Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Reverse (-)

9463685 .. 9466319

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAGTTTGAGCTGCAATTCTGTACCAGAGGCTGAGCCCATGGAACCAGCGACTCCAGATGAAATTCGCCGAGCTTCGCTGGACTTCGATCACTGGACCTCACTCATTTCGCAGATAGAGAATTCCTATCCTGATGACATGGAGAAAATATGCTCAGTGTATGATTCTTTCTTGGCCGAGTTTCCGTTGTGCCATGGATATTGGAGGAGGTATGCTGAGCATAAGATGCGTTTGTGCTCCATTGACAAGGTTGTTGAGGTCTTTGAACGAGCTCTGCAAGCTGCAACCTACTGTGTTCCGCTGTGGGTGGACTACTGTGTTTTCAGTATGTCCTTTTTCGAAGATCCTTCCGATATTCGCAGACTATTTAAAAGAGGGATGTCCTTTGTTCGAAAGGACTATGGGTGCTATACTTTGTGGGACAAATACATTGAATTTGAATACTCTCAGCAGGAATGGAGTTCACTGGCCCTGATTTACATCCAAGCTCTTAGATTCCCTACCAAGAAGTTGCATATTTATTATGCGAGTTTGAAGAAGTTGGCTACCTTGTTTGAAGAGGAGATGAAAAGCCAGAGTAATTCTACTGTCGATTTGCAGTCAGAAGCTTTATTTGATGGTGAAGTCCCTAