Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Reverse (-)

9217826 .. 9225176

Gene Structure 7351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3261 bp

ATGTCCTTTGTTCGAAAGGACTATGGGTGCTATACTTTGTGGGACAAATACATTGAATTTGAGTACTCTCAGCAGGAATGGAGTTCACTGGCCCTGATTTACATCCAAGCTCTTAGATTCCCTACCAAGAAGTTGCATATTTATTATGCGAGTTTGAAGAAGTTGGCTACCTTGTTTGAAGAGGAGATGAAAAGCCAGAGTAATTCTACTGTGGATTTGCAGTCAGAAGCTTTATTTGATGGTGAAGTCCCTAGGTTTTTTGGAGATGATGAAATTTCTCTTGTAGTCAAAGACCTTCTGGATCCAGCAATTGGCTCAGGAAGGTCTAAAGCACTGCAAAGATACATATGTATTGGGAAACAGTTGTATCACGAAGCATGCCAGCTTGATGAAAAGATTGGTACTTTTGAGATTAATATAAGGAGGTCTTACTTCCATGTAAAGGAGCTTGATGCGGGTCAGTTGGAGAATTGGCATCGCTATCTGGACTATGTTGAGATGCAAGGGGATTTTGATTGGGCGGTGAAGCTTTATGAGAGGTGCTTGATTCCCTGTGCTAATTACCCTGAGTTTTGGATGCGTTATGTGGATTTCGTGGAAATCAATGGAGGAAGAGAAATTGCAAACTATTCTCTTGACCGAGCAACCCAAATATTTGTGAAGAGAGTGTCGGTGATTCATCTTTTGAATGCCAAGTTTAAGGAGCAAATAGGAGATGTACTTGGTGCCCGTGCGGCTCTTCTTCAATGTAATGCAGAGTCAGATACACACTTCGTTAAGAATGTTATCTTAAAGGCTAATATGGAAAAACGTTTGGGAAATTTCACAGCAGCTTCCACTATATTCAGAGAAGCTCTAGCAATGGCTGCAGAGAAGAAACAGTCGCATACTCTTCCTATTCTATATGTTCATTTCTCTCGCCTTACATTCATGATGACTGATAGTGCAGATGCTGCACGAGATGTCTTGATAGATGGCATCAACCAATTGCCTCACTGCAAAGTACTTCTAGAGGAGTTGATAAAGTTTGCAATGATGAATGGAGGGAAGCAGCACATAAATGTGATAGACTCTGTTGTAACCCGTGCTATATCTCAGGAATCAGGAGTATGCAATGGTCTGAATGCAAAAGATGCTGAGGATATTTCAAGCTTATTTTTAGAGTTTGTTGACCTCTGTGGAACCATCCATGAAGTAAGAAAGGTGTTGACTCGGCATGTACGATTGTTCCCTTCTTCCATTAGGCCATCTTCCTTGGGTCAGCAGTCTACCTTTAATGTTTATGATCAGCAAGCTACATTCACAAAGTCTTTGAATTTGCCTAGAGAAAAAGAGGAAACTTCTGCTGCTATGACTCAGCAGCCATCTAGAGATTGTACTTCTGACATGATTGAGCTCCCGTTGCATGATGAAGTAATGTTATTGCCAGAAAATCATACTAAAGAGTGTGGCCAGGATCCCGCATACCAGCTATCAGACCAGACATTGCCATCAAAACAATTTGAAAATCTACAGGAAAGATTGCAGCTGACATCTCCGGAAGTTTCAAAAGAGCAGTCCCCAGCTAATGCACCAGAAGCAAATATATCCTCCACCGTAGTAGAAGTGAATCTGGTATCTCAGGAAGTATCTGACAAGGCCCCAGAAAATGCCCCTGTAGCAGAAGTGAAACAGGTATCCCGGGAAGTTTCTGAAGAGGCTACAGAAAATACCCATGTAGCAGAAGTGAAAAAGGTATCTCGAGAAGTTTCTGAGGAGCCCACAGAAAATATCCTTGTAGTAGAAGAGAAAAAAGTATCTCAGGAAGTTTCTGAGGAGGCCAGAGAAAACATCCCTAAACCAGAGATGTCGTCTGTAGAATTAGGATTTCAAGTTGCTGAAGGAAATGATTCTATAGAATCTTCACAAGAAAACACCATGGGAAGCAATGTTGATCGAGAGTGTGACTATAAGAGCGAACAAAACCCAAAGCCACTGTCCTTGGAGAGTCTTTCTTTGAATTCCCAGGAAAATACAAATTTGGATTTAGTATCATCCACTTCTCCCAAGTCTGAAGCTTCTCCAGAAACCTGTACTTCAAATGGAAAGAAGCTAGAGAGTGATTGCAACTCTGATCAAGACTCTTATATGCACAGCCCACGAAATGATAGATCGTTAGAATCAGCTGGAAATGAATTAGTCAATGCTATGCCTATCCCAGTGTTTTCTCAGCCACCTGCAAATAGTTGTGGAGACTGGAGTCAAATTAATCGTTCTGATAAAGTTGGTAAAGATTCCAAATTGGGCTTTCGGATGCAGTTACAAAAATCACATCCACAGCAGCATGTTCCTCCAAAGAAATACCCGCGAACTGAAGCAGGTCATCCAATGCCTGCAAGTCAAGGTCACCCCTCTATATTAACACCTTCACAAAACCAACAAATTCAGCAAGGCAGCCAGCAGGCCCAGCATCACAATCAGTATCAGGTAGCAAGTGGTCATGCTAATATAGCAGCACCTAATTCCGGGCCTATACCAAATGTACAAGCCGCCAATGATGCCTCTTCATCTCAGTCTCTATTGCCTGTCCAACCTGTTGCTCCACAGATGCCTCAGTCATCAGTATCAGGCAATGGGCAGTATGCGATGCAGAATCCTCAAGCATATAATCAGATGTGGCAATATTATTACTACCAGCAGCAGCAATCCCTTCTGCAACCACAGCAGCATCTTCCCCAGCAGCAGCAGCAGCAGCAGTTGTTATTGCAACAGTATCAGCAGCAGCAGCAACTTCAACAATATTACGTTCAGATGCAACAGCAACAACTTCTTTTCCAACAACAGCAGCAATTTCAACCAACACAGCAACAACTTCCTTTGCAACAACAGCAACAACTTCCTTTGCAACAACAACAGCAATCTCAAGTACTAAAGCAGCTTCCTTTGCAAGAGCAGCAGCAATTTCAGCAACTACAGCAACAACTTCAGCAATTTCAACAACTGCAGCAACAACTTCCTGTACAACAACAACAACAATTTCCGTCGCAACAACAATACAATCCGCAATTGCAATTACAACAACAGCATCCATTCTATGTGCATAAGCATCAACTGCCACTCCAACAACAATCACATCTACAGGAACAACATCAAATCAATCAGTCATCGATTCAGCAGAACTACTCACACCATCAGGATCAAGCACAAAATTCAGATATTCATGGTGGGACGGTCATATCCTCCTTATCTCCTCACAGCCCAGTAGAACCTCCCCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1086

Amino Acids

123.5

Weight (kDa)

5.34

Isoelectric Point (pI)

70.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	3 - 53	8.7e-09	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	132 - 271	2.8e-41	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2224
Acc36I	ACCTGC	2 cut(s)	2224, 2348
AccB1I	GGYRCC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	1268
AccII	CGCG	1 cut(s)	2347
AccIII	TCCGGA	1 cut(s)	1537
AciI	CCGC	7 cut(s)	455, 521, 734, 1461, 2345, 2529, 3041
AclI	AACGTT	1 cut(s)	811
AclWI	GGATC	5 cut(s)	296, 309, 1451, 1464, 3183
AcoI	YGGCCR	1 cut(s)	1450
AcsI	RAATTY	8 cut(s)	56, 273, 820, 1315, 1999, 2017, 2421, 3187
AcuI	CTGAAG	5 cut(s)	1713, 1899, 2073, 2373, 2948
AfiI	CCNNNNNNNGG	3 cut(s)	311, 442, 2504
AjnI	CCWGG	2 cut(s)	1452, 2004
Alw21I	GWGCWC	1 cut(s)	1398
Alw26I	GTCTC	2 cut(s)	2226, 2559
AlwI	GGATC	5 cut(s)	296, 309, 1451, 1464, 3183
AlwNI	CAGNNNCTG	1 cut(s)	953
Ama87I	CYCGRG	2 cut(s)	1680, 1740
Aor13HI	TCCGGA	1 cut(s)	1537
AoxI	GGCC	7 cut(s)	90, 1244, 1450, 1638, 1818, 2442, 2507
ApoI	RAATTY	8 cut(s)	56, 273, 820, 1315, 1999, 2017, 2421, 3187
ArsI	GACNNNNNNTTYG	4 cut(s)	1541, 1573, 1961, 1993
AseI	ATTAAT	2 cut(s)	414, 2247
Asp700I	GAANNNNTTC	1 cut(s)	1888
AspA2I	CCTAGG	1 cut(s)	251
AspS9I	GGNCC	4 cut(s)	91, 1639, 2443, 2507
