Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Forward (+)

3640027 .. 3647097

Gene Structure 7071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3564 bp

ATGACTATTAGCTGCAATTCTATACCAGAGGCTGAGCCAATGGAATCAGACACTCCAGATGAAATCCGCCGAGCTTCGCCGGACTTCGATCACTGGACCTCACTCATTTCGCAGATAGAGAATTCATCTCCGGATGACATAGAGAAACTATGCTCAGTGTATGATTCTTTTCTGGCCGAGTTTCCGTTGTGCCATGGATATTGGAGAAGGTATGCTGACCATAAGATGCGCCTATGCTCCATTGACAAAGTTGTTGAGGTCTTTGAACGAGCTGTGCAGGCTGCAACCTACTGCGTTCCGCTGTGGCTGGACTACTGTGTCTTCAGTATCTCCTGCTTCGAAGATCCATCCGATATTCGCAGACTATTTAAAAGAGGCATGTCATTTGTTGGGAAGGACTATGCGTGCTATACTTTGTGGGACAAGTACATTGAATTTGAGTATTCTCAGCAGGAGTGGAGTTCGCTGGCTCAGATTTACATCCAAGCTCTTAGGTTCCCTACCAAGAAGTTGCATGTTTACTATGCAAGTTTGAAGAAGTTGGCTACCTTGTTTGAAGAGGAGATGAAAAGCCAGAGTAATTCTACTGTGGATTTGCATTTCGAAGCTGTAGTTGATGGTGAAGTCCCCAGGTTTTTTGGAGATGATGAAATTTCACTTGTAGTTAAAGACCTTCTAGATCCAGCAATTGGCCCAGGAAGGTCAAAAGCACTGCAAAGATACATATATATCGGGGAACAGTTGTATCAAAAAGCATGCCAACTTGATGAAAAGATTGGTGCTTTTGAGATTAATATAAAGAGGTCTTACTTCCATGTGAAGGAGCTTGATGCTGGTCAGTTGGAGAATTGGCATCGGTATTTGGACTATGTTGAGATGCAAGGCGATTTTGATTGGGCGGTGAAGCTTTACGAGAGGTGTTTGATTTCCTGTGCTAACTACCCTGATTTTTGGATGCGTTATGTGGATTTCATGGAAATCAATGGAGGAAGAGAGATTGCAAACTTTTCTCTTGACCGAGCAACCCAAATATTTGTGAAGAGAGTGTCGGTGATTCATCTCTTGAATGCCAGGTTTAAGGAGCAAATAGGAGATATGCTTGGTGCTCGTGCAGCTCTTCTTCAATTTAATGCAGAGTCAGATACACATTTTGTCAAGAATGTTATCTTAAAGGCTAACATGGAAAAACGTACGGGAAATTTCACAGCAGCTTCCACTATATTCAGGGAAGCTCTAGCAATGGCTGCACAGAAGAAACAGTTGCATACTCTTGCTAACTTATATGTTCATTTCTCTCGGCTTACATTCATGATGAGTGATAGTGCAGATGCTGCACGAGATGTCTTGATAGATGGTATCAAACAATTGCCTCACTGCAAAGTACTTCTAGAGGAGTTGATAAAGTTCACAATGATGAATGGAGGGACGCAGCACGTAAATATGGTAGACTCTATTGTAGCCCATGCGATATCTCGGGAATCTGGAGTATGTGCTGGTCTGGATGCAAAAGATGCTGAGGATATTTCAAGCTTATTTTTAGAGTTTGTTGACCTCTGTGGAACCATCCATGAAGTAAGAAAGGTGTGGACTCGGCATGTACGATTGTTCCCCTCTTCCCTTAGGACAACTTCCTTGGCTCAGCAGTCTGCCTTTAATGTTTCTGATCAGCAAGCTACATTTACAAAGTCTTCACATTTTCCTAGAGAAAAGGAGGAAACTTTTGTTGTGCCTCAGCAGCCATCTAGAGATTGTACTTCTGACTCCATGATTGAGCTCCCATTATATGATGAGGAAATGTTATTCCCAGAAAATCAAATTACAGAGTGTGGCCAGGATCCCACACACCAGCTATCAGACCAGACATTGCCATCAAAACAACCTGAAAATCTACAGGAAAGATTGCAGCTTACATCTCTGGAAATTTCAAAAGAGCAGTCCCCAGATAATGCACCAGAAGCAAATATGTCCTCCATAGAAGAAGTGAATGTGGTATCACAGGAAGTATCTGCTGAGGCCCCAGATGCCCCTCTAGCAGAAGTGAAACAGGTATCTACGGAAGTTTCTGAAGTGGCTACACAAAATACCCATATAGCAGAAGTGAAAAAGGTATCTCGGGAAGTTTCCAAGGAGGCCAGAGAAGACATCCCTGAACCCAAGATGTCATCTGTAGAATTTGGATTTCAAGTTGCTGAAGGAAATGATTCGATAGAATCTTCACAAGCAAACACCATGGGCAGCAATGTTGATCAGGAGTGTGACTATAAGAGTGAACAAGACCCAAAGCCACTGTCTTTGGAAAGGCTTTCTTTGAATTCCCAGGAAAATACAAATTTGGATCTAATACCCTCCACTTGTCCCAAGTCTGAAGCTTCTCCAGGAACCTACACTTCAAACGGAAAGAAGCTAGAAAGTAATCAAGAGACTTATATGCACAGCCCAAGAAATTCAAGATTGTCAGAATCAGCTGGAAATGAAGCAGCTAGTGGTATGCCTATCCCTGTGTTTTCTCAGCCACATGCAAATAGTTATGGAGACAGGAGTCAAACTAATCGTTCTGATAAAGTTGGTAAAGAGTCAAACTTTGGGTTTCGAATGCAGTTACAAAGAAAATCACTTCCACAGCAGCGTGTTCCTCCACAGAAATACCTGCGAACTGAAGCCGGTAATCCAATGCCTGCAAGTCAAGGTCACACTTCTATATTTGCACCTTCGCAAAACCAGCAAATTCAGCAAGGCAGCCAGCAGGCTCAGCATCACAATCAGTATCAGGTTGCAAGTGCTCATGCTAATTTAACAGCACCTAATTCCGGGCCTATACCTAATGTACAAGCCGCCAATGATGCCTCTTCATCTCAGCCCCCATTGCCTGTCCAACCTGTTGCTCCACAGATGCCTCAGTCATCAGTATTAGGCAATGGGCAGTACGCAACGCAGAATACCTATTATCAGATGTGGCAATATTATTACTACCAGCAACAGCAATCCCTTCTGCAACAACAGCAGCAGCATCCGCAGCAGCAGCAGCATCCGCAGCAGCAGCAGCAGTTGTTATTACAACAGTATCAACAGCAGCAACTTCAACAATATTATGTTCAGATGCAACAGCAGCAACTTCTTTTCCAACAACAGCAGCAATTTCAACCAACACAGCAACAAGTTCCTTTGCAACAACAGCAACAACTTCCTTTGCAACAACAGCAGCAATCTCAAGTACTAAAGCAGCTTCCGTTGCAAGAACAGCAGCAGCTTCAACAACTACAGCAACAACTTCAGCAATTTCAGCAACCACTTCCTATGCCACAGCAACAACAGTTTTTATTGCAACAACAATACAATCAGCAATTGCAGTTACAACAACAGCATCCATTCTACATGCAGAAGCATCAACAGCCAGTCCAACAACAATCACATCTACAGGAACAACATCAAATCAGTCGGTCATCAATTCAGCAAAACTACTCCCACCATCAGGATCAAGCAGGTGTAGTACAAAATTCAGATGTGCACGGTGGGACAGTATCCTCCTTATCTCCTCACTCCCCAGTAGAATCTCCGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1188

Amino Acids

135.57

Weight (kDa)

5.32

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	19 - 175	2.1e-10	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	21 - 179	9.1e-51	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	21 - 165	9.9e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	258 - 397	1.5e-41	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3470
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	2 cut(s)	2655, 3470
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	1446
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	7 cut(s)	67, 299, 899, 2832, 3011, 3029, 3554
AclWI	GGATC	6 cut(s)	338, 674, 1829, 1842, 2343, 3480
AcoI	YGGCCR	2 cut(s)	174, 1828
AcuI	CTGAAG	6 cut(s)	307, 2085, 2211, 2385, 2676, 3254
AfaI	GTAC	9 cut(s)	428, 1192, 1383, 1599, 1753, 2826, 2924, 3213, 3489
AfiI	CCNNNNNNNGG	4 cut(s)	689, 820, 2807, 3469
AjnI	CCWGG	6 cut(s)	629, 694, 1070, 1830, 2316, 2374
Alw21I	GWGCWC	4 cut(s)	1108, 1776, 2782, 3507
Alw26I	GTCTC	2 cut(s)	2414, 2526
Alw44I	GTGCAC	1 cut(s)	3503
AlwI	GGATC	6 cut(s)	338, 674, 1829, 1842, 2343, 3480
AlwNI	CAGNNNCTG	2 cut(s)	32, 1331
Ama87I	CYCGRG	2 cut(s)	1473, 2112
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	6 cut(s)	174, 691, 1828, 2013, 2130, 2810
