219, 235
Csp6I	GTAC	2 cut(s)	11, 624
CviAII	CATG	9 cut(s)	34, 223, 452, 517, 596, 683, 761, 911, 931
CviQI	GTAC	2 cut(s)	11, 624
DdeI	CTNAG	2 cut(s)	174, 468
DpnI	GATC	5 cut(s)	90, 549, 793, 844, 903
DpnII	GATC	5 cut(s)	88, 547, 791, 842, 901
EaeI	YGGCCR	3 cut(s)	306, 513, 583
Eam1104I	CTCTTC	2 cut(s)	251, 690
EarI	CTCTTC	2 cut(s)	251, 690
EciI	GGCGGA	1 cut(s)	819
Eco130I	CCWWGG	3 cut(s)	318, 783, 864
Eco47I	GGWCC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	489, 769, 796
EcoT14I	CCWWGG	3 cut(s)	318, 783, 864
ErhI	CCWWGG	3 cut(s)	318, 783, 864
FaeI	CATG	9 cut(s)	37, 226, 455, 520, 599, 686, 764, 914, 934
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FatI	CATG	9 cut(s)	33, 222, 451, 516, 595, 682, 760, 910, 930
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	701, 748
FokI	GGATG	2 cut(s)	335, 506
Fsp4HI	GCNGC	2 cut(s)	701, 748
FspBI	CTAG	3 cut(s)	281, 338, 921
GluI	GCNGC	2 cut(s)	701, 748
GsuI	CTGGAG	2 cut(s)	780, 792
HaeIII	GGCC	5 cut(s)	209, 237, 308, 515, 585
HapII	CCGG	2 cut(s)	8, 834
Hin1II	CATG	9 cut(s)	37, 226, 455, 520, 599, 686, 764, 914, 934
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	259, 484, 599, 766
HpaII	CCGG	2 cut(s)	8, 834
HphI	GGTGA	5 cut(s)	53, 254, 357, 704, 880
Hpy188I	TCNGA	2 cut(s)	112, 385
Hpy188III	TCNNGA	2 cut(s)	149, 338
Hpy99I	CGWCG	1 cut(s)	658
HpyAV	CCTTC	4 cut(s)	17, 155, 344, 782
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	9 cut(s)	19, 55, 61, 268, 439, 457, 481, 497, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 591
HpyF3I	CTNAG	2 cut(s)	174, 468
HpySE526I	ACGT	1 cut(s)	755
Hsp92II	CATG	9 cut(s)	37, 226, 455, 520, 599, 686, 764, 914, 934
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	88, 547, 791, 842, 901
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	2 cut(s)	687, 734
LweI	GCATC	6 cut(s)	6, 154, 313, 484, 528, 658
MaeI	CTAG	3 cut(s)	281, 338, 921
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	6 cut(s)	65, 71, 169, 260, 568, 756
MalI	GATC	5 cut(s)	90, 549, 793, 844, 903
MboI	GATC	5 cut(s)	88, 547, 791, 842, 901
MboII	GAAGA	5 cut(s)	59, 119, 268, 516, 707
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	3 cut(s)	88, 791, 842
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	2 cut(s)	515, 585
MluCI	AATT	6 cut(s)	370, 446, 551, 705, 849, 897
MluNI	TGGCCA	2 cut(s)	515, 585
MlyI	GAGTC	2 cut(s)	268, 775
MmeI	TCCRAC	2 cut(s)	113, 135
Mox20I	TGGCCA	2 cut(s)	515, 585
MscI	TGGCCA	2 cut(s)	515, 585
MseI	TTAA	3 cut(s)	104, 408, 848
Msp20I	TGGCCA	2 cut(s)	515, 585
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	8, 834
MspR9I	CCNGG	3 cut(s)	491, 771, 798
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	3 cut(s)	491, 771, 798
MwoI	GCNNNNNNNGC	2 cut(s)	422, 591
NdeII	GATC	5 cut(s)	88, 547, 791, 842, 901
NlaIII	CATG	9 cut(s)	37, 226, 455, 520, 599, 686, 764, 914, 934
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	5 cut(s)	65, 71, 169, 260, 756
NspI	RCATGY	2 cut(s)	455, 934
PaqCI	CACCTGC	1 cut(s)	273
PciI	ACATGT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	484, 599
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	702, 749
PleI	GAGTC	2 cut(s)	267, 774
PpsI	GAGTC	2 cut(s)	267, 774
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	489, 769, 796
PspGI	CCWGG	3 cut(s)	489, 769, 796
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	219, 235
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	3 cut(s)	88, 791, 842
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	2 cut(s)	12, 625
RsaNI	GTAC	2 cut(s)	11, 624
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	104, 408, 848
SatI	GCNGC	2 cut(s)	701, 748
Sau3AI	GATC	5 cut(s)	88, 547, 791, 842, 901
Sau96I	GGNCC	2 cut(s)	219, 235
SchI	GAGTC	2 cut(s)	268, 775
ScrFI	CCNGG	3 cut(s)	491, 771, 798
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	6 cut(s)	6, 154, 313, 484, 528, 658
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	370, 446, 551, 705, 849, 897
SsiI	CCGC	3 cut(s)	183, 217, 804
SspMI	CTAG	3 cut(s)	281, 338, 921
StyD4I	CCNGG	3 cut(s)	489, 769, 796
StyI	CCWWGG	3 cut(s)	318, 783, 864
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	1 cut(s)	162
TasI	AATT	6 cut(s)	370, 446, 551, 705, 849, 897
TfiI	GAWTC	2 cut(s)	484, 599
Tru1I	TTAA	3 cut(s)	104, 408, 848
Tru9I	TTAA	3 cut(s)	104, 408, 848
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	5 cut(s)	65, 71, 169, 260, 756
TseI	GCWGC	2 cut(s)	700, 747
Tsp45I	GTSAC	5 cut(s)	65, 71, 169, 260, 756
TspDTI	ATGAA	6 cut(s)	239, 239, 417, 544, 612, 671
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	2 cut(s)	455, 934
XspI	CTAG	3 cut(s)	281, 338, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.