AsuC2I	CCSGG	3 cut(s)	1681, 1682, 2506
AsuHPI	GGTGA	4 cut(s)	254, 535, 685, 2378
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	1680, 1740
AvrII	CCTAGG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	730
BaeI	ACNNNNGTAYC	4 cut(s)	334, 350, 367, 383
BalI	TGGCCA	1 cut(s)	1452
BamHI	GGATCC	2 cut(s)	301, 1456
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	2 cut(s)	1398, 1761
BauI	CACGAG	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	1398
BbvCI	CCTCAGC	1 cut(s)	1137
BccI	CCATC	7 cut(s)	233, 968, 1193, 1255, 1372, 1498, 3177
BciT130I	CCWGG	2 cut(s)	1454, 2006
BciVI	GTATCC	1 cut(s)	1687
BclI	TGATCA	2 cut(s)	1285, 2113
BcnI	CCSGG	3 cut(s)	1681, 1682, 2506
BcoDI	GTCTC	2 cut(s)	2226, 2559
BfaI	CTAG	6 cut(s)	252, 857, 1010, 1323, 1368, 2093
BfmI	CTRYAG	9 cut(s)	867, 1511, 1656, 1701, 1854, 1893, 2951, 2981, 3116
BfuAI	ACCTGC	2 cut(s)	2224, 2348
BfuI	GTATCC	1 cut(s)	1687
BglI	GCCNNNNNGGC	1 cut(s)	734
BlnI	CCTAGG	1 cut(s)	251
BmcAI	AGTACT	3 cut(s)	65, 1005, 2907
Bme1390I	CCNGG	5 cut(s)	1454, 1681, 1682, 2006, 2506
BmeT110I	CYCGRG	2 cut(s)	1680, 1740
BmgT120I	GGNCC	4 cut(s)	91, 1639, 2443, 2507
BmiI	GGNNCC	6 cut(s)	303, 727, 1183, 1458, 1641, 1758
BmrFI	CCNGG	5 cut(s)	1454, 1681, 1682, 2006, 2506
BmrI	ACTGGG	2 cut(s)	2192, 3233
BmuI	ACTGGG	2 cut(s)	2192, 3233
BoxI	GACNNNNGTC	1 cut(s)	2238
BpmI	CTGGAG	2 cut(s)	2046, 2257
Bpu10I	CCTNAGC	2 cut(s)	316, 1137
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	2 cut(s)	2622, 2886
BpuMI	CCSGG	3 cut(s)	1681, 1682, 2506
Bsa29I	ATCGAT	1 cut(s)	3146
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	6 cut(s)	251, 1254, 1680, 1917, 1980, 2004
BsaWI	WCCGGW	1 cut(s)	1537
BsaXI	ACNNNNNCTCC	2 cut(s)	3081, 3111
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 442, 2504
Bse1I	ACTGG	4 cut(s)	93, 2198, 2240, 3239
Bse3DI	GCAATG	6 cut(s)	867, 1038, 1120, 1484, 1933, 2617
Bse8I	GATNNNNATC	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	1537
BseBI	CCWGG	2 cut(s)	1454, 2006
BseCI	ATCGAT	1 cut(s)	3146
BseDI	CCNNGG	6 cut(s)	251, 1254, 1680, 1917, 1980, 2004
BseGI	GGATG	9 cut(s)	102, 582, 1185, 1830, 2033, 2298, 2311, 2362, 3064
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	3 cut(s)	311, 442, 2504
BseMI	GCAATG	6 cut(s)	867, 1038, 1120, 1484, 1933, 2617
BseNI	ACTGG	4 cut(s)	93, 2198, 2240, 3239
BseRI	GAGGAG	5 cut(s)	197, 1028, 1769, 1829, 3219
BseSI	GKGCMC	1 cut(s)	730
BseYI	CCCAGC	3 cut(s)	1561, 2445, 2715