ApaLI	GTGCAC	1 cut(s)	3503
ArsI	GACNNNNNNTTYG	4 cut(s)	1919, 1951, 2273, 2305
AseI	ATTAAT	1 cut(s)	792
Asp700I	GAANNNNTTC	1 cut(s)	2200
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	96, 692, 2014, 2810
AsuC2I	CCSGG	1 cut(s)	2809
AsuHPI	GGTGA	3 cut(s)	632, 913, 1063
AsuII	TTCGAA	3 cut(s)	339, 603, 2590
AvaI	CYCGRG	2 cut(s)	1473, 2112
AvaII	GGWCC	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	1619
BaeGI	GKGCMC	1 cut(s)	3507
BaeI	ACNNNNGTAYC	4 cut(s)	728, 761, 3044, 3077
BalI	TGGCCA	1 cut(s)	1830
BamHI	GGATCC	1 cut(s)	1834
BanII	GRGCYC	1 cut(s)	1776
BauI	CACGAG	2 cut(s)	1107, 1335
BbsI	GAAGAC	3 cut(s)	313, 1680, 2145
Bbv12I	GWGCWC	4 cut(s)	1108, 1776, 2782, 3507
BbvCI	CCTCAGC	3 cut(s)	1515, 1731, 2010
BccI	CCATC	7 cut(s)	355, 611, 1346, 1571, 1747, 1876, 3474
BciT130I	CCWGG	6 cut(s)	631, 696, 1072, 1832, 2318, 2376
BciVI	GTATCC	1 cut(s)	3529
BclI	TGATCA	2 cut(s)	1663, 2245
BcnI	CCSGG	1 cut(s)	2809
BcoDI	GTCTC	2 cut(s)	2414, 2526
BfaI	CTAG	8 cut(s)	677, 1235, 1388, 1701, 1743, 2030, 2405, 2481
BfmI	CTRYAG	5 cut(s)	609, 1889, 2166, 3257, 3413
BfuAI	ACCTGC	2 cut(s)	2655, 3470
BfuI	GTATCC	1 cut(s)	3529
BlpI	GCTNAGC	3 cut(s)	33, 1638, 2748
BmcAI	AGTACT	2 cut(s)	1383, 3213
Bme1390I	CCNGG	7 cut(s)	631, 696, 1072, 1832, 2318, 2376, 2809
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	1473, 2112
BmgT120I	GGNCC	4 cut(s)	96, 692, 2014, 2810
BmiI	GGNNCC	5 cut(s)	497, 1561, 1836, 2016, 2380
BmrFI	CCNGG	7 cut(s)	631, 696, 1072, 1832, 2318, 2376, 2809
BmrI	ACTGGG	1 cut(s)	3536
BmuI	ACTGGG	1 cut(s)	3536
BoxI	GACNNNNGTC	1 cut(s)	2538
BpiI	GAAGAC	3 cut(s)	313, 1680, 2145
BpmI	CTGGAG	3 cut(s)	39, 1503, 2358
Bpu10I	CCTNAGC	3 cut(s)	1515, 1731, 2010
Bpu1102I	GCTNAGC	3 cut(s)	33, 1638, 2748
Bpu14I	TTCGAA	3 cut(s)	339, 603, 2590
BpuEI	CTTGAG	1 cut(s)	3192
BpuMI	CCSGG	1 cut(s)	2809
BsaAI	YACGTR	1 cut(s)	1435
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	7 cut(s)	193, 629, 694, 1632, 2124, 2229, 2316
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	4 cut(s)	689, 820, 2807, 3469
Bse118I	RCCGGY	1 cut(s)	2660
Bse1I	ACTGG	3 cut(s)	98, 3392, 3542
Bse21I	CCTNAGG	1 cut(s)	1619
Bse3DI	GCAATG	5 cut(s)	1245, 1862, 2245, 2861, 2920
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	6 cut(s)	631, 696, 1072, 1832, 2318, 2376
BseDI	CCNNGG	7 cut(s)	193, 629, 694, 1632, 2124, 2229, 2316
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	4 cut(s)	689, 820, 2807, 3469
BseMI	GCAATG	5 cut(s)	1245, 1862, 2245, 2861, 2920
BseNI	ACTGG	3 cut(s)	98, 3392, 3542
