FvH4_3g04220

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002149
Physical Location & Seq
Reverse (-)
2361295 .. 2365490
4196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04220.t1

Sequence Viewer

Length: 1410 bp
ATGAACCAAAAGGCTAACGTTTCTAAAGAGCTTAATGCGAAGCACAGAAAGATACTGGAAGGTCTTCTTAAACTACCAGAGAACAAAGAATGTGCAGACTGCAAAGCCATAGCTCCACGATGGGCTAGCATCAATCTCGGAATTTTTATATGCATGCAGTGTTCCGGGGCCCATAGAAGTCTTGGGGTACACATATCAAAGGTGAGATCTGCCACTTTGGACACATGGCTCCCCGAGCAGATTGCATTTATCCAATCCATGGGAAATGAGAAATCAAACAGTTACTGGGAAGCAGAGTTGCCTCCTAATTATGACAGAGTTGGAATCGAGAATTTCATCCGTGCAAAGTATGAATTGAAAAAGTGGGTTCCCAGGGATGGCAAACTAAAATCAGCTCCCAAGGTGACTGAGCTGAATACTTCTTTTGATGGAGCGAGGCCTGAAATTAGAAGTGAGTATGGTGATGTTAAAGATATTGAACGTTCTTATGAGCAGAAAGGTGCTCATCCACCTGGTAGAATAAACAGCACACCTCAGCAGAAAAATATTGAGAAGAAATCCCAAGAAGCAAGTCAAGAACCACAAGAACTACTCAAGAAATCAGAACCAGTAGCTCCAAAAGCTGAACCAGCAAGTCAGGGAGCCGTTGCTGCTCCAATTTCCACACCAGTTAAAGTGGATTATGCTACTGATTTGTTCAATATGCTCTCCATGGAGGACTCAAGAGGAAGCGATTCCATGGCATCCGCCAATAACATTACATTGGCTAGTATCCATCCTACTGAATCTAAATTGGCAGAAGAGAAAAACAATGCACCAGAACCATCTGAAAGCAAGGTGCAATATAAATATGGTATTGAGGATTTGTTTATAGATTCACCATCAGTCACTCAAACCGTTTCAGTGAAACCTGAGACTGATGTCAAGACTGACATCATAAACTTATTTGAGAAGTCAAGCATGGTTTCTCCGTTCTCAATGCATCAACAACAACAACAACAACAACAAGCAATGCTCTCCCAACAACGGTCATTAGTAATGGCTACTGCAGCAAATTCTAGCGGATCCCAGGCCTTTCCAAGTTTACAACCTGCCTCCCAAGCTATTCACTTGCCCACACAAAATGGGCAAAGCATTGGCCAACAAGTTCCTGGCAAGATGACGCCTCCTAATATACAATATCATAGTCAGATTGGGAATGGCTATCATGCACGTCCAATAGGCAATGCAGTTTCTTACTCGCCGTCAAGCATGTATACGATGAGGCCAGTAGCTCCAATCAATGGTGTCAGAAGCATTGGCGCAAGCGGAGTTTCGACAGCACCACGGAAACCTTCTGTCACTCCAACTCCTTCAGGAAGGGACTTTGATTTTTCATCCTTAACTCAAGGATTGTTTACTAAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

470

Amino Acids

51.43

Weight (kDa)

