Rh5DG000700
MYB Family

MYB-CC type transfactor, LHEQLE motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007490
Physical Location & Seq
Reverse (-)
81708 .. 85133
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG000700.1

Sequence Viewer

Length: 720 bp
ATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAGAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGCCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCATGGCTTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCTGGAGTTCATGGTCCAGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGGTGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATCTAGCCCCAGTTGAGCCTCATGGAATTACAATGTATGGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

6.06

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 64 - 109 2.3e-16 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 590
AclWI GGATC 1 cut(s) 586
AcoI YGGCCR 2 cut(s) 300, 370
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 2 cut(s) 139, 225
AfiI CCNNNNNNNGG 2 cut(s) 140, 590
AflIII ACRYGT 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 4 cut(s) 133, 276, 556, 583
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 3 cut(s) 317, 534, 612
AluI AGCT 3 cut(s) 317, 534, 612
AlwI GGATC 1 cut(s) 586
AoxI GGCC 2 cut(s) 300, 370
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 1 cut(s) 157
AseI ATTAAT 1 cut(s) 672
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 656, 667
AvaII GGWCC 1 cut(s) 473
BalI TGGCCA 2 cut(s) 302, 372
BbvI GCAGC 1 cut(s) 521
BccI CCATC 2 cut(s) 362, 510
BciT130I CCWGG 4 cut(s) 135, 278, 558, 585
BciVI GTATCC 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 4 cut(s) 68, 125, 495, 677
BfmI CTRYAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 4 cut(s) 135, 278, 558, 585
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmrFI CCNGG 4 cut(s) 135, 278, 558, 585
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 4 cut(s) 100, 271, 315, 638
BmuI ACTGGG 1 cut(s) 677
BpmI CTGGAG 3 cut(s) 483, 567, 579
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 105, 133, 651
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 590
Bse1I ACTGG 2 cut(s) 145, 683
BseBI CCWGG 4 cut(s) 135, 278, 558, 585
BseDI CCNNGG 3 cut(s) 105, 133, 651
BseGI GGATG 4 cut(s) 100, 115, 286, 502
BseLI CCNNNNNNNGG 2 cut(s) 140, 590
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 2 cut(s) 145, 683
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 2 cut(s) 302, 372
BslI CCNNNNNNNGG 2 cut(s) 140, 590
BsnI GGCC 2 cut(s) 302, 372
Bsp143I GATC 2 cut(s) 334, 578
BspANI GGCC 2 cut(s) 302, 372
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 586
BsrI ACTGG 2 cut(s) 145, 683
BssECI CCNNGG 3 cut(s) 105, 133, 651
BssMI GATC 2 cut(s) 334, 578
BssT1I CCWWGG 2 cut(s) 105, 651
Bst2UI CCWGG 4 cut(s) 135, 278, 558, 585
BstC8I GCNNGC 2 cut(s) 78, 330
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 4 cut(s) 100, 115, 286, 502
BstKTI GATC 2 cut(s) 337, 581
BstMBI GATC 2 cut(s) 334, 578
BstMWI GCNNNNNNNGC 2 cut(s) 73, 160
BstNI CCWGG 4 cut(s) 135, 278, 558, 585
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 133, 276, 556, 583
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 1 cut(s) 578
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 302, 372
BtsCI GGATG 4 cut(s) 100, 115, 286, 502
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 2 cut(s) 78, 330
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 138, 224
CviAII CATG 6 cut(s) 239, 304, 383, 470, 548, 695
CviQI GTAC 2 cut(s) 138, 224