BseRI	GAGGAG	3 cut(s)	575, 1406, 3522
BseSI	GKGCMC	1 cut(s)	3507
BsgI	GTGCAG	5 cut(s)	296, 1131, 1230, 1317, 1344
BshFI	GGCC	6 cut(s)	176, 693, 1830, 2015, 2132, 2812
BsiHKAI	GWGCWC	4 cut(s)	1108, 1776, 2782, 3507
BsiHKCI	CYCGRG	2 cut(s)	1473, 2112
BsiSI	CCGG	4 cut(s)	80, 131, 2661, 2808
BsiWI	CGTACG	1 cut(s)	1190
BslFI	GGGAC	6 cut(s)	434, 611, 1438, 1921, 2340, 3526
BslI	CCNNNNNNNGG	4 cut(s)	689, 820, 2807, 3469
BsmAI	GTCTC	2 cut(s)	2414, 2526
BsmFI	GGGAC	6 cut(s)	434, 611, 1438, 1921, 2340, 3526
BsmI	GAATGC	2 cut(s)	1072, 2598
BsnI	GGCC	6 cut(s)	176, 693, 1830, 2015, 2132, 2812
BsoBI	CYCGRG	2 cut(s)	1473, 2112
Bsp119I	TTCGAA	3 cut(s)	339, 603, 2590
Bsp1286I	GDGCHC	4 cut(s)	1108, 1776, 2782, 3507
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	2824
Bsp143I	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
Bsp1720I	GCTNAGC	3 cut(s)	33, 1638, 2748
Bsp19I	CCATGG	2 cut(s)	193, 2229
BspACI	CCGC	7 cut(s)	67, 299, 899, 2832, 3011, 3029, 3554
BspANI	GGCC	6 cut(s)	176, 693, 1830, 2015, 2132, 2812
BspEI	TCCGGA	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	1308
BspLI	GGNNCC	5 cut(s)	497, 1561, 1836, 2016, 2380
BspMI	ACCTGC	2 cut(s)	2655, 3470
BspPI	GGATC	6 cut(s)	338, 674, 1829, 1842, 2343, 3480
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	3 cut(s)	339, 603, 2590
BsrDI	GCAATG	5 cut(s)	1245, 1862, 2245, 2861, 2920
BsrFI	RCCGGY	1 cut(s)	2660
BsrGI	TGTACA	1 cut(s)	2824
BsrI	ACTGG	3 cut(s)	98, 3392, 3542
BssAI	RCCGGY	1 cut(s)	2660
BssECI	CCNNGG	7 cut(s)	193, 629, 694, 1632, 2124, 2229, 2316
BssMI	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
BssSI	CACGAG	2 cut(s)	1107, 1335
BssT1I	CCWWGG	4 cut(s)	193, 1632, 2124, 2229
Bst2BI	CACGAG	2 cut(s)	1107, 1335
Bst2UI	CCWGG	6 cut(s)	631, 696, 1072, 1832, 2318, 2376
Bst4CI	ACNGT	9 cut(s)	317, 589, 741, 1260, 2289, 3060, 3312, 3509, 3517
Bst6I	CTCTTC	6 cut(s)	552, 985, 1034, 1122, 1618, 2851
BstAPI	GCANNNNNTGC	3 cut(s)	1244, 1331, 1511
BstAUI	TGTACA	1 cut(s)	2824
BstBAI	YACGTR	1 cut(s)	1435
BstBI	TTCGAA	3 cut(s)	339, 603, 2590
BstC8I	GCNNGC	8 cut(s)	279, 406, 468, 757, 1671, 2676, 2741, 2745
BstDSI	CCRYGG	2 cut(s)	193, 2229
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	8 cut(s)	91, 346, 682, 1666, 1837, 2248, 2338, 3475
BstMAI	GTCTC	2 cut(s)	2414, 2526
BstMBI	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
BstNI	CCWGG	6 cut(s)	631, 696, 1072, 1832, 2318, 2376
BstNSI	RCATGY	6 cut(s)	382, 518, 759, 1598, 2519, 3376
BstPAI	GACNNNNGTC	1 cut(s)	2538
BstSCI	CCNGG	7 cut(s)	629, 694, 1070, 1830, 2316, 2374, 2807
