Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002149

Physical Location & Seq

Genomic Coordinates Forward (+)

90382298 .. 90386336

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGAAATCAAACAGTTACTGGGAAGCAGAGTTGCCTCCTAATTATGACAGAGTTGGAATCGAGAATTTCATCCGTGCAAAGTGTTTGGGTGCTCATGTTATCCATTAGGTATGAATTGAAAAAATGGGTCCCCAGGGATGTCAAACTAAAATCACCTCCCAGGGTGACTGCGCAGAAAACTTCTGTTTACGGAGCAAGGCCTGAAATAAGTAGTAAGCATGGCGATGTCAGAAATATTGAACAGTCTTATGAGCAGAAAGTTGCTCATCCACCTGTTAGAATAAACAGGATACCACAGCAGGGACAGGTTAGTGATGATTTGAAACCGAAAAACATTGAAAAGAAATCACCAGAAGCTAGTCAAAATCCACGAGAACTTGAGCAGAAAACAGAACCATCAGCTCCAAAACCTGATCCAGCAGCTCCAAAACCTGAACCAGCAAGTCATAGAGCTAGTGCTACTCCAATTTCCACACCAGTTAAAGTGGACTATGCTACTGATTTGTTCAATATGCTCTCCATGGAGGAATCAAGAGGAAGTGACTCCGTGACATTCGCCAATAACATTACATTGGCTACTGTGCATTCTGCTGAAACAAAACTGGCAGAAGAGAAAAACAATGCACCAAAATCATCTGAAAGCAAGGTGCAATCAAAATATGGAATTGAGGACTTGTTTATAGATTCTCCATCAATCACTCAAACCTTTTCAGTGAAACCTCAGACTGATATCAAGAATGACATTACAAACTTATTTGAGAAGTCAAGTGTAGTTTCTCCATGCTCGATGCATCAACAACAACAACAAGCAATGCTCTCCCAACAACATTCATTACTAATGGCTGCTTCGCCAAATTCTAGCAGATCCCATTCCTTTTCTTCAAGTTTCCAACCTGCCTCCCAAGCTATTCACTTGCCCACACAAAATGGGCAAAGCGTTGGCCAACAAGTTCCTGGCAACCCAACGCCGCCTAATCTACAATATTATAGTCAGATTGGGAATGGTTATCATGCACGTCCAATAGGCAATGCAATTTCTTACTCGACATCGAGCTTGTATATGATGAGGCCGGTAGCTCCAATCAACGGTGTCAGAAGCATCGGAGGAAGCAGAATTTCAACAGCACTGCCAAAACCTTCTGTCACTCCAACTCCTTCGGGAAGGGACTTTGATTTTTCATCGTTAACTCAAGGATTGTTTACTAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

404

Amino Acids

44.35

Weight (kDa)

