Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002149

Physical Location & Seq

Genomic Coordinates Reverse (-)

1788918 .. 1793435

Gene Structure 4518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G038100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAACCAGAAGGCAAACGTTTCTAAAGAGCTTAATGCCAGACACAGAAAGATATTGGAGGGTCTTCTTAAACAACCAGGGAACAGAGAATGTGCAGACTGCAAAACCAAAGCTCCACGATGGGCTAGTGTGAATCTTGGGATCTTCATATGCATGCAATGTTCGGGGATCCACAGGAGTCTTGGGGTACATATATCAAAGGTGAGATCTGCCACATTGGACACATGGCTTCCAGAGCAGGTTGCATTTATCCAATCTATGGGAAACGAGAAATCAAATAGTTTTTGGGAAGCAGAGTTGCCTCCTAATTATGACAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAACACAAGAAGTGGGTTCCTAGGGATGGAAAAGCAAAATCACCTCCAAGGGTGAGTGAAGAGAAGAATTCCGTTTATAGAGCGAGACCTGAAACTAGTAGTCAGCATGGCCATGTGAAAGAGACGGAACGATTTTTTGAAAAGCAGAAAGGTGCTCATCCACCCAGTGCAAGTAACAGGGCACCTCAGCAGGTCAGTCATGATCCAAAACAACACCAACTTGAGCAAAAATCAAAACCAGAAGCAGCCTTGAAAGCTGAACCTGCAGCAAGTCAACCACCTAGTGCTGCTACGGTTTCCCTACCAGTTAAAGTGGATTATGCTACTCATCTGTTCAATTTGCTCTCTGTGGAAGAATCTAGAGGAAATGACTATGTGACATCTGCCAATAAGAATACATTGACTGGTCTCCATGCAGATGAAACAAAATTGACTGAAGAGAAAAGTAAAAAATCAGAATCATCTGAAAGCAAGATTCAGCCAAAATATGGTTATGGTATTGAGGATTTATTTATAGATTCAACCCCAGTCACTCAACCCTTTTCAATGAAACCCCAGAATGACGTTATGAACTTACTTGAGAAGTCCAGTACGGCTTCTCCATTCTCCATGCATCAACAGCAACTTGCAGTTCTATCTCAACAACAGTCGTCACTCATGGCAGTTGCAGCGAAATCTAGCACACCCCATTCAATTCCTGCAAACCTACAACCTGGATCCCATGCTATCCACTTGCCAACTCAAAATGGGCAAAGCATTGGCCGCCAAGTTCCTGGAAACCTGATGCCTGCTCATCCTCCTCCACAACATTATACTCAGATTGGAAACGGCAGTCCTACACACCCGGTAGGGAATGCAGTTCCTTTCCCAACATCAAGCATGTATGCGACAAGGCCAGTAACTTCAGTGAATGGTGTCACAAACCTTAGAGCTACCGGATTTTCAACAGCGTCACCGATATCTTCCATCCCTCCCACTAAGTCAGGAAGGGATTTTGATTTCTCATCATTAACTCAAGGATTGTTTACTAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

463

Amino Acids

50.72

Weight (kDa)