BstSFI	CTRYAG	5 cut(s)	609, 1889, 2166, 3257, 3413
BstSLI	GKGCMC	1 cut(s)	3507
BstV2I	GAAGAC	3 cut(s)	313, 1680, 2145
BstX2I	RGATCY	4 cut(s)	343, 679, 1834, 2335
BstYI	RGATCY	4 cut(s)	343, 679, 1834, 2335
Bsu36I	CCTNAGG	1 cut(s)	1619
BsuI	GTATCC	1 cut(s)	3529
BsuRI	GGCC	6 cut(s)	176, 693, 1830, 2015, 2132, 2812
BtgI	CCRYGG	2 cut(s)	193, 2229
BtsI	GCAGTG	2 cut(s)	710, 1372
BtsIMutI	CAGTG	5 cut(s)	91, 162, 710, 1372, 2285
BveI	ACCTGC	2 cut(s)	2655, 3470
Cac8I	GCNNGC	8 cut(s)	279, 406, 468, 757, 1671, 2676, 2741, 2745
CaiI	CAGNNNCTG	2 cut(s)	32, 1331
CciI	TCATGA	1 cut(s)	1308
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	2660
Cfr13I	GGNCC	4 cut(s)	96, 692, 2014, 2810
CseI	GACGC	1 cut(s)	1435
Csp6I	GTAC	9 cut(s)	427, 1191, 1382, 1598, 1752, 2825, 2923, 3212, 3488
CspCI	CAANNNNNGTGG	2 cut(s)	2274, 2309
CviQI	GTAC	9 cut(s)	427, 1191, 1382, 1598, 1752, 2825, 2923, 3212, 3488
DpnI	GATC	8 cut(s)	90, 345, 681, 1665, 1836, 2247, 2337, 3474
DpnII	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
DraI	TTTAAA	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	174, 1828
Eam1104I	CTCTTC	6 cut(s)	552, 985, 1034, 1122, 1618, 2851
EarI	CTCTTC	6 cut(s)	552, 985, 1034, 1122, 1618, 2851
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	1774
Eco130I	CCWWGG	4 cut(s)	193, 1632, 2124, 2229
Eco24I	GRGCYC	1 cut(s)	1776
Eco32I	GATATC	1 cut(s)	1470
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	1774
Eco57I	CTGAAG	6 cut(s)	307, 2085, 2211, 2385, 2676, 3254
Eco81I	CCTNAGG	1 cut(s)	1619
Eco88I	CYCGRG	2 cut(s)	1473, 2112
EcoICRI	GAGCTC	1 cut(s)	1774
EcoO109I	RGGNCCY	1 cut(s)	2014
EcoRI	GAATTC	2 cut(s)	121, 2311
EcoRII	CCWGG	6 cut(s)	629, 694, 1070, 1830, 2316, 2374
EcoRV	GATATC	1 cut(s)	1470
EcoT14I	CCWWGG	4 cut(s)	193, 1632, 2124, 2229
EcoT38I	GRGCYC	1 cut(s)	1776
ErhI	CCWWGG	4 cut(s)	193, 1632, 2124, 2229
FalI	AAGNNNNNCTT	2 cut(s)	2290, 2322
FaqI	GGGAC	6 cut(s)	434, 611, 1438, 1921, 2340, 3526
FbaI	TGATCA	2 cut(s)	1663, 2245
FblI	GTMKAC	1 cut(s)	1446
FriOI	GRGCYC	1 cut(s)	1776
FspBI	CTAG	8 cut(s)	677, 1235, 1388, 1701, 1743, 2030, 2405, 2481
GlaI	GCGC	1 cut(s)	230
GsuI	CTGGAG	3 cut(s)	39, 1503, 2358
HaeIII	GGCC	6 cut(s)	176, 693, 1830, 2015, 2132, 2812
HapII	CCGG	4 cut(s)	80, 131, 2661, 2808
HgaI	GACGC	1 cut(s)	1435
HhaI	GCGC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	1549
HindII	GTYRAC	1 cut(s)	1549
HindIII	AAGCTT	3 cut(s)	905, 1528, 2367
HpaII	CCGG	4 cut(s)	80, 131, 2661, 2808
HphI	GGTGA	3 cut(s)	632, 913, 1063
Hpy166II	GTNNAC	7 cut(s)	520, 1407, 1447, 1549, 1587, 2270, 3505
