Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002149

Physical Location & Seq

Genomic Coordinates Forward (+)

38888565 .. 38889499

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1302000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCATCCCAACAACAGGCATTACTCGTGGCTTCTGCGGCAAAATCTAGTGGATCCCATACCATTCCTGCAAACGCACAACCTGGCTCCCATTCTATTCAGCACTTACCCGCCCGAAATGGGCAAAACATTGGTCGCCAAGTTCCTGGAAGCCTGATTGGAAACAGCTATTATACACTCCCGGTAGGGAATACAGTTCCTTTCCAAACATCAAGCATGTACAGGACGAGGCCAGTAACTCCAGTTAATGGTGTCACAAACATCAGAGCTAACAAATTTTCATCAACGTCACCAATATCTTCTATCTCTTCAACTAAGTCAGGAAGGGATTTTGATTTCTCATCGTTAACTCAAGGATTGTTTACCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

125

Amino Acids

13.11

Weight (kDa)

11.04

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220
malus_domestica	MD05G1324100.v1.1 MD10G1301800.v1.1 MD10G1301900.v1.1 MD10G1302000.v1.1
prunus_persica	Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1
pyrus_communis	pycom05g29840
rosa_chinensis	RchiOBHm_Chr5g0006621
rosa_laevigata	RLG00000031407
rosa_multiflora	Rmu_sc0001972.1_g000007
rosa_roxburghii	Rroxscaffold_1G00069390
rosa_rugosa	Rorug04G0423100 Rorug04G0423200 Rorug04G0423200
rosa_samantha	Rh5AG050600 Rh5BG049700 Rh5CG058200 Rh5DG049200
rosa_wichuraiana	Rw5G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	2 cut(s)	38, 111
AclWI	GGATC	2 cut(s)	48, 61
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	16, 120, 248
AgsI	TTSAA	1 cut(s)	312
AjnI	CCWGG	2 cut(s)	82, 145
AluBI	AGCT	2 cut(s)	168, 269
AluI	AGCT	2 cut(s)	168, 269
AlwI	GGATC	2 cut(s)	48, 61
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	84, 147
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	3 cut(s)	84, 147, 182
BmiI	GGNNCC	2 cut(s)	55, 88
BmrFI	CCNGG	3 cut(s)	84, 147, 182
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 120, 248
Bse1I	ACTGG	2 cut(s)	233, 242
BseBI	CCWGG	2 cut(s)	84, 147
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	3 cut(s)	16, 120, 248
BseNI	ACTGG	2 cut(s)	233, 242
BshFI	GGCC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	16, 120, 248
BsnI	GGCC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	38, 111
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	55, 88
BspPI	GGATC	2 cut(s)	48, 61
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	233, 242
BssMI	GATC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	84, 147
Bst4CI	ACNGT	2 cut(s)	196, 372
Bst6I	CTCTTC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	84, 147
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	82, 145, 180
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	6 cut(s)	32, 87, 153, 168, 232, 269
CviKI_1	RGCY	6 cut(s)	32, 87, 153, 168, 232, 269
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	82, 145
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	60, 174, 218
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HpaI	GTTAAC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	348, 363
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	2 cut(s)	348, 363
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	196, 372
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	235, 253, 288
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	291, 300
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	246, 347
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	84, 147, 182
MvaI	CCWGG	2 cut(s)	84, 147
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	55, 88
NmuCI	GTSAC	2 cut(s)	253, 288
NspI	RCATGY	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	82, 145
PspGI	CCWGG	2 cut(s)	82, 145
PspN4I	GGNNCC	2 cut(s)	55, 88
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	246, 347
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	84, 147, 182
SetI	ASST	4 cut(s)	85, 170, 271, 290
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	38, 111
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	82, 145, 180
TaaI	ACNGT	2 cut(s)	196, 372
TaiI	ACGT	1 cut(s)	290
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	246, 347
Tru9I	TTAA	2 cut(s)	246, 347
TseFI	GTSAC	2 cut(s)	253, 288
Tsp45I	GTSAC	2 cut(s)	253, 288
TspDTI	ATGAA	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.