9.49

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220
malus_domestica	MD05G1324100.v1.1 MD10G1301800.v1.1 MD10G1301900.v1.1 MD10G1302000.v1.1
prunus_persica	Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1
pyrus_communis	pycom05g29840
rosa_chinensis	RchiOBHm_Chr5g0006621
rosa_laevigata	RLG00000031407
rosa_multiflora	Rmu_sc0001972.1_g000007
rosa_roxburghii	Rroxscaffold_1G00069390
rosa_rugosa	Rorug04G0423100 Rorug04G0423200 Rorug04G0423200
rosa_samantha	Rh5AG050600 Rh5BG049700 Rh5CG058200 Rh5DG049200
rosa_wichuraiana	Rw5G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	904
AciI	CCGC	1 cut(s)	971
AclWI	GGATC	2 cut(s)	410, 861
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	3 cut(s)	66, 856, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	302, 1088
AgsI	TTSAA	7 cut(s)	121, 242, 325, 341, 511, 885, 1122
AjiI	CACGTC	1 cut(s)	1019
AjnI	CCWGG	3 cut(s)	134, 161, 955
AluBI	AGCT	7 cut(s)	359, 404, 425, 455, 908, 1056, 1079
AluI	AGCT	7 cut(s)	359, 404, 425, 455, 908, 1056, 1079
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	410, 861
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	200, 943, 1070
ApeKI	GCWGC	2 cut(s)	422, 845
ApoI	RAATTY	3 cut(s)	66, 856, 1116
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	3 cut(s)	147, 178, 342
AvaII	GGWCC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	945
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	434, 832
BccI	CCATC	2 cut(s)	406, 700
BciT130I	CCWGG	3 cut(s)	136, 163, 957
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	360, 456, 861
BfuAI	ACCTGC	1 cut(s)	904
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	423, 846, 971
BlsI	GCNGC	3 cut(s)	424, 847, 972
Bme1390I	CCNGG	3 cut(s)	136, 163, 957
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	1019
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	131, 132
BmrFI	CCNGG	3 cut(s)	136, 163, 957
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	780, 802, 1110
BmuI	ACTGGG	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	401, 1176
BsaJI	CCNNGG	5 cut(s)	134, 135, 161, 162, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	1138, 1168
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 1088
Bse118I	RCCGGY	1 cut(s)	1072
Bse1I	ACTGG	3 cut(s)	25, 479, 609
Bse3DI	GCAATG	2 cut(s)	819, 1036
BseBI	CCWGG	3 cut(s)	136, 163, 957
BseDI	CCNNGG	5 cut(s)	134, 135, 161, 162, 522
BseGI	GGATG	3 cut(s)	71, 145, 268
BseLI	CCNNNNNNNGG	2 cut(s)	302, 1088
BseMI	GCAATG	2 cut(s)	819, 1036
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	3 cut(s)	25, 479, 609
BseXI	GCAGC	2 cut(s)	434, 832
BshFI	GGCC	3 cut(s)	202, 945, 1072
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	1073
BslFI	GGGAC	3 cut(s)	116, 318, 1181
BslI	CCNNNNNNNGG	2 cut(s)	302, 1088
BsmFI	GGGAC	3 cut(s)	116, 318, 1181
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	202, 945, 1072
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	415, 866
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	971
BspANI	GGCC	3 cut(s)	202, 945, 1072
BspCNI	CTCAG	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	131, 132
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	2 cut(s)	410, 861
BsrDI	GCAATG	2 cut(s)	819, 1036
BsrFI	RCCGGY	1 cut(s)	1072
BsrI	ACTGG	3 cut(s)	25, 479, 609
BssAI	RCCGGY	1 cut(s)	1072
BssECI	CCNNGG	5 cut(s)	134, 135, 161, 162, 522
BssMI	GATC	2 cut(s)	415, 866
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	136, 163, 957
Bst4CI	ACNGT	4 cut(s)	16, 246, 583, 1091
Bst6I	CTCTTC	1 cut(s)	606
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	71, 145, 268
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	418, 869
BstMBI	GATC	2 cut(s)	415, 866
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNI	CCWGG	3 cut(s)	136, 163, 957
BstSCI	CCNGG	3 cut(s)	134, 161, 955
BstV1I	GCAGC	2 cut(s)	434, 832
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	202, 945, 1072
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	1019
BtsCI	GGATG	3 cut(s)	71, 145, 268
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	2 cut(s)	720, 1127
BveI	ACCTGC	1 cut(s)	904
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	1072
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	5 cut(s)	97, 221, 523, 783, 1013
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	2 cut(s)	417, 868
DpnII	GATC	2 cut(s)	415, 866