9.48

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220 FvH4_3g04220
malus_domestica	MD05G1324100.v1.1 MD10G1301800.v1.1 MD10G1301900.v1.1 MD10G1302000.v1.1
prunus_persica	Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1 Prupe.4G038100_v2.0.a1
pyrus_communis	pycom05g29840
rosa_chinensis	RchiOBHm_Chr5g0006621
rosa_laevigata	RLG00000031407
rosa_multiflora	Rmu_sc0001972.1_g000007
rosa_roxburghii	Rroxscaffold_1G00069390
rosa_rugosa	Rorug04G0423100 Rorug04G0423200 Rorug04G0423200
rosa_samantha	Rh5AG050600 Rh5BG049700 Rh5CG058200 Rh5DG049200
rosa_wichuraiana	Rw5G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	229, 532, 622
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	2 cut(s)	259, 839
AciI	CCGC	1 cut(s)	1114
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	6 cut(s)	149, 163, 176, 548, 1062, 1075
AcoI	YGGCCR	2 cut(s)	460, 1111
AcsI	RAATTY	2 cut(s)	331, 418
AcuI	CTGAAG	2 cut(s)	807, 1239
AdeI	CACNNNGTG	2 cut(s)	518, 635
AfaI	GTAC	2 cut(s)	189, 943
AfiI	CCNNNNNNNGG	3 cut(s)	259, 377, 839
AgsI	TTSAA	8 cut(s)	329, 491, 604, 688, 873, 897, 1044, 1296
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	3 cut(s)	76, 1063, 1123
AluBI	AGCT	4 cut(s)	31, 113, 608, 1283
AluI	AGCT	4 cut(s)	31, 113, 608, 1283
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	3 cut(s)	430, 467, 764
AlwI	GGATC	6 cut(s)	149, 163, 176, 548, 1062, 1075
AoxI	GGCC	3 cut(s)	460, 1111, 1244
ApeKI	GCWGC	4 cut(s)	596, 617, 638, 1019
ApoI	RAATTY	2 cut(s)	331, 418
AspA2I	CCTAGG	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	1196
AsuHPI	GGTGA	4 cut(s)	214, 384, 415, 1296
AvrII	CCTAGG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	462
BamHI	GGATCC	2 cut(s)	168, 1067
BanI	GGYRCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	608, 625, 629, 1031
BccI	CCATC	3 cut(s)	114, 371, 1325
BceAI	ACGGC	2 cut(s)	960, 1195
BciT130I	CCWGG	3 cut(s)	78, 1065, 1125
BcnI	CCSGG	1 cut(s)	1196
BcoDI	GTCTC	3 cut(s)	430, 467, 764
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	6 cut(s)	126, 372, 447, 633, 711, 1029
BfmI	CTRYAG	1 cut(s)	615
BfuAI	ACCTGC	3 cut(s)	229, 532, 622
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	5 cut(s)	597, 618, 639, 1020, 1114
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	5 cut(s)	598, 619, 640, 1021, 1115
Bme1390I	CCNGG	4 cut(s)	78, 1065, 1125, 1196
BmiI	GGNNCC	4 cut(s)	170, 369, 534, 1069
BmrFI	CCNGG	4 cut(s)	78, 1065, 1125, 1196
BmrI	ACTGGG	2 cut(s)	510, 872
BmsI	GCATC	2 cut(s)	973, 1125
BmuI	ACTGGG	2 cut(s)	510, 872
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	3 cut(s)	593, 950, 1350
BpuMI	CCSGG	1 cut(s)	1196
BsaI	GGTCTC	2 cut(s)	430, 764
BsaJI	CCNNGG	3 cut(s)	77, 371, 398
BsaWI	WCCGGW	1 cut(s)	1286
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 934, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 377, 839
Bse1I	ACTGG	6 cut(s)	516, 656, 760, 878, 939, 1247
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	3 cut(s)	78, 1065, 1125
BseDI	CCNNGG	3 cut(s)	77, 371, 398
BseGI	GGATG	4 cut(s)	382, 508, 1144, 1317
BseLI	CCNNNNNNNGG	3 cut(s)	259, 377, 839
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	551, 1181
BseNI	ACTGG	6 cut(s)	516, 656, 760, 878, 939, 1247
BseRI	GAGGAG	1 cut(s)	1140
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	4 cut(s)	608, 625, 629, 1031
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	462, 1113, 1246
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	1196, 1287
BslI	CCNNNNNNNGG	3 cut(s)	259, 377, 839