Hpy8I	GTNNAC	7 cut(s)	520, 1407, 1447, 1549, 1587, 2270, 3505
HpyAV	CCTTC	8 cut(s)	201, 388, 683, 693, 814, 2186, 2718, 2996
HpyCH4III	ACNGT	9 cut(s)	317, 589, 741, 1260, 2289, 3060, 3312, 3509, 3517
HpyCH4IV	ACGT	2 cut(s)	1189, 1434
HpySE526I	ACGT	2 cut(s)	1189, 1434
HspAI	GCGC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	130
Ksp22I	TGATCA	2 cut(s)	1663, 2245
Kzo9I	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	5 cut(s)	242, 823, 1081, 1779, 2887
MaeI	CTAG	8 cut(s)	677, 1235, 1388, 1701, 1743, 2030, 2405, 2481
MaeII	ACGT	2 cut(s)	1189, 1434
MaeIII	GTNAC	4 cut(s)	2255, 2598, 2687, 3348
MalI	GATC	8 cut(s)	90, 345, 681, 1665, 1836, 2247, 2337, 3474
MboI	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
MfeI	CAATTG	3 cut(s)	687, 1364, 3341
MflI	RGATCY	4 cut(s)	343, 679, 1834, 2335
MhlI	GDGCHC	4 cut(s)	1108, 1776, 2782, 3507
MlsI	TGGCCA	1 cut(s)	1830
MluNI	TGGCCA	1 cut(s)	1830
MlyI	GAGTC	6 cut(s)	1145, 1442, 1582, 1754, 2548, 2582
MmeI	TCCRAC	4 cut(s)	822, 2896, 3145, 3421
Mox20I	TGGCCA	1 cut(s)	1830
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	2200
MscI	TGGCCA	1 cut(s)	1830
MseI	TTAA	8 cut(s)	369, 666, 792, 1077, 1128, 1169, 1653, 2792
MslI	CAYNNNNRTG	1 cut(s)	1412
Msp20I	TGGCCA	1 cut(s)	1830
MspA1I	CMGCKG	2 cut(s)	301, 2465
MspI	CCGG	4 cut(s)	80, 131, 2661, 2808
MspR9I	CCNGG	7 cut(s)	631, 696, 1072, 1832, 2318, 2376, 2809
MunI	CAATTG	3 cut(s)	687, 1364, 3341
Mva1269I	GAATGC	2 cut(s)	1072, 2598
MvaI	CCWGG	6 cut(s)	631, 696, 1072, 1832, 2318, 2376
NciI	CCSGG	1 cut(s)	2809
NcoI	CCATGG	2 cut(s)	193, 2229
NdeII	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
NlaIV	GGNNCC	5 cut(s)	497, 1561, 1836, 2016, 2380
NmeAIII	GCCGAG	4 cut(s)	95, 202, 1276, 1570
NmuCI	GTSAC	2 cut(s)	2255, 2687
NspI	RCATGY	6 cut(s)	382, 518, 759, 1598, 2519, 3376
NspV	TTCGAA	3 cut(s)	339, 603, 2590
PaeI	GCATGC	1 cut(s)	759
PagI	TCATGA	1 cut(s)	1308
PaqCI	CACCTGC	1 cut(s)	3470
PciSI	GCTCTTC	1 cut(s)	1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1597
PctI	GAATGC	2 cut(s)	1072, 2598
PdmI	GAANNNNTTC	1 cut(s)	2200
PfeI	GAWTC	8 cut(s)	44, 164, 1054, 1478, 2201, 2210, 2459, 3548
Pfl23II	CGTACG	1 cut(s)	1190
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	2374
PleI	GAGTC	6 cut(s)	1144, 1442, 1582, 1754, 2547, 2581
PpsI	GAGTC	6 cut(s)	1144, 1442, 1582, 1754, 2547, 2581
Ppu21I	YACGTR	1 cut(s)	1435
PshAI	GACNNNNGTC	1 cut(s)	2538
PshBI	ATTAAT	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	1776
Psp6I	CCWGG	6 cut(s)	629, 694, 1070, 1830, 2316, 2374