8.88

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 17 - 123 8.4e-40 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1099
AccB7I CCANNNNNTGG 2 cut(s) 259, 1283
AccI GTMKAC 1 cut(s) 1256
AciI CCGC 3 cut(s) 747, 1062, 1308
AclI AACGTT 2 cut(s) 18, 481
AclWI GGATC 2 cut(s) 1059, 1072
AcoI YGGCCR 1 cut(s) 1138
AcsI RAATTY 3 cut(s) 141, 331, 1054
AcuI CTGAAG 1 cut(s) 1338
AcyI GRCGYC 1 cut(s) 1163
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 259, 377, 1026, 1283
AgsI TTSAA 3 cut(s) 358, 479, 700
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 4 cut(s) 371, 511, 1068, 1150
AluBI AGCT 8 cut(s) 31, 113, 395, 412, 614, 623, 1103, 1274
AluI AGCT 8 cut(s) 31, 113, 395, 412, 614, 623, 1103, 1274
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 2 cut(s) 1059, 1072
AlwNI CAGNNNCTG 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 5 cut(s) 168, 437, 1071, 1138, 1265
ApaI GGGCCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 650, 1049
ApoI RAATTY 3 cut(s) 141, 331, 1054
Asp700I GAANNNNTTC 2 cut(s) 63, 733
AspLEI GCGC 1 cut(s) 1304
AspS9I GGNCC 2 cut(s) 168, 169
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 4 cut(s) 214, 415, 473, 870
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 1140
BamHI GGATCC 1 cut(s) 1064
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 505
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 637, 1061
BccI CCATC 6 cut(s) 114, 371, 422, 783, 832, 889
BceAI ACGGC 2 cut(s) 629, 1228
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 224, 258
BciT130I CCWGG 4 cut(s) 373, 513, 1070, 1152
BciVI GTATCC 1 cut(s) 782
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 3 cut(s) 126, 768, 1059
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 1099
BfuI GTATCC 1 cut(s) 782
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 651, 1050
BlsI GCNGC 2 cut(s) 652, 1051
Bme1390I CCNGG 5 cut(s) 166, 373, 513, 1070, 1152
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 1214
BmgT120I GGNCC 2 cut(s) 168, 169
BmiI GGNNCC 6 cut(s) 169, 170, 230, 369, 643, 1066
BmrFI CCNGG 5 cut(s) 166, 373, 513, 1070, 1152
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 138, 752, 991
BmtI GCTAGC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 3 cut(s) 578, 706, 1371
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 1163
BsaJI CCNNGG 9 cut(s) 165, 258, 371, 372, 399, 711, 738, 1068, 1325
BsaXI ACNNNNNCTCC 2 cut(s) 1333, 1363
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 377, 1026, 1283
Bse1I ACTGG 5 cut(s) 60, 290, 608, 668, 1268
Bse3DI GCAATG 2 cut(s) 1017, 1231
BseBI CCWGG 4 cut(s) 373, 513, 1070, 1152
BseDI CCNNGG 9 cut(s) 165, 258, 371, 372, 399, 711, 738, 1068, 1325
BseGI GGATG 6 cut(s) 336, 382, 505, 743, 775, 1376
BseLI CCNNNNNNNGG 4 cut(s) 259, 377, 1026, 1283
BseMI GCAATG 2 cut(s) 1017, 1231
BseMII CTCAG 3 cut(s) 399, 548, 903
BseNI ACTGG 5 cut(s) 60, 290, 608, 668, 1268
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 2 cut(s) 637, 1061
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 5 cut(s) 170, 439, 1073, 1140, 1267
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 1376
BslI CCNNNNNNNGG 4 cut(s) 259, 377, 1026, 1283
BsmAI GTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 1376
BsnI GGCC 5 cut(s) 170, 439, 1073, 1140, 1267
BsoBI CYCGRG 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 172, 505
Bsp143I GATC 2 cut(s) 206, 1064
Bsp19I CCATGG 3 cut(s) 258, 711, 738
BspACI CCGC 3 cut(s) 747, 1062, 1308
BspANI GGCC 5 cut(s) 170, 439, 1073, 1140, 1267
BspCNI CTCAG 3 cut(s) 400, 547, 904
BspLI GGNNCC 6 cut(s) 169, 170, 230, 369, 643, 1066
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 1099
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 2 cut(s) 1059, 1072