BsmAI	GTCTC	3 cut(s)	430, 467, 764
BsmBI	CGTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	1210
BsnI	GGCC	3 cut(s)	462, 1113, 1246
Bso31I	GGTCTC	2 cut(s)	430, 764
Bsp1286I	GDGCHC	2 cut(s)	508, 535
Bsp143I	GATC	5 cut(s)	141, 168, 206, 553, 1067
BspACI	CCGC	1 cut(s)	1114
BspANI	GGCC	3 cut(s)	462, 1113, 1246
BspCNI	CTCAG	2 cut(s)	550, 1180
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	4 cut(s)	170, 369, 534, 1069
BspMAI	CTGCAG	1 cut(s)	619
BspMI	ACCTGC	3 cut(s)	229, 532, 622
BspPI	GGATC	6 cut(s)	149, 163, 176, 548, 1062, 1075
BspT107I	GGYRCC	1 cut(s)	532
BspTNI	GGTCTC	2 cut(s)	430, 764
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	6 cut(s)	516, 656, 760, 878, 939, 1247
BssECI	CCNNGG	3 cut(s)	77, 371, 398
BssMI	GATC	5 cut(s)	141, 168, 206, 553, 1067
BssT1I	CCWWGG	2 cut(s)	371, 398
Bst2UI	CCWGG	3 cut(s)	78, 1065, 1125
Bst4CI	ACNGT	2 cut(s)	646, 999
Bst6I	CTCTTC	2 cut(s)	405, 783
BstC8I	GCNNGC	2 cut(s)	155, 1140
BstDEI	CTNAG	4 cut(s)	537, 1167, 1277, 1329
BstF5I	GGATG	4 cut(s)	382, 508, 1144, 1317
BstKTI	GATC	5 cut(s)	144, 171, 209, 556, 1070
BstMAI	GTCTC	3 cut(s)	430, 467, 764
BstMBI	GATC	5 cut(s)	141, 168, 206, 553, 1067
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 605, 614, 970, 1019, 1113
BstNI	CCWGG	3 cut(s)	78, 1065, 1125
BstNSI	RCATGY	2 cut(s)	157, 1234
BstSCI	CCNGG	4 cut(s)	76, 1063, 1123, 1194
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	4 cut(s)	608, 625, 629, 1031
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	4 cut(s)	141, 168, 206, 1067
BstXI	CCANNNNNNTGG	1 cut(s)	1124
BstYI	RGATCY	4 cut(s)	141, 168, 206, 1067
BsuRI	GGCC	3 cut(s)	462, 1113, 1246
BtsCI	GGATG	4 cut(s)	382, 508, 1144, 1317
BtsIMutI	CAGTG	2 cut(s)	523, 1263
BveI	ACCTGC	3 cut(s)	229, 532, 622
Cac8I	GCNNGC	2 cut(s)	155, 1140
CciI	TCATGA	1 cut(s)	550
CseI	GACGC	1 cut(s)	1290
Csp6I	GTAC	2 cut(s)	188, 942
CviQI	GTAC	2 cut(s)	188, 942
DdeI	CTNAG	4 cut(s)	537, 1167, 1277, 1329
DpnI	GATC	5 cut(s)	143, 170, 208, 555, 1069
DpnII	GATC	5 cut(s)	141, 168, 206, 553, 1067
DraIII	CACNNNGTG	2 cut(s)	518, 635
EaeI	YGGCCR	2 cut(s)	460, 1111
Eam1104I	CTCTTC	2 cut(s)	405, 783
EarI	CTCTTC	2 cut(s)	405, 783
Eco130I	CCWWGG	2 cut(s)	371, 398
Eco31I	GGTCTC	2 cut(s)	430, 764
Eco32I	GATATC	1 cut(s)	1311
Eco57I	CTGAAG	2 cut(s)	807, 1239
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	76, 1063, 1123
EcoRV	GATATC	1 cut(s)	1311
EcoT14I	CCWWGG	2 cut(s)	371, 398
EcoT22I	ATGCAT	2 cut(s)	155, 966
ErhI	CCWWGG	2 cut(s)	371, 398
Esp3I	CGTCTC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	597, 618, 639, 1020, 1114
FokI	GGATG	4 cut(s)	389, 495, 1131, 1304
Fsp4HI	GCNGC	5 cut(s)	597, 618, 639, 1020, 1114
FspBI	CTAG	6 cut(s)	126, 372, 447, 633, 711, 1029
GluI	GCNGC	5 cut(s)	597, 618, 639, 1020, 1114
HaeIII	GGCC	3 cut(s)	462, 1113, 1246
HapII	CCGG	2 cut(s)	1196, 1287
HgaI	GACGC	1 cut(s)	1290
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HinfI	GANTC	6 cut(s)	133, 178, 707, 809, 826, 869
HpaII	CCGG	2 cut(s)	1196, 1287
HphI	GGTGA	4 cut(s)	214, 384, 415, 1296
Hpy166II	GTNNAC	2 cut(s)	626, 1377
Hpy188I	TCNGA	3 cut(s)	808, 817, 1170
Hpy188III	TCNNGA	4 cut(s)	233, 551, 711, 1335
Hpy8I	GTNNAC	2 cut(s)	626, 1377
HpyAV	CCTTC	2 cut(s)	4, 1332
HpyCH4III	ACNGT	2 cut(s)	646, 999
HpyCH4IV	ACGT	2 cut(s)	18, 915
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 605, 614, 970, 1019, 1113
HpyF3I	CTNAG	4 cut(s)	537, 1167, 1277, 1329
HpySE526I	ACGT	2 cut(s)	18, 915
Kzo9I	GATC	5 cut(s)	141, 168, 206, 553, 1067