PspGI	CCWGG	6 cut(s)	629, 694, 1070, 1830, 2316, 2374
PspLI	CGTACG	1 cut(s)	1190
PspN4I	GGNNCC	5 cut(s)	497, 1561, 1836, 2016, 2380
PspPI	GGNCC	4 cut(s)	96, 692, 2014, 2810
PstNI	CAGNNNCTG	2 cut(s)	32, 1331
PsuI	RGATCY	4 cut(s)	343, 679, 1834, 2335
PvuII	CAGCTG	1 cut(s)	2465
RsaI	GTAC	9 cut(s)	428, 1192, 1383, 1599, 1753, 2826, 2924, 3213, 3489
RsaNI	GTAC	9 cut(s)	427, 1191, 1382, 1598, 1752, 2825, 2923, 3212, 3488
RseI	CAYNNNNRTG	1 cut(s)	1412
SacI	GAGCTC	1 cut(s)	1776
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	8 cut(s)	369, 666, 792, 1077, 1128, 1169, 1653, 2792
Sau3AI	GATC	8 cut(s)	88, 343, 679, 1663, 1834, 2245, 2335, 3472
Sau96I	GGNCC	4 cut(s)	96, 692, 2014, 2810
ScaI	AGTACT	2 cut(s)	1383, 3213
SchI	GAGTC	6 cut(s)	1145, 1442, 1582, 1754, 2548, 2582
ScrFI	CCNGG	7 cut(s)	631, 696, 1072, 1832, 2318, 2376, 2809
SduI	GDGCHC	4 cut(s)	1108, 1776, 2782, 3507
SfcI	CTRYAG	5 cut(s)	609, 1889, 2166, 3257, 3413
SfuI	TTCGAA	3 cut(s)	339, 603, 2590
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	1412
SmlI	CTYRAG	1 cut(s)	3207
SmoI	CTYRAG	1 cut(s)	3207
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	7 cut(s)	67, 299, 899, 2832, 3011, 3029, 3554
SspI	AATATT	3 cut(s)	1032, 2960, 3086
SspMI	CTAG	8 cut(s)	677, 1235, 1388, 1701, 1743, 2030, 2405, 2481
SstI	GAGCTC	1 cut(s)	1776
StyD4I	CCNGG	7 cut(s)	629, 694, 1070, 1830, 2316, 2374, 2807
StyI	CCWWGG	4 cut(s)	193, 1632, 2124, 2229
TaaI	ACNGT	9 cut(s)	317, 589, 741, 1260, 2289, 3060, 3312, 3509, 3517
TaiI	ACGT	2 cut(s)	1192, 1437
TaqI	TCGA	5 cut(s)	87, 339, 603, 2204, 2590
TaqII	GACCGA	2 cut(s)	1032, 3426
TatI	WGTACW	6 cut(s)	426, 1381, 1751, 2824, 3211, 3487
TauI	GCSGC	1 cut(s)	2834
TfiI	GAWTC	8 cut(s)	44, 164, 1054, 1478, 2201, 2210, 2459, 3548
Tru1I	TTAA	8 cut(s)	369, 666, 792, 1077, 1128, 1169, 1653, 2792
Tru9I	TTAA	8 cut(s)	369, 666, 792, 1077, 1128, 1169, 1653, 2792
TscAI	CASTG	5 cut(s)	98, 162, 717, 1379, 2292
TseFI	GTSAC	2 cut(s)	2255, 2687
Tsp45I	GTSAC	2 cut(s)	2255, 2687
TspGWI	ACGGA	4 cut(s)	174, 2069, 2409, 3216
TspRI	CASTG	5 cut(s)	98, 162, 717, 1379, 2292
Van91I	CCANNNNNTGG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	3503
VpaK11BI	GGWCC	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	792
XbaI	TCTAGA	3 cut(s)	676, 1387, 1742
XceI	RCATGY	6 cut(s)	382, 518, 759, 1598, 2519, 3376
XmiI	GTMKAC	1 cut(s)	1446
XmnI	GAANNNNTTC	1 cut(s)	2200
XspI	CTAG	8 cut(s)	677, 1235, 1388, 1701, 1743, 2030, 2405, 2481
ZrmI	AGTACT	2 cut(s)	1383, 3213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.