RLG00000031407

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002149
Physical Location & Seq
Reverse (-)
4824876 .. 4828452
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031407

Sequence Viewer

Length: 1428 bp
ATGAACCAAAAGGATAACGTTTCTAAAGAGCTTAATGCTAGGCACAGAAAGATATTGGAAGGTCTTCTTAAACTACCAGAGAACAGAGAATGTGCAGACTGCAAAGCCATAGCTCCACGATGGGCTAGTGTCAATCTCGGAATCTTTATATGCATGCAGTGTTCTGGGGCCCATAGAAGTCTTGGGGTACACATATCAAAGGTGAGATCTGCCACTTTGGACACATGGCTTCCAGAGCAGATTGCATTTATCCAATCGATGGGAAATGAGAAATCGAACAGTTACTGGGAAGCAGAGTTGCCTCCTAATTATGACAGAGTTGGAATCGAGAATTTCATCCGTGCAAAGTATGAATCGAAAAAATGGGTTCCCAGGGATGGCAAACTAAAATCACCTCCCAGGGTGACTGCGCAGAAAACTTCTGTTTATGGAGCAAGGCCTGAAATTAGAAGCAAGCATGGCGATGTCAGAAATATTAAACAGTTTTATGAGCAGAAAGTTGCTCATCCACCTGGTAGAATAAACAGGATACCACAGCAGGTTAGTGATGATTTGAAACCGAAAAACATTGAAAAGAAATCACCAGAAGCTAGTCAAAAACCACAAGAACTTGAGCAGAAAACAGAACCAGTAGCTCCAAAACCTGAACCGGCAAGTCATAGAGCTAGTGCTACTCCAATTTCCGCACCAGTTAAAGTGGACTATGCTACTGATTTGTTCAATATGCTCTCCATGGAGGAATCTATAGGAAGTGACTCCGTGACACTTGCCAATAACATTACATTGGCTACCATGCATTCTGCTGAAACAAATCTGGCAGAAGAGAAAAACAATGCACCAAAATCATCTGGAAGCAAAGTGCAATCAAAATATGGTATTGAGGATTTGTTTATAGATTCTCCATCAATCACTCAAACCTTTTCGGTGAAACCTCAGACTGATGTCAAGAATGACATTATAAACTTATTTGAGAAGTCAAGTATAGTTTCTCCATTCTCGATGCATCAACAACAACAACAAGAAGCAATGCTCTCCCAACAACATTCATTACTAATGGCTGCTGCGCCAAATTCTAGCGGATCCCATTCCTTTTCTTCAAGTTTACAACCTGCCTCCCATCCTATTCACTTGCCCACACAAAATGGGCGAAGCATTGGCCAACAAGTTCCTGGCAACCCAACGCTGCCTAATCTACAATATTATAGTCAGATTGGGAATGGTTATCATGCACGTCCAATAGGCAATGCAGTTTCTTACTCAACATCAAGCAGGTATACGATGAGGCCGGTAGCTCCAATCAACGGTGTCAGAAGCATCGGAGGAAGCAGAGTTTCAACACCACCGCCAAAATCTTCTGTCACTCCAACTCCTTCAGGAAGGGACTTTGATTTTTCATCGTTAACTCAAGGATTGTTTACTAAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

476

Amino Acids

52.39

Weight (kDa)