BsgI	GTGCAG	2 cut(s)	939, 966
Bsh1236I	CGCG	1 cut(s)	2347
BshFI	GGCC	7 cut(s)	92, 1246, 1452, 1640, 1820, 2444, 2509
BshNI	GGYRCC	1 cut(s)	725
BshVI	ATCGAT	1 cut(s)	3146
BsiHKAI	GWGCWC	1 cut(s)	1398
BsiHKCI	CYCGRG	2 cut(s)	1680, 1740
BsiSI	CCGG	3 cut(s)	1538, 1681, 2505
BslFI	GGGAC	4 cut(s)	56, 233, 1543, 3220
BslI	CCNNNNNNNGG	3 cut(s)	311, 442, 2504
BsmAI	GTCTC	2 cut(s)	2226, 2559
BsmFI	GGGAC	4 cut(s)	56, 233, 1543, 3220
BsmI	GAATGC	2 cut(s)	694, 1129
BsnI	GGCC	7 cut(s)	92, 1246, 1452, 1640, 1820, 2444, 2509
BsoBI	CYCGRG	2 cut(s)	1680, 1740
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	730, 1398, 1761
Bsp13I	TCCGGA	1 cut(s)	1537
Bsp1407I	TGTACA	2 cut(s)	2521, 2998
Bsp143I	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
Bsp19I	CCATGG	1 cut(s)	1917
BspACI	CCGC	7 cut(s)	455, 521, 734, 1461, 2345, 2529, 3041
BspANI	GGCC	7 cut(s)	92, 1246, 1452, 1640, 1820, 2444, 2509
BspDI	ATCGAT	1 cut(s)	3146
BspEI	TCCGGA	1 cut(s)	1537
BspFNI	CGCG	1 cut(s)	2347
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	6 cut(s)	303, 727, 1183, 1458, 1641, 1758
BspMAI	CTGCAG	2 cut(s)	871, 2985
BspMI	ACCTGC	2 cut(s)	2224, 2348
BspPI	GGATC	5 cut(s)	296, 309, 1451, 1464, 3183
BspQI	GCTCTTC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	725
BsrDI	GCAATG	6 cut(s)	867, 1038, 1120, 1484, 1933, 2617
BsrGI	TGTACA	2 cut(s)	2521, 2998
BsrI	ACTGG	4 cut(s)	93, 2198, 2240, 3239
BssECI	CCNNGG	6 cut(s)	251, 1254, 1680, 1917, 1980, 2004
BssMI	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	4 cut(s)	251, 1254, 1917, 1980
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	2 cut(s)	1454, 2006
Bst4CI	ACNGT	7 cut(s)	211, 363, 882, 1597, 1977, 2751, 3211
Bst6I	CTCTTC	8 cut(s)	174, 607, 656, 744, 897, 1689, 1779, 2548
BstAPI	GCANNNNNTGC	4 cut(s)	866, 953, 1133, 3091
BstAUI	TGTACA	2 cut(s)	2521, 2998
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	6 cut(s)	379, 383, 1293, 2373, 2438, 2442
BstDSI	CCRYGG	1 cut(s)	1917
BstEII	GGTNACC	1 cut(s)	2384
BstF5I	GGATG	9 cut(s)	102, 582, 1185, 1830, 2033, 2298, 2311, 2362, 3064
BstFNI	CGCG	1 cut(s)	2347
BstKTI	GATC	7 cut(s)	304, 1288, 1459, 1936, 2116, 2153, 3178
BstMAI	GTCTC	2 cut(s)	2226, 2559
BstMBI	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
BstNI	CCWGG	2 cut(s)	1454, 2006
BstNSI	RCATGY	3 cut(s)	381, 1220, 2327
BstPAI	GACNNNNGTC	1 cut(s)	2238
BstPI	GGTNACC	1 cut(s)	2384