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	4 cut(s)	608, 625, 629, 1031
LweI	GCATC	2 cut(s)	973, 1125
MaeI	CTAG	6 cut(s)	126, 372, 447, 633, 711, 1029
MaeII	ACGT	2 cut(s)	18, 915
MaeIII	GTNAC	7 cut(s)	524, 727, 880, 1002, 1249, 1267, 1302
MalI	GATC	5 cut(s)	143, 170, 208, 555, 1069
MboI	GATC	5 cut(s)	141, 168, 206, 553, 1067
MboII	GAAGA	7 cut(s)	56, 136, 422, 427, 716, 800, 1305
MflI	RGATCY	4 cut(s)	141, 168, 206, 1067
MhlI	GDGCHC	2 cut(s)	508, 535
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	7 cut(s)	307, 324, 331, 418, 688, 779, 1044
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	9 cut(s)	52, 312, 405, 546, 707, 847, 1158, 1161, 1332
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	2 cut(s)	155, 966
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	4 cut(s)	33, 69, 660, 1361
MslI	CAYNNNNRTG	3 cut(s)	152, 462, 768
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	2 cut(s)	1196, 1287
MspR9I	CCNGG	4 cut(s)	78, 1065, 1125, 1196
Mva1269I	GAATGC	1 cut(s)	1210
MvaI	CCWGG	3 cut(s)	78, 1065, 1125
MwoI	GCNNNNNNNGC	6 cut(s)	235, 605, 614, 970, 1019, 1113
NciI	CCSGG	1 cut(s)	1196
NdeI	CATATG	1 cut(s)	149
NdeII	GATC	5 cut(s)	141, 168, 206, 553, 1067
NlaIV	GGNNCC	4 cut(s)	170, 369, 534, 1069
NmuCI	GTSAC	5 cut(s)	727, 880, 1002, 1267, 1302
NsiI	ATGCAT	2 cut(s)	155, 966
NspI	RCATGY	2 cut(s)	157, 1234
PaeI	GCATGC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	550
PctI	GAATGC	1 cut(s)	1210
PfeI	GAWTC	5 cut(s)	133, 707, 809, 826, 869
PflMI	CCANNNNNTGG	2 cut(s)	259, 839
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	5 cut(s)	598, 619, 640, 1021, 1115
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	76, 1063, 1123
PspGI	CCWGG	3 cut(s)	76, 1063, 1123
PspN4I	GGNNCC	4 cut(s)	170, 369, 534, 1069
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	4 cut(s)	141, 168, 206, 1067
RsaI	GTAC	2 cut(s)	189, 943
RsaNI	GTAC	2 cut(s)	188, 942
RseI	CAYNNNNRTG	3 cut(s)	152, 462, 768
SaqAI	TTAA	4 cut(s)	33, 69, 660, 1361
SatI	GCNGC	5 cut(s)	597, 618, 639, 1020, 1114
Sau3AI	GATC	5 cut(s)	141, 168, 206, 553, 1067
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	4 cut(s)	78, 1065, 1125, 1196
SduI	GDGCHC	2 cut(s)	508, 535
SfaNI	GCATC	2 cut(s)	973, 1125
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	3 cut(s)	152, 462, 768
SmlI	CTYRAG	3 cut(s)	572, 929, 1365
SmoI	CTYRAG	3 cut(s)	572, 929, 1365
SpeI	ACTAGT	1 cut(s)	446
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	7 cut(s)	307, 324, 331, 418, 688, 779, 1044
SsiI	CCGC	1 cut(s)	1114
SspMI	CTAG	6 cut(s)	126, 372, 447, 633, 711, 1029
StyD4I	CCNGG	4 cut(s)	76, 1063, 1123, 1194
StyI	CCWWGG	2 cut(s)	371, 398
TaaI	ACNGT	2 cut(s)	646, 999
TaiI	ACGT	2 cut(s)	21, 918
TasI	AATT	7 cut(s)	307, 324, 331, 418, 688, 779, 1044
TauI	GCSGC	1 cut(s)	1116
TfiI	GAWTC	5 cut(s)	133, 707, 809, 826, 869
Tru1I	TTAA	4 cut(s)	33, 69, 660, 1361
Tru9I	TTAA	4 cut(s)	33, 69, 660, 1361
TscAI	CASTG	2 cut(s)	523, 1263
TseFI	GTSAC	5 cut(s)	727, 880, 1002, 1267, 1302
TseI	GCWGC	4 cut(s)	596, 617, 638, 1019
Tsp45I	GTSAC	5 cut(s)	727, 880, 1002, 1267, 1302
TspDTI	ATGAA	7 cut(s)	17, 136, 325, 366, 786, 914, 935
TspGWI	ACGGA	2 cut(s)	412, 491
TspRI	CASTG	2 cut(s)	523, 1263
Van91I	CCANNNNNTGG	2 cut(s)	259, 839
XapI	RAATTY	2 cut(s)	331, 418
XbaI	TCTAGA	1 cut(s)	710
XceI	RCATGY	2 cut(s)	157, 1234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	371
XspI	CTAG	6 cut(s)	126, 372, 447, 633, 711, 1029
Zsp2I	ATGCAT	2 cut(s)	155, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.