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	3 cut(s)	134, 161, 955
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	5 cut(s)	100, 224, 526, 786, 1016
FaqI	GGGAC	3 cut(s)	116, 318, 1181
FatI	CATG	5 cut(s)	96, 220, 522, 782, 1012
Fnu4HI	GCNGC	3 cut(s)	423, 846, 971
FokI	GGATG	3 cut(s)	58, 152, 255
Fsp4HI	GCNGC	3 cut(s)	423, 846, 971
FspBI	CTAG	3 cut(s)	360, 456, 861
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	423, 846, 971
HaeIII	GGCC	3 cut(s)	202, 945, 1072
HapII	CCGG	1 cut(s)	1073
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	100, 224, 526, 786, 1016
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	1188
HindII	GTYRAC	1 cut(s)	1188
HinfI	GANTC	4 cut(s)	59, 530, 545, 686
HpaI	GTTAAC	1 cut(s)	1188
HpaII	CCGG	1 cut(s)	1073
HphI	GGTGA	3 cut(s)	147, 178, 342
Hpy166II	GTNNAC	4 cut(s)	190, 490, 1188, 1203
Hpy188I	TCNGA	6 cut(s)	233, 640, 726, 996, 1097, 1106
Hpy188III	TCNNGA	4 cut(s)	63, 534, 736, 1161
Hpy8I	GTNNAC	4 cut(s)	190, 490, 1188, 1203
HpyAV	CCTTC	3 cut(s)	1149, 1158, 1167
HpyCH4III	ACNGT	4 cut(s)	16, 246, 583, 1091
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	7 cut(s)	79, 586, 626, 652, 793, 1016, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	5 cut(s)	100, 224, 526, 786, 1016
HspAI	GCGC	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	1188
Kzo9I	GATC	2 cut(s)	415, 866
LmnI	GCTCC	4 cut(s)	194, 409, 430, 1084
Lsp1109I	GCAGC	2 cut(s)	434, 832
LweI	GCATC	3 cut(s)	780, 802, 1110
MaeI	CTAG	3 cut(s)	360, 456, 861
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	5 cut(s)	16, 166, 542, 550, 1144
MalI	GATC	2 cut(s)	417, 868
MboI	GATC	2 cut(s)	415, 866
MboII	GAAGA	2 cut(s)	623, 873
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	945
MluCI	AATT	8 cut(s)	42, 66, 116, 468, 666, 856, 1035, 1116
MluNI	TGGCCA	1 cut(s)	945
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	36, 916, 1175
MnlI	CCTC	9 cut(s)	47, 168, 520, 530, 664, 732, 910, 1062, 1100
Mox20I	TGGCCA	1 cut(s)	945
Mph1103I	ATGCAT	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	2 cut(s)	483, 1187
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	945
MspI	CCGG	1 cut(s)	1073
MspR9I	CCNGG	3 cut(s)	136, 163, 957
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	3 cut(s)	136, 163, 957
MwoI	GCNNNNNNNGC	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	415, 866
NlaIII	CATG	5 cut(s)	100, 224, 526, 786, 1016
NlaIV	GGNNCC	2 cut(s)	131, 132
NmuCI	GTSAC	4 cut(s)	166, 542, 550, 1144
NsbI	TGCGCA	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	795
PasI	CCCWGGG	2 cut(s)	135, 162
PceI	AGGCCT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	59, 530, 686
PkrI	GCNGC	3 cut(s)	424, 847, 972
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	134, 161, 955
PspGI	CCWGG	3 cut(s)	134, 161, 955
PspN4I	GGNNCC	2 cut(s)	131, 132
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	866
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	483, 1187
SatI	GCNGC	3 cut(s)	423, 846, 971
Sau3AI	GATC	2 cut(s)	415, 866
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	3 cut(s)	136, 163, 957
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	3 cut(s)	780, 802, 1110
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	380, 1191
SmoI	CTYRAG	2 cut(s)	380, 1191
Sse9I	AATT	8 cut(s)	42, 66, 116, 468, 666, 856, 1035, 1116
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	971
SspI	AATATT	2 cut(s)	238, 986
SspMI	CTAG	3 cut(s)	360, 456, 861
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	134, 161, 955
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	16, 246, 583, 1091
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	4 cut(s)	62, 788, 1046, 1052
TasI	AATT	8 cut(s)	42, 66, 116, 468, 666, 856, 1035, 1116
TauI	GCSGC	1 cut(s)	973
TfiI	GAWTC	3 cut(s)	59, 530, 686
Tru1I	TTAA	2 cut(s)	483, 1187
Tru9I	TTAA	2 cut(s)	483, 1187
TscAI	CASTG	2 cut(s)	720, 1134
TseFI	GTSAC	4 cut(s)	166, 542, 550, 1144
TseI	GCWGC	2 cut(s)	422, 845
Tsp45I	GTSAC	4 cut(s)	166, 542, 550, 1144
TspDTI	ATGAA	4 cut(s)	60, 129, 822, 1170
TspGWI	ACGGA	3 cut(s)	64, 207, 538
TspRI	CASTG	2 cut(s)	720, 1134
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	3 cut(s)	66, 856, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	953
XspI	CTAG	3 cut(s)	360, 456, 861
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.