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 336, 580
DpnII GATC 2 cut(s) 334, 578
DraI TTTAAA 1 cut(s) 42
EaeI YGGCCR 2 cut(s) 300, 370
Eco130I CCWWGG 2 cut(s) 105, 651
Eco47I GGWCC 1 cut(s) 473
EcoRII CCWGG 4 cut(s) 133, 276, 556, 583
EcoT14I CCWWGG 2 cut(s) 105, 651
ErhI CCWWGG 2 cut(s) 105, 651
FaeI CATG 6 cut(s) 242, 307, 386, 473, 551, 698
FatI CATG 6 cut(s) 238, 303, 382, 469, 547, 694
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 4 cut(s) 107, 122, 293, 489
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 4 cut(s) 68, 125, 495, 677
GluI GCNGC 1 cut(s) 535
GsuI CTGGAG 3 cut(s) 483, 567, 579
HaeIII GGCC 2 cut(s) 302, 372
Hin1II CATG 6 cut(s) 242, 307, 386, 473, 551, 698
HinfI GANTC 5 cut(s) 46, 271, 400, 553, 617
HphI GGTGA 2 cut(s) 656, 667
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 125, 476
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 131, 569
HpyCH4V TGCA 5 cut(s) 214, 244, 268, 284, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 160
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 6 cut(s) 242, 307, 386, 473, 551, 698
Kzo9I GATC 2 cut(s) 334, 578
LmnI GCTCC 1 cut(s) 527
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 4 cut(s) 100, 271, 315, 638
MaeI CTAG 4 cut(s) 68, 125, 495, 677
MalI GATC 2 cut(s) 336, 580
MboI GATC 2 cut(s) 334, 578
MboII GAAGA 4 cut(s) 141, 303, 491, 494
MflI RGATCY 1 cut(s) 578
MlsI TGGCCA 2 cut(s) 302, 372
MluCI AATT 5 cut(s) 145, 157, 338, 636, 699
MluNI TGGCCA 2 cut(s) 302, 372
MlyI GAGTC 3 cut(s) 55, 562, 626
Mox20I TGGCCA 2 cut(s) 302, 372
MscI TGGCCA 2 cut(s) 302, 372
MseI TTAA 2 cut(s) 41, 672
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 2 cut(s) 302, 372
MspR9I CCNGG 4 cut(s) 135, 278, 558, 585
MvaI CCWGG 4 cut(s) 135, 278, 558, 585
MwoI GCNNNNNNNGC 2 cut(s) 73, 160
NdeII GATC 2 cut(s) 334, 578
NlaIII CATG 6 cut(s) 242, 307, 386, 473, 551, 698
NspI RCATGY 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 455
PciI ACATGT 1 cut(s) 238
PfeI GAWTC 2 cut(s) 271, 400
PflMI CCANNNNNTGG 1 cut(s) 590
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 1 cut(s) 536
PleI GAGTC 3 cut(s) 54, 561, 625
PpsI GAGTC 3 cut(s) 54, 561, 625
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 672
Psp6I CCWGG 4 cut(s) 133, 276, 556, 583
PspGI CCWGG 4 cut(s) 133, 276, 556, 583
PspPI GGNCC 1 cut(s) 473
PsuI RGATCY 1 cut(s) 578
RsaI GTAC 2 cut(s) 139, 225
RsaNI GTAC 2 cut(s) 138, 224
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 2 cut(s) 41, 672
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 2 cut(s) 334, 578
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 3 cut(s) 55, 562, 626
ScrFI CCNGG 4 cut(s) 135, 278, 558, 585
SetI ASST 9 cut(s) 73, 102, 123, 319, 352, 536, 589, 614, 657
SfaNI GCATC 4 cut(s) 100, 271, 315, 638
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 5 cut(s) 145, 157, 338, 636, 699
SspMI CTAG 4 cut(s) 68, 125, 495, 677
StyD4I CCNGG 4 cut(s) 133, 276, 556, 583
StyI CCWWGG 2 cut(s) 105, 651
TaqI TCGA 1 cut(s) 420
TasI AATT 5 cut(s) 145, 157, 338, 636, 699
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 2 cut(s) 271, 400
Tru1I TTAA 2 cut(s) 41, 672
Tru9I TTAA 2 cut(s) 41, 672
TscAI CASTG 1 cut(s) 532
TseI GCWGC 1 cut(s) 534
TspDTI ATGAA 6 cut(s) 26, 26, 105, 191, 204, 458
TspRI CASTG 1 cut(s) 532
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 473
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
XspI CTAG 4 cut(s) 68, 125, 495, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.