Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002149

Physical Location & Seq

Genomic Coordinates Reverse (-)

4279240 .. 4283471

Gene Structure 4232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG058200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTTATTCCATGGGCTCTTTAGTCTGATGGAAATCGAGTTTAAAATTGTTGTGCAATTACTGAAGAGTTATTTTGGTTCCTTGTTGCTACTAGCGATGGGAAATGAGAAATCGAACAGTTACTGGGAAGCAGAGTTGCCTCCTAATTATGACAGAGTTGGAATCGAGAATTTCATCCGTGCAAAGTATGAATCGAAAAAATGGGTTCCCAGGGATGACAAACTAAAATCACCTCCCAGGGTGACTGCGCAGAAAACTTCTGTTTATGGAGCAAGGCCTGAAATTAGAAGCAAGCATGGCGATGTCAGAAATATTGAACAGTCTTATGAGCAGAAAGTTGCTCATCCACCTGGTAGGATAAACAGGATACCACAGCAGGTTAGTGATGATTTGAAACCGAAAAACATGGAAAAGAAATCACCAGAAGCTAGTCAAAAACCACAAGAACTTGAGCAGAAAACAGAACCAGTAGCTCCAAAACCTGAACCAGCAAGTCATAAAGCTAGTGCTACTCCAATTTCTGCACCAGTTAAAGTGGACTATGCTACTGATTTGTTCAATATGCTCTCCATGGAGGAATCAAGAGGAAGTGGCTCCGTGACATTTGCCAATAACATTACATTTGCTACTATGCATTCTGCTGAAACAAAACTGGCAGAAGAGAAAAACAATGCACCAAAATCATCTGAAAGCAAGGTGCAATCAAAATATGGTATTCAGGATTTGTTTATAGATTCTCCATCAACCACTCAAACCTTTTCAGTGAAACCTCAGACTGATGTCAAGAATGACATTATAAACTTATTTGAGAAGTCAAGTATAGTTTCTCCATTCTCGATGCATCAACAACAACAACAAGCAATGCTCTCCCAACAACATTCATTACTAATGGCTGCTGCGCCAAATTCTAGCGGATCCCATTCCTTTTCTTCAAGTTTACAACCTGCCTCCCAAGCTGTTCACTTGCCCACACAAAATGGGCGAAGCGTTGGCCAACAAGTTCCTGGCAACCCAACGCCACCTAATCTACAATATTATAGTCAGATTGGGAATGGTTATCATGCACGTCCAATAGGCAATGCAGTTTCATACTCGACATCAAGCATGTATACGATGAGGCCGGTAGCTCCAATCAACGGTGTCAGAAGCATCGGAGGAAGCAGAGTTTCAACACCACCGCCAAAATCTTCTGTCACTCCAACTCCTTCAGGAAGGGACTTTGATTTTTCATCGTTAACTCAAGGATTGTTTACTAAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

420

Amino Acids

46.32

Weight (kDa)