BsrDI GCAATG 2 cut(s) 1017, 1231
BsrI ACTGG 5 cut(s) 60, 290, 608, 668, 1268
BssECI CCNNGG 9 cut(s) 165, 258, 371, 372, 399, 711, 738, 1068, 1325
BssMI GATC 2 cut(s) 206, 1064
BssNAI GTATAC 1 cut(s) 1257
BssNI GRCGYC 1 cut(s) 1163
BssT1I CCWWGG 4 cut(s) 258, 399, 711, 738
Bst1107I GTATAC 1 cut(s) 1257
Bst2UI CCWGG 4 cut(s) 373, 513, 1070, 1152
Bst4CI ACNGT 3 cut(s) 281, 898, 1029
Bst6I CTCTTC 1 cut(s) 795
BstACI GRCGYC 1 cut(s) 1163
BstC8I GCNNGC 3 cut(s) 127, 155, 1306
BstDEI CTNAG 3 cut(s) 408, 534, 912
BstDSI CCRYGG 4 cut(s) 258, 711, 738, 1325
BstF5I GGATG 6 cut(s) 336, 382, 505, 743, 775, 1376
BstHHI GCGC 1 cut(s) 1304
BstKTI GATC 2 cut(s) 209, 1067
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 2 cut(s) 206, 1064
BstMWI GCNNNNNNNGC 6 cut(s) 235, 620, 629, 650, 1049, 1100
BstNI CCWGG 4 cut(s) 373, 513, 1070, 1152
BstNSI RCATGY 2 cut(s) 157, 1255
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 5 cut(s) 164, 371, 511, 1068, 1150
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 637, 1061
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 2 cut(s) 206, 1064
BstYI RGATCY 2 cut(s) 206, 1064
BstZ17I GTATAC 1 cut(s) 1257
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 5 cut(s) 170, 439, 1073, 1140, 1267
BtgI CCRYGG 4 cut(s) 258, 711, 738, 1325
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 6 cut(s) 336, 382, 505, 743, 775, 1376
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 164, 909
BveI ACCTGC 1 cut(s) 1099
Cac8I GCNNGC 3 cut(s) 127, 155, 1306
CaiI CAGNNNCTG 1 cut(s) 285
CfoI GCGC 1 cut(s) 1304
Cfr13I GGNCC 2 cut(s) 168, 169
CseI GACGC 1 cut(s) 1171
CsiI ACCWGGT 1 cut(s) 511
Csp6I GTAC 1 cut(s) 188
CviAII CATG 8 cut(s) 154, 225, 259, 712, 739, 961, 1208, 1252
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 408, 534, 912
DpnI GATC 2 cut(s) 208, 1066
DpnII GATC 2 cut(s) 206, 1064
EaeI YGGCCR 1 cut(s) 1138
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
EciI GGCGGA 1 cut(s) 736
Eco130I CCWWGG 4 cut(s) 258, 399, 711, 738
Eco147I AGGCCT 2 cut(s) 439, 1073
Eco24I GRGCYC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 1338
Eco88I CYCGRG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 4 cut(s) 371, 511, 1068, 1150
EcoT14I CCWWGG 4 cut(s) 258, 399, 711, 738
EcoT22I ATGCAT 2 cut(s) 155, 984
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 4 cut(s) 258, 399, 711, 738
FaeI CATG 8 cut(s) 157, 228, 262, 715, 742, 964, 1211, 1255
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 1376
FatI CATG 8 cut(s) 153, 224, 258, 711, 738, 960, 1207, 1251
FblI GTMKAC 1 cut(s) 1256
Fnu4HI GCNGC 2 cut(s) 651, 1050
FokI GGATG 6 cut(s) 323, 389, 492, 730, 762, 1363
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 651, 1050
FspBI CTAG 3 cut(s) 126, 768, 1059
GlaI GCGC 1 cut(s) 1303
GluI GCNGC 2 cut(s) 651, 1050
HaeIII GGCC 5 cut(s) 170, 439, 1073, 1140, 1267
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 1171
HhaI GCGC 1 cut(s) 1304
Hin1I GRCGYC 1 cut(s) 1163
Hin1II CATG 8 cut(s) 157, 228, 262, 715, 742, 964, 1211, 1255
Hin6I GCGC 1 cut(s) 1302
HinP1I GCGC 1 cut(s) 1302
HinfI GANTC 5 cut(s) 324, 719, 734, 785, 875
HpaII CCGG 1 cut(s) 165
HphI GGTGA 4 cut(s) 214, 415, 473, 870
Hpy166II GTNNAC 4 cut(s) 190, 1085, 1257, 1398
Hpy188I TCNGA 5 cut(s) 140, 604, 829, 1191, 1292
Hpy188III TCNNGA 6 cut(s) 328, 575, 595, 723, 925, 1356
Hpy8I GTNNAC 4 cut(s) 190, 1085, 1257, 1398
HpyAV CCTTC 4 cut(s) 53, 1344, 1353, 1362
HpyCH4III ACNGT 3 cut(s) 281, 898, 1029
HpyCH4IV ACGT 3 cut(s) 18, 481, 1213
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 620, 629, 650, 1049, 1100
HpyF3I CTNAG 3 cut(s) 408, 534, 912
HpySE526I ACGT 3 cut(s) 18, 481, 1213
Hsp92I GRCGYC 1 cut(s) 1163
Hsp92II CATG 8 cut(s) 157, 228, 262, 715, 742, 964, 1211, 1255