BstSCI	CCNGG	5 cut(s)	1452, 1679, 1680, 2004, 2504
BstSFI	CTRYAG	9 cut(s)	867, 1511, 1656, 1701, 1854, 1893, 2951, 2981, 3116
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	2347
BstX2I	RGATCY	2 cut(s)	301, 1456
BstYI	RGATCY	2 cut(s)	301, 1456
Bsu15I	ATCGAT	1 cut(s)	3146
BsuI	GTATCC	1 cut(s)	1687
BsuRI	GGCC	7 cut(s)	92, 1246, 1452, 1640, 1820, 2444, 2509
BsuTUI	ATCGAT	1 cut(s)	3146
BtgI	CCRYGG	1 cut(s)	1917
BtgZI	GCGATG	2 cut(s)	461, 2639
BtsCI	GGATG	9 cut(s)	102, 582, 1185, 1830, 2033, 2298, 2311, 2362, 3064
BtsI	GCAGTG	2 cut(s)	332, 994
BtsIMutI	CAGTG	5 cut(s)	86, 332, 994, 1973, 2205
BveI	ACCTGC	2 cut(s)	2224, 2348
Cac8I	GCNNGC	6 cut(s)	379, 383, 1293, 2373, 2438, 2442
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	1 cut(s)	930
Cfr13I	GGNCC	4 cut(s)	91, 1639, 2443, 2507
Cfr9I	CCCGGG	1 cut(s)	1680
ClaI	ATCGAT	1 cut(s)	3146
CspCI	CAANNNNNGTGG	2 cut(s)	1962, 1997
DpnI	GATC	7 cut(s)	303, 1287, 1458, 1935, 2115, 2152, 3177
DpnII	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
EaeI	YGGCCR	1 cut(s)	1450
Eam1104I	CTCTTC	8 cut(s)	174, 607, 656, 744, 897, 1689, 1779, 2548
EarI	CTCTTC	8 cut(s)	174, 607, 656, 744, 897, 1689, 1779, 2548
Ecl136II	GAGCTC	1 cut(s)	1396
Eco130I	CCWWGG	4 cut(s)	251, 1254, 1917, 1980
Eco24I	GRGCYC	2 cut(s)	1398, 1761
Eco53kI	GAGCTC	1 cut(s)	1396
Eco57I	CTGAAG	5 cut(s)	1713, 1899, 2073, 2373, 2948
Eco88I	CYCGRG	2 cut(s)	1680, 1740
Eco91I	GGTNACC	1 cut(s)	2384
EcoICRI	GAGCTC	1 cut(s)	1396
EcoO109I	RGGNCCY	1 cut(s)	1639
EcoO65I	GGTNACC	1 cut(s)	2384
EcoRI	GAATTC	1 cut(s)	1999
EcoRII	CCWGG	2 cut(s)	1452, 2004
EcoT14I	CCWWGG	4 cut(s)	251, 1254, 1917, 1980
EcoT38I	GRGCYC	2 cut(s)	1398, 1761
ErhI	CCWWGG	4 cut(s)	251, 1254, 1917, 1980
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	4 cut(s)	56, 233, 1543, 3220
FauI	CCCGC	3 cut(s)	448, 1468, 2352
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	2 cut(s)	1285, 2113
FblI	GTMKAC	1 cut(s)	1268
FokI	GGATG	9 cut(s)	89, 589, 1172, 1817, 2020, 2298, 2305, 2349, 3051
FriOI	GRGCYC	2 cut(s)	1398, 1761
FspBI	CTAG	6 cut(s)	252, 857, 1010, 1323, 1368, 2093
GsaI	CCCAGC	3 cut(s)	1565, 2449, 2719
GsuI	CTGGAG	2 cut(s)	2046, 2257
HaeIII	GGCC	7 cut(s)	92, 1246, 1452, 1640, 1820, 2444, 2509
HapII	CCGG	3 cut(s)	1538, 1681, 2505
HincII	GTYRAC	2 cut(s)	1171, 1209
HindII	GTYRAC	2 cut(s)	1171, 1209
HindIII	AAGCTT	4 cut(s)	228, 527, 1150, 2055
HpaII	CCGG	3 cut(s)	1538, 1681, 2505