9.45

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 17 - 123 3.8e-40 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
Acc16I TGCGCA 1 cut(s) 411
Acc36I ACCTGC 3 cut(s) 529, 1117, 1260
AccB7I CCANNNNNTGG 1 cut(s) 259
AccI GTMKAC 1 cut(s) 1274
AciI CCGC 3 cut(s) 684, 1077, 1343
AclI AACGTT 1 cut(s) 18
AclWI GGATC 2 cut(s) 1074, 1087
AcoI YGGCCR 1 cut(s) 1156
AcsI RAATTY 2 cut(s) 331, 1069
AcuI CTGAAG 1 cut(s) 1356
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 259, 377, 1301
AgsI TTSAA 5 cut(s) 556, 572, 721, 1098, 1335
AjiI CACGTC 1 cut(s) 1232
AjnI CCWGG 4 cut(s) 371, 398, 511, 1168
AluBI AGCT 6 cut(s) 31, 113, 590, 635, 665, 1292
AluI AGCT 6 cut(s) 31, 113, 590, 635, 665, 1292
AlwI GGATC 2 cut(s) 1074, 1087
AlwNI CAGNNNCTG 1 cut(s) 285
AoxI GGCC 4 cut(s) 168, 437, 1156, 1283
ApaI GGGCCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 1058, 1061, 1183
ApoI RAATTY 2 cut(s) 331, 1069
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 2 cut(s) 412, 1066
AspS9I GGNCC 2 cut(s) 168, 169
AsuHPI GGTGA 5 cut(s) 214, 384, 415, 573, 937
BaeGI GKGCMC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 1158
BamHI GGATCC 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 1045, 1048, 1170
BccI CCATC 5 cut(s) 114, 253, 371, 910, 1125
BciT130I CCWGG 4 cut(s) 373, 400, 513, 1170
BciVI GTATCC 1 cut(s) 522
BfaI CTAG 5 cut(s) 39, 126, 591, 666, 1074
BfmI CTRYAG 1 cut(s) 744
BfuAI ACCTGC 3 cut(s) 529, 1117, 1260
BfuI GTATCC 1 cut(s) 522
BglII AGATCT 1 cut(s) 206
BisI GCNGC 3 cut(s) 1059, 1062, 1184
BlsI GCNGC 3 cut(s) 1060, 1063, 1185
Bme1390I CCNGG 4 cut(s) 373, 400, 513, 1170
BmgBI CACGTC 1 cut(s) 1232
BmgT120I GGNCC 2 cut(s) 168, 169
BmiI GGNNCC 4 cut(s) 169, 170, 369, 1081
BmrFI CCNGG 4 cut(s) 373, 400, 513, 1170
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 990, 1012, 1323
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 632, 1389
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 371, 372, 398, 399, 732
BsaXI ACNNNNNCTCC 2 cut(s) 1351, 1381
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 377, 1301
Bse118I RCCGGY 2 cut(s) 649, 1285
Bse1I ACTGG 3 cut(s) 290, 629, 689
Bse3DI GCAATG 2 cut(s) 1032, 1249
BseBI CCWGG 4 cut(s) 373, 400, 513, 1170
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 5 cut(s) 371, 372, 398, 399, 732
BseGI GGATG 4 cut(s) 336, 382, 505, 1117
BseLI CCNNNNNNNGG 3 cut(s) 259, 377, 1301
BseMI GCAATG 2 cut(s) 1032, 1249
BseMII CTCAG 1 cut(s) 947
BseNI ACTGG 3 cut(s) 290, 629, 689
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 1045, 1048, 1170
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 4 cut(s) 170, 439, 1158, 1285
BshVI ATCGAT 1 cut(s) 257
BsiSI CCGG 2 cut(s) 650, 1286
BslFI GGGAC 1 cut(s) 1394
BslI CCNNNNNNNGG 3 cut(s) 259, 377, 1301
BsmFI GGGAC 1 cut(s) 1394
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 4 cut(s) 170, 439, 1158, 1285
Bsp120I GGGCCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 206, 1079
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 3 cut(s) 684, 1077, 1343
BspANI GGCC 4 cut(s) 170, 439, 1158, 1285
BspCNI CTCAG 1 cut(s) 946
BspDI ATCGAT 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 169, 170, 369, 1081
BspMI ACCTGC 3 cut(s) 529, 1117, 1260
BspPI GGATC 2 cut(s) 1074, 1087
BsrDI GCAATG 2 cut(s) 1032, 1249
BsrFI RCCGGY 2 cut(s) 649, 1285
BsrI ACTGG 3 cut(s) 290, 629, 689
BssAI RCCGGY 2 cut(s) 649, 1285
BssECI CCNNGG 5 cut(s) 371, 372, 398, 399, 732
BssMI GATC 2 cut(s) 206, 1079
BssNAI GTATAC 1 cut(s) 1275
BssT1I CCWWGG 1 cut(s) 732
Bst1107I GTATAC 1 cut(s) 1275
Bst2UI CCWGG 4 cut(s) 373, 400, 513, 1170