9.42

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220
malus_domestica	MD05G1324100.v1.1 MD10G1301800.v1.1 MD10G1301900.v1.1 MD10G1302000.v1.1
prunus_persica	Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1
pyrus_communis	pycom05g29840
rosa_chinensis	RchiOBHm_Chr5g0006621
rosa_laevigata	RLG00000031407
rosa_multiflora	Rmu_sc0001972.1_g000007
rosa_roxburghii	Rroxscaffold_1G00069390
rosa_rugosa	Rorug04G0423100 Rorug04G0423200 Rorug04G0423200
rosa_samantha	Rh5AG050600 Rh5BG049700 Rh5CG058200 Rh5DG049200
rosa_wichuraiana	Rw5G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
Acc16I	TGCGCA	1 cut(s)	249
Acc36I	ACCTGC	2 cut(s)	367, 952
AccI	GTMKAC	1 cut(s)	1109
AciI	CCGC	2 cut(s)	912, 1178
AclWI	GGATC	2 cut(s)	909, 922
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	2 cut(s)	169, 904
AcuI	CTGAAG	2 cut(s)	83, 1191
AfiI	CCNNNNNNNGG	1 cut(s)	1136
AgsI	TTSAA	5 cut(s)	317, 394, 559, 933, 1170
AjiI	CACGTC	1 cut(s)	1067
AjnI	CCWGG	4 cut(s)	209, 236, 349, 1003
AluBI	AGCT	5 cut(s)	428, 473, 503, 956, 1127
AluI	AGCT	5 cut(s)	428, 473, 503, 956, 1127
AlwI	GGATC	2 cut(s)	909, 922
AlwNI	CAGNNNCTG	1 cut(s)	123
AoxI	GGCC	3 cut(s)	275, 991, 1118
ApeKI	GCWGC	2 cut(s)	893, 896
ApoI	RAATTY	2 cut(s)	169, 904
AspLEI	GCGC	2 cut(s)	250, 901
AsuHPI	GGTGA	3 cut(s)	222, 253, 411
BalI	TGGCCA	1 cut(s)	993
BamHI	GGATCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	880, 883
BccI	CCATC	3 cut(s)	22, 91, 748
BciT130I	CCWGG	4 cut(s)	211, 238, 351, 1005
BciVI	GTATCC	1 cut(s)	360
BfaI	CTAG	4 cut(s)	92, 429, 504, 909
BfuAI	ACCTGC	2 cut(s)	367, 952
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	894, 897
BlsI	GCNGC	2 cut(s)	895, 898
Bme1390I	CCNGG	4 cut(s)	211, 238, 351, 1005
BmgBI	CACGTC	1 cut(s)	1067
BmiI	GGNNCC	4 cut(s)	79, 207, 595, 916
BmrFI	CCNGG	4 cut(s)	211, 238, 351, 1005
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	828, 850, 1158
BmuI	ACTGGG	1 cut(s)	133
BoxI	GACNNNNGTC	1 cut(s)	779
BpuEI	CTTGAG	2 cut(s)	470, 1224
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	6 cut(s)	10, 209, 210, 236, 237, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	1186, 1216
Bsc4I	CCNNNNNNNGG	1 cut(s)	1136
Bse118I	RCCGGY	1 cut(s)	1120
Bse1I	ACTGG	4 cut(s)	128, 467, 527, 657
Bse3DI	GCAATG	2 cut(s)	867, 1084
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	4 cut(s)	211, 238, 351, 1005
BseDI	CCNNGG	6 cut(s)	10, 209, 210, 236, 237, 570
BseGI	GGATG	3 cut(s)	174, 220, 343
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	1136
BseMI	GCAATG	2 cut(s)	867, 1084
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	4 cut(s)	128, 467, 527, 657
BseXI	GCAGC	2 cut(s)	880, 883
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	277, 993, 1120
BsiSI	CCGG	1 cut(s)	1121
BslFI	GGGAC	1 cut(s)	1229
BslI	CCNNNNNNNGG	1 cut(s)	1136
BsmFI	GGGAC	1 cut(s)	1229
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	277, 993, 1120
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	914
Bsp19I	CCATGG	2 cut(s)	10, 570
BspACI	CCGC	2 cut(s)	912, 1178
BspANI	GGCC	3 cut(s)	277, 993, 1120
BspCNI	CTCAG	1 cut(s)	784
BspLI	GGNNCC	4 cut(s)	79, 207, 595, 916
BspMI	ACCTGC	2 cut(s)	367, 952