HphI	GGTGA	4 cut(s)	254, 535, 685, 2378
Hpy166II	GTNNAC	4 cut(s)	86, 1171, 1209, 1269
Hpy8I	GTNNAC	4 cut(s)	86, 1171, 1209, 1269
Hpy99I	CGWCG	1 cut(s)	3025
HpyAV	CCTTC	6 cut(s)	305, 315, 1242, 1874, 2415, 2699
HpyCH4III	ACNGT	7 cut(s)	211, 363, 882, 1597, 1977, 2751, 3211
HpyCH4IV	ACGT	2 cut(s)	811, 2784
HpySE526I	ACGT	2 cut(s)	811, 2784
Kpn2I	TCCGGA	1 cut(s)	1537
Ksp22I	TGATCA	2 cut(s)	1285, 2113
Kzo9I	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	5 cut(s)	445, 703, 1401, 1756, 2584
MaeI	CTAG	6 cut(s)	252, 857, 1010, 1323, 1368, 2093
MaeII	ACGT	2 cut(s)	811, 2784
MaeIII	GTNAC	4 cut(s)	1078, 1943, 2298, 2384
MalI	GATC	7 cut(s)	303, 1287, 1458, 1935, 2115, 2152, 3177
MboI	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
MfeI	CAATTG	3 cut(s)	309, 986, 3044
MflI	RGATCY	2 cut(s)	301, 1456
MhlI	GDGCHC	3 cut(s)	730, 1398, 1761
MlsI	TGGCCA	1 cut(s)	1452
MluNI	TGGCCA	1 cut(s)	1452
MlyI	GAGTC	7 cut(s)	767, 1064, 1204, 1348, 1996, 2114, 2248
MmeI	TCCRAC	4 cut(s)	444, 2593, 2839, 3124
Mox20I	TGGCCA	1 cut(s)	1452
MroI	TCCGGA	1 cut(s)	1537
MroXI	GAANNNNTTC	1 cut(s)	1888
MscI	TGGCCA	1 cut(s)	1452
MseI	TTAA	7 cut(s)	414, 699, 777, 791, 1275, 2247, 2399
MslI	CAYNNNNRTG	2 cut(s)	1059, 1061
Msp20I	TGGCCA	1 cut(s)	1452
MspA1I	CMGCKG	2 cut(s)	1528, 2165
MspI	CCGG	3 cut(s)	1538, 1681, 2505
MspR9I	CCNGG	5 cut(s)	1454, 1681, 1682, 2006, 2506
MunI	CAATTG	3 cut(s)	309, 986, 3044
Mva1269I	GAATGC	2 cut(s)	694, 1129
MvaI	CCWGG	2 cut(s)	1454, 2006
MvnI	CGCG	1 cut(s)	2347
NciI	CCSGG	3 cut(s)	1681, 1682, 2506
NcoI	CCATGG	1 cut(s)	1917
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
NlaIV	GGNNCC	6 cut(s)	303, 727, 1183, 1458, 1641, 1758
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	2 cut(s)	1943, 2384
NspI	RCATGY	3 cut(s)	381, 1220, 2327
NspV	TTCGAA	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	1740
PagI	TCATGA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	2224
PciSI	GCTCTTC	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	1219
PctI	GAATGC	2 cut(s)	694, 1129
PdmI	GAANNNNTTC	1 cut(s)	1888
PflMI	CCANNNNNTGG	1 cut(s)	311
PleI	GAGTC	7 cut(s)	766, 1064, 1204, 1348, 1995, 2114, 2247
PpsI	GAGTC	7 cut(s)	766, 1064, 1204, 1348, 1995, 2114, 2247
PshAI	GACNNNNGTC	1 cut(s)	2238
PshBI	ATTAAT	2 cut(s)	414, 2247
Psp124BI	GAGCTC	1 cut(s)	1398
Psp1406I	AACGTT	1 cut(s)	811
Psp6I	CCWGG	2 cut(s)	1452, 2004
PspEI	GGTNACC	1 cut(s)	2384
PspFI	CCCAGC	3 cut(s)	1561, 2445, 2715