HspAI GCGC 1 cut(s) 1302
Kzo9I GATC 2 cut(s) 206, 1064
LmnI GCTCC 8 cut(s) 118, 234, 400, 431, 619, 641, 658, 1279
Lsp1109I GCAGC 2 cut(s) 637, 1061
LweI GCATC 3 cut(s) 138, 752, 991
MabI ACCWGGT 1 cut(s) 511
MaeI CTAG 3 cut(s) 126, 768, 1059
MaeII ACGT 3 cut(s) 18, 481, 1213
MaeIII GTNAC 4 cut(s) 281, 403, 886, 1339
MalI GATC 2 cut(s) 208, 1066
MboI GATC 2 cut(s) 206, 1064
MboII GAAGA 3 cut(s) 56, 565, 812
MflI RGATCY 2 cut(s) 206, 1064
MhlI GDGCHC 2 cut(s) 172, 505
MlsI TGGCCA 1 cut(s) 1140
MluCI AATT 8 cut(s) 141, 307, 331, 353, 444, 657, 791, 1054
MluNI TGGCCA 1 cut(s) 1140
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 301, 1370
MnlI CCTC 9 cut(s) 312, 429, 543, 709, 719, 853, 1105, 1176, 1257
Mox20I TGGCCA 1 cut(s) 1140
Mph1103I ATGCAT 2 cut(s) 155, 984
MroXI GAANNNNTTC 2 cut(s) 63, 733
MscI TGGCCA 1 cut(s) 1140
MseI TTAA 5 cut(s) 33, 69, 468, 672, 1382
Msp20I TGGCCA 1 cut(s) 1140
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 5 cut(s) 166, 373, 513, 1070, 1152
MvaI CCWGG 4 cut(s) 373, 513, 1070, 1152
MwoI GCNNNNNNNGC 6 cut(s) 235, 620, 629, 650, 1049, 1100
NciI CCSGG 1 cut(s) 166
NcoI CCATGG 3 cut(s) 258, 711, 738
NdeII GATC 2 cut(s) 206, 1064
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 8 cut(s) 157, 228, 262, 715, 742, 964, 1211, 1255
NlaIV GGNNCC 6 cut(s) 169, 170, 230, 369, 643, 1066
NmuCI GTSAC 3 cut(s) 403, 886, 1339
NsiI ATGCAT 2 cut(s) 155, 984
NspI RCATGY 2 cut(s) 157, 1255
PaeI GCATGC 1 cut(s) 157
PasI CCCWGGG 1 cut(s) 372
PceI AGGCCT 2 cut(s) 439, 1073
PdmI GAANNNNTTC 2 cut(s) 63, 733
PfeI GAWTC 4 cut(s) 324, 734, 785, 875
PflMI CCANNNNNTGG 2 cut(s) 259, 1283
PkrI GCNGC 2 cut(s) 652, 1051
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PshAI GACNNNNGTC 1 cut(s) 920
Psp1406I AACGTT 2 cut(s) 18, 481
Psp6I CCWGG 4 cut(s) 371, 511, 1068, 1150
PspGI CCWGG 4 cut(s) 371, 511, 1068, 1150
PspN4I GGNNCC 6 cut(s) 169, 170, 230, 369, 643, 1066
PspOMI GGGCCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 168, 169
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 2 cut(s) 206, 1064
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 5 cut(s) 33, 69, 468, 672, 1382
SatI GCNGC 2 cut(s) 651, 1050
Sau3AI GATC 2 cut(s) 206, 1064
Sau96I GGNCC 2 cut(s) 168, 169
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 5 cut(s) 166, 373, 513, 1070, 1152
SduI GDGCHC 2 cut(s) 172, 505
SexAI ACCWGGT 1 cut(s) 511
SfaNI GCATC 3 cut(s) 138, 752, 991
SfcI CTRYAG 1 cut(s) 1047
SmlI CTYRAG 3 cut(s) 593, 721, 1386
SmoI CTYRAG 3 cut(s) 593, 721, 1386
SphI GCATGC 1 cut(s) 157
Sse9I AATT 8 cut(s) 141, 307, 331, 353, 444, 657, 791, 1054
SseBI AGGCCT 2 cut(s) 439, 1073
SsiI CCGC 3 cut(s) 747, 1062, 1308
SspI AATATT 1 cut(s) 547
SspMI CTAG 3 cut(s) 126, 768, 1059
StuI AGGCCT 2 cut(s) 439, 1073
StyD4I CCNGG 5 cut(s) 164, 371, 511, 1068, 1150
StyI CCWWGG 4 cut(s) 258, 399, 711, 738
TaaI ACNGT 3 cut(s) 281, 898, 1029
TaiI ACGT 3 cut(s) 21, 484, 1216
TaqI TCGA 2 cut(s) 327, 1316
TasI AATT 8 cut(s) 141, 307, 331, 353, 444, 657, 791, 1054
TfiI GAWTC 4 cut(s) 324, 734, 785, 875
Tru1I TTAA 5 cut(s) 33, 69, 468, 672, 1382
Tru9I TTAA 5 cut(s) 33, 69, 468, 672, 1382
TscAI CASTG 2 cut(s) 164, 909
TseFI GTSAC 3 cut(s) 403, 886, 1339
TseI GCWGC 2 cut(s) 650, 1049
Tsp45I GTSAC 3 cut(s) 403, 886, 1339
TspDTI ATGAA 4 cut(s) 17, 325, 366, 1365
TspGWI ACGGA 3 cut(s) 329, 960, 1342
TspRI CASTG 2 cut(s) 164, 909
Van91I CCANNNNNTGG 2 cut(s) 259, 1283
XapI RAATTY 3 cut(s) 141, 331, 1054
XceI RCATGY 2 cut(s) 157, 1255
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 1148
XmiI GTMKAC 1 cut(s) 1256
XmnI GAANNNNTTC 2 cut(s) 63, 733
XspI CTAG 3 cut(s) 126, 768, 1059
Zsp2I ATGCAT 2 cut(s) 155, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.