BspPI	GGATC	2 cut(s)	909, 922
BsrDI	GCAATG	2 cut(s)	867, 1084
BsrFI	RCCGGY	1 cut(s)	1120
BsrI	ACTGG	4 cut(s)	128, 467, 527, 657
BssAI	RCCGGY	1 cut(s)	1120
BssECI	CCNNGG	6 cut(s)	10, 209, 210, 236, 237, 570
BssMI	GATC	1 cut(s)	914
BssNAI	GTATAC	1 cut(s)	1110
BssT1I	CCWWGG	2 cut(s)	10, 570
Bst1107I	GTATAC	1 cut(s)	1110
Bst2UI	CCWGG	4 cut(s)	211, 238, 351, 1005
Bst4CI	ACNGT	3 cut(s)	119, 321, 1139
Bst6I	CTCTTC	2 cut(s)	59, 654
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	10, 570
BstF5I	GGATG	3 cut(s)	174, 220, 343
BstHHI	GCGC	2 cut(s)	250, 901
BstKTI	GATC	1 cut(s)	917
BstMBI	GATC	1 cut(s)	914
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 953
BstNI	CCWGG	4 cut(s)	211, 238, 351, 1005
BstNSI	RCATGY	1 cut(s)	1108
BstPAI	GACNNNNGTC	1 cut(s)	779
BstSCI	CCNGG	4 cut(s)	209, 236, 349, 1003
BstV1I	GCAGC	2 cut(s)	880, 883
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BstZ17I	GTATAC	1 cut(s)	1110
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	277, 993, 1120
BtgI	CCRYGG	2 cut(s)	10, 570
BtgZI	GCGATG	2 cut(s)	110, 315
BtrI	CACGTC	1 cut(s)	1067
BtsCI	GGATG	3 cut(s)	174, 220, 343
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	2 cut(s)	367, 952
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	123
CfoI	GCGC	2 cut(s)	250, 901
Cfr10I	RCCGGY	1 cut(s)	1120
CsiI	ACCWGGT	1 cut(s)	349
CviAII	CATG	6 cut(s)	11, 296, 406, 571, 1061, 1105
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	1 cut(s)	916
DpnII	GATC	1 cut(s)	914
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	2 cut(s)	59, 654
EarI	CTCTTC	2 cut(s)	59, 654
Eco130I	CCWWGG	2 cut(s)	10, 570
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	83, 1191
EcoRII	CCWGG	4 cut(s)	209, 236, 349, 1003
EcoT14I	CCWWGG	2 cut(s)	10, 570
EcoT22I	ATGCAT	2 cut(s)	636, 843
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	10, 570
FaeI	CATG	6 cut(s)	14, 299, 409, 574, 1064, 1108
FaqI	GGGAC	1 cut(s)	1229
FatI	CATG	6 cut(s)	10, 295, 405, 570, 1060, 1104
FblI	GTMKAC	1 cut(s)	1109
Fnu4HI	GCNGC	2 cut(s)	894, 897
FokI	GGATG	3 cut(s)	161, 227, 330
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	894, 897
FspBI	CTAG	4 cut(s)	92, 429, 504, 909
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	2 cut(s)	249, 900
GluI	GCNGC	2 cut(s)	894, 897
HaeIII	GGCC	3 cut(s)	277, 993, 1120
HapII	CCGG	1 cut(s)	1121
HhaI	GCGC	2 cut(s)	250, 901
Hin1II	CATG	6 cut(s)	14, 299, 409, 574, 1064, 1108
Hin6I	GCGC	2 cut(s)	248, 899
HinP1I	GCGC	2 cut(s)	248, 899
HincII	GTYRAC	1 cut(s)	1236
HindII	GTYRAC	1 cut(s)	1236
HinfI	GANTC	4 cut(s)	162, 191, 578, 734
HpaI	GTTAAC	1 cut(s)	1236
HpaII	CCGG	1 cut(s)	1121
HphI	GGTGA	3 cut(s)	222, 253, 411
Hpy166II	GTNNAC	6 cut(s)	538, 938, 961, 1110, 1236, 1251
Hpy188I	TCNGA	7 cut(s)	27, 308, 688, 774, 1044, 1145, 1154
Hpy188III	TCNNGA	6 cut(s)	166, 582, 719, 784, 835, 1209
Hpy8I	GTNNAC	6 cut(s)	538, 938, 961, 1110, 1236, 1251
HpyAV	CCTTC	2 cut(s)	1206, 1215
HpyCH4III	ACNGT	3 cut(s)	119, 321, 1139
HpyCH4IV	ACGT	1 cut(s)	1066
HpyCH4V	TGCA	9 cut(s)	55, 182, 524, 634, 674, 700, 841, 1064, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 953
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	1 cut(s)	1066