PspGI	CCWGG	2 cut(s)	1452, 2004
PspN4I	GGNNCC	6 cut(s)	303, 727, 1183, 1458, 1641, 1758
PspPI	GGNCC	4 cut(s)	91, 1639, 2443, 2507
PstI	CTGCAG	2 cut(s)	871, 2985
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	301, 1456
PvuII	CAGCTG	2 cut(s)	1528, 2165
RseI	CAYNNNNRTG	2 cut(s)	1059, 1061
SacI	GAGCTC	1 cut(s)	1398
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	7 cut(s)	414, 699, 777, 791, 1275, 2247, 2399
Sau3AI	GATC	7 cut(s)	301, 1285, 1456, 1933, 2113, 2150, 3175
Sau96I	GGNCC	4 cut(s)	91, 1639, 2443, 2507
ScaI	AGTACT	3 cut(s)	65, 1005, 2907
SchI	GAGTC	7 cut(s)	767, 1064, 1204, 1348, 1996, 2114, 2248
ScrFI	CCNGG	5 cut(s)	1454, 1681, 1682, 2006, 2506
SduI	GDGCHC	3 cut(s)	730, 1398, 1761
SfcI	CTRYAG	9 cut(s)	867, 1511, 1656, 1701, 1854, 1893, 2951, 2981, 3116
Sfr274I	CTCGAG	1 cut(s)	1740
SfuI	TTCGAA	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	1740
SmaI	CCCGGG	1 cut(s)	1682
SmiMI	CAYNNNNRTG	2 cut(s)	1059, 1061
SmlI	CTYRAG	3 cut(s)	1740, 2637, 2901
SmoI	CTYRAG	3 cut(s)	1740, 2637, 2901
SphI	GCATGC	1 cut(s)	381
SsiI	CCGC	7 cut(s)	455, 521, 734, 1461, 2345, 2529, 3041
SspI	AATATT	3 cut(s)	654, 2663, 2780
SspMI	CTAG	6 cut(s)	252, 857, 1010, 1323, 1368, 2093
SstI	GAGCTC	1 cut(s)	1398
StyD4I	CCNGG	5 cut(s)	1452, 1679, 1680, 2004, 2504
StyI	CCWWGG	4 cut(s)	251, 1254, 1917, 1980
TaaI	ACNGT	7 cut(s)	211, 363, 882, 1597, 1977, 2751, 3211
TaiI	ACGT	2 cut(s)	814, 2787
TaqI	TCGA	4 cut(s)	13, 1741, 1936, 3146
TaqII	GACCGA	1 cut(s)	654
TatI	WGTACW	8 cut(s)	63, 718, 1003, 1376, 2072, 2521, 2905, 2998
TauI	GCSGC	2 cut(s)	737, 2531
Tru1I	TTAA	7 cut(s)	414, 699, 777, 791, 1275, 2247, 2399
Tru9I	TTAA	7 cut(s)	414, 699, 777, 791, 1275, 2247, 2399
TscAI	CASTG	5 cut(s)	93, 339, 1001, 1980, 2205
TseFI	GTSAC	2 cut(s)	1943, 2384
Tsp45I	GTSAC	2 cut(s)	1943, 2384
TspGWI	ACGGA	1 cut(s)	3009
TspMI	CCCGGG	1 cut(s)	1680
TspRI	CASTG	5 cut(s)	93, 339, 1001, 1980, 2205
Van91I	CCANNNNNTGG	1 cut(s)	311
VspI	ATTAAT	2 cut(s)	414, 2247
XapI	RAATTY	8 cut(s)	56, 273, 820, 1315, 1999, 2017, 2421, 3187
XbaI	TCTAGA	2 cut(s)	1009, 1367
XceI	RCATGY	3 cut(s)	381, 1220, 2327
XhoI	CTCGAG	1 cut(s)	1740
XmaI	CCCGGG	1 cut(s)	1680
XmaJI	CCTAGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	1268
XmnI	GAANNNNTTC	1 cut(s)	1888
XspI	CTAG	6 cut(s)	252, 857, 1010, 1323, 1368, 2093
ZrmI	AGTACT	3 cut(s)	65, 1005, 2907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.