Bst4CI ACNGT 3 cut(s) 281, 483, 1304
Bst6I CTCTTC 1 cut(s) 816
BstC8I GCNNGC 2 cut(s) 155, 455
BstDEI CTNAG 1 cut(s) 933
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 4 cut(s) 336, 382, 505, 1117
BstHHI GCGC 2 cut(s) 412, 1066
BstKTI GATC 2 cut(s) 209, 1082
BstMBI GATC 2 cut(s) 206, 1079
BstMWI GCNNNNNNNGC 2 cut(s) 235, 459
BstNI CCWGG 4 cut(s) 373, 400, 513, 1170
BstNSI RCATGY 1 cut(s) 157
BstPAI GACNNNNGTC 1 cut(s) 941
BstSCI CCNGG 4 cut(s) 371, 398, 511, 1168
BstSFI CTRYAG 1 cut(s) 744
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 1045, 1048, 1170
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 2 cut(s) 206, 1079
BstYI RGATCY 2 cut(s) 206, 1079
BstZ17I GTATAC 1 cut(s) 1275
Bsu15I ATCGAT 1 cut(s) 257
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 4 cut(s) 170, 439, 1158, 1285
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 732
BtgZI GCGATG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 1232
BtsCI GGATG 4 cut(s) 336, 382, 505, 1117
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
BveI ACCTGC 3 cut(s) 529, 1117, 1260
Cac8I GCNNGC 2 cut(s) 155, 455
CaiI CAGNNNCTG 1 cut(s) 285
CfoI GCGC 2 cut(s) 412, 1066
Cfr10I RCCGGY 2 cut(s) 649, 1285
Cfr13I GGNCC 2 cut(s) 168, 169
ClaI ATCGAT 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 511
Csp6I GTAC 1 cut(s) 188
CviAII CATG 6 cut(s) 154, 225, 458, 733, 793, 1226
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 933
DpnI GATC 2 cut(s) 208, 1081
DpnII GATC 2 cut(s) 206, 1079
EaeI YGGCCR 1 cut(s) 1156
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Eco130I CCWWGG 1 cut(s) 732
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 1356
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 4 cut(s) 371, 398, 511, 1168
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 3 cut(s) 155, 798, 1005
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 6 cut(s) 157, 228, 461, 736, 796, 1229
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 1394
FatI CATG 6 cut(s) 153, 224, 457, 732, 792, 1225
FblI GTMKAC 1 cut(s) 1274
Fnu4HI GCNGC 3 cut(s) 1059, 1062, 1184
FokI GGATG 4 cut(s) 323, 389, 492, 1104
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 1059, 1062, 1184
FspBI CTAG 5 cut(s) 39, 126, 591, 666, 1074
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 2 cut(s) 411, 1065
GluI GCNGC 3 cut(s) 1059, 1062, 1184
HaeIII GGCC 4 cut(s) 170, 439, 1158, 1285
HapII CCGG 2 cut(s) 650, 1286
HhaI GCGC 2 cut(s) 412, 1066
Hin1II CATG 6 cut(s) 157, 228, 461, 736, 796, 1229
Hin6I GCGC 2 cut(s) 410, 1064
HinP1I GCGC 2 cut(s) 410, 1064
HincII GTYRAC 1 cut(s) 1401
HindII GTYRAC 1 cut(s) 1401
HinfI GANTC 6 cut(s) 141, 324, 353, 740, 755, 896
HpaI GTTAAC 1 cut(s) 1401
HpaII CCGG 2 cut(s) 650, 1286
HphI GGTGA 5 cut(s) 214, 384, 415, 573, 937
Hpy166II GTNNAC 6 cut(s) 190, 700, 1103, 1275, 1401, 1416
Hpy188I TCNGA 6 cut(s) 140, 470, 936, 1209, 1310, 1319
Hpy188III TCNNGA 6 cut(s) 233, 328, 849, 946, 997, 1374
Hpy8I GTNNAC 6 cut(s) 190, 700, 1103, 1275, 1401, 1416
HpyAV CCTTC 3 cut(s) 53, 1371, 1380
HpyCH4III ACNGT 3 cut(s) 281, 483, 1304
HpyCH4IV ACGT 2 cut(s) 18, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 459
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 2 cut(s) 18, 1231
Hsp92II CATG 6 cut(s) 157, 228, 461, 736, 796, 1229
HspAI GCGC 2 cut(s) 410, 1064
KspAI GTTAAC 1 cut(s) 1401
Kzo9I GATC 2 cut(s) 206, 1079
LmnI GCTCC 4 cut(s) 118, 431, 640, 1297
Lsp1109I GCAGC 3 cut(s) 1045, 1048, 1170
LweI GCATC 3 cut(s) 990, 1012, 1323
MabI ACCWGGT 1 cut(s) 511
MaeI CTAG 5 cut(s) 39, 126, 591, 666, 1074