Hsp92II	CATG	6 cut(s)	14, 299, 409, 574, 1064, 1108
HspAI	GCGC	2 cut(s)	248, 899
KspAI	GTTAAC	1 cut(s)	1236
Kzo9I	GATC	1 cut(s)	914
LmnI	GCTCC	4 cut(s)	269, 478, 599, 1132
Lsp1109I	GCAGC	2 cut(s)	880, 883
LweI	GCATC	3 cut(s)	828, 850, 1158
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	4 cut(s)	92, 429, 504, 909
MaeII	ACGT	1 cut(s)	1066
MaeIII	GTNAC	4 cut(s)	119, 241, 598, 1192
MalI	GATC	1 cut(s)	916
MboI	GATC	1 cut(s)	914
MboII	GAAGA	4 cut(s)	76, 671, 921, 1179
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	993
MluCI	AATT	7 cut(s)	45, 56, 145, 169, 282, 516, 904
MluNI	TGGCCA	1 cut(s)	993
MmeI	TCCRAC	2 cut(s)	139, 1223
MnlI	CCTC	8 cut(s)	150, 243, 568, 578, 780, 958, 1110, 1148
Mox20I	TGGCCA	1 cut(s)	993
Mph1103I	ATGCAT	2 cut(s)	636, 843
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	3 cut(s)	42, 531, 1235
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	993
MspI	CCGG	1 cut(s)	1121
MspR9I	CCNGG	4 cut(s)	211, 238, 351, 1005
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	4 cut(s)	211, 238, 351, 1005
MwoI	GCNNNNNNNGC	2 cut(s)	297, 953
NcoI	CCATGG	2 cut(s)	10, 570
NdeII	GATC	1 cut(s)	914
NlaIII	CATG	6 cut(s)	14, 299, 409, 574, 1064, 1108
NlaIV	GGNNCC	4 cut(s)	79, 207, 595, 916
NmuCI	GTSAC	3 cut(s)	241, 598, 1192
NsbI	TGCGCA	1 cut(s)	249
NsiI	ATGCAT	2 cut(s)	636, 843
NspI	RCATGY	1 cut(s)	1108
PasI	CCCWGGG	2 cut(s)	210, 237
PceI	AGGCCT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	4 cut(s)	162, 191, 578, 734
PkrI	GCNGC	2 cut(s)	895, 898
PshAI	GACNNNNGTC	1 cut(s)	779
PsiI	TTATAA	1 cut(s)	797
Psp6I	CCWGG	4 cut(s)	209, 236, 349, 1003
PspGI	CCWGG	4 cut(s)	209, 236, 349, 1003
PspN4I	GGNNCC	4 cut(s)	79, 207, 595, 916
PstNI	CAGNNNCTG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	914
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	42, 531, 1235
SatI	GCNGC	2 cut(s)	894, 897
Sau3AI	GATC	1 cut(s)	914
ScrFI	CCNGG	4 cut(s)	211, 238, 351, 1005
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	3 cut(s)	828, 850, 1158
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	449, 1239
SmoI	CTYRAG	2 cut(s)	449, 1239
Sse9I	AATT	7 cut(s)	45, 56, 145, 169, 282, 516, 904
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	912, 1178
SspI	AATATT	2 cut(s)	313, 1034
SspMI	CTAG	4 cut(s)	92, 429, 504, 909
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	4 cut(s)	209, 236, 349, 1003
StyI	CCWWGG	2 cut(s)	10, 570
TaaI	ACNGT	3 cut(s)	119, 321, 1139
TaiI	ACGT	1 cut(s)	1069
TaqI	TCGA	6 cut(s)	36, 113, 165, 194, 836, 1094
TasI	AATT	7 cut(s)	45, 56, 145, 169, 282, 516, 904
TfiI	GAWTC	4 cut(s)	162, 191, 578, 734
Tru1I	TTAA	3 cut(s)	42, 531, 1235
Tru9I	TTAA	3 cut(s)	42, 531, 1235
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	3 cut(s)	241, 598, 1192
TseI	GCWGC	2 cut(s)	893, 896
Tsp45I	GTSAC	3 cut(s)	241, 598, 1192
TspDTI	ATGAA	5 cut(s)	163, 204, 870, 1077, 1218
TspGWI	ACGGA	2 cut(s)	167, 586
TspRI	CASTG	1 cut(s)	768
XapI	RAATTY	2 cut(s)	169, 904
XceI	RCATGY	1 cut(s)	1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	1109
XspI	CTAG	4 cut(s)	92, 429, 504, 909
Zsp2I	ATGCAT	2 cut(s)	636, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.