MaeII ACGT 2 cut(s) 18, 1231
MaeIII GTNAC 5 cut(s) 281, 403, 752, 760, 1357
MalI GATC 2 cut(s) 208, 1081
MboI GATC 2 cut(s) 206, 1079
MboII GAAGA 4 cut(s) 56, 833, 1086, 1344
MflI RGATCY 2 cut(s) 206, 1079
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 1158
MluCI AATT 5 cut(s) 307, 331, 444, 678, 1069
MluNI TGGCCA 1 cut(s) 1158
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 2 cut(s) 301, 1388
MnlI CCTC 8 cut(s) 312, 405, 730, 874, 942, 1123, 1275, 1313
Mox20I TGGCCA 1 cut(s) 1158
Mph1103I ATGCAT 3 cut(s) 155, 798, 1005
MroXI GAANNNNTTC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 1158
MseI TTAA 5 cut(s) 33, 69, 477, 693, 1400
MslI CAYNNNNRTG 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 1158
MspI CCGG 2 cut(s) 650, 1286
MspR9I CCNGG 4 cut(s) 373, 400, 513, 1170
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 4 cut(s) 373, 400, 513, 1170
MwoI GCNNNNNNNGC 2 cut(s) 235, 459
NcoI CCATGG 1 cut(s) 732
NdeII GATC 2 cut(s) 206, 1079
NlaIII CATG 6 cut(s) 157, 228, 461, 736, 796, 1229
NlaIV GGNNCC 4 cut(s) 169, 170, 369, 1081
NmuCI GTSAC 4 cut(s) 403, 752, 760, 1357
NsbI TGCGCA 1 cut(s) 411
NsiI ATGCAT 3 cut(s) 155, 798, 1005
NspI RCATGY 1 cut(s) 157
PaeI GCATGC 1 cut(s) 157
PasI CCCWGGG 2 cut(s) 372, 399
PceI AGGCCT 1 cut(s) 439
PctI GAATGC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 5 cut(s) 141, 324, 353, 740, 896
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 1060, 1063, 1185
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
PshAI GACNNNNGTC 1 cut(s) 941
PsiI TTATAA 1 cut(s) 959
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 4 cut(s) 371, 398, 511, 1168
PspGI CCWGG 4 cut(s) 371, 398, 511, 1168
PspN4I GGNNCC 4 cut(s) 169, 170, 369, 1081
PspOMI GGGCCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 168, 169
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 2 cut(s) 206, 1079
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 5 cut(s) 33, 69, 477, 693, 1400
SatI GCNGC 3 cut(s) 1059, 1062, 1184
Sau3AI GATC 2 cut(s) 206, 1079
Sau96I GGNCC 2 cut(s) 168, 169
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 4 cut(s) 373, 400, 513, 1170
SduI GDGCHC 1 cut(s) 172
SexAI ACCWGGT 1 cut(s) 511
SfaNI GCATC 3 cut(s) 990, 1012, 1323
SfcI CTRYAG 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 611, 1404
SmoI CTYRAG 2 cut(s) 611, 1404
SphI GCATGC 1 cut(s) 157
Sse9I AATT 5 cut(s) 307, 331, 444, 678, 1069
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 3 cut(s) 684, 1077, 1343
SspI AATATT 2 cut(s) 475, 1199
SspMI CTAG 5 cut(s) 39, 126, 591, 666, 1074
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 4 cut(s) 371, 398, 511, 1168
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 3 cut(s) 281, 483, 1304
TaiI ACGT 2 cut(s) 21, 1234
TaqI TCGA 5 cut(s) 257, 275, 327, 356, 998
TasI AATT 5 cut(s) 307, 331, 444, 678, 1069
TfiI GAWTC 5 cut(s) 141, 324, 353, 740, 896
Tru1I TTAA 5 cut(s) 33, 69, 477, 693, 1400
Tru9I TTAA 5 cut(s) 33, 69, 477, 693, 1400
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 4 cut(s) 403, 752, 760, 1357
TseI GCWGC 3 cut(s) 1058, 1061, 1183
Tsp45I GTSAC 4 cut(s) 403, 752, 760, 1357
TspDTI ATGAA 5 cut(s) 17, 325, 366, 1035, 1383
TspGWI ACGGA 2 cut(s) 329, 748
TspRI CASTG 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 259
XapI RAATTY 2 cut(s) 331, 1069
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 1166
XmiI GTMKAC 1 cut(s) 1274
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 5 cut(s) 39, 126, 591, 666, 1074
Zsp2I ATGCAT 3 cut(s) 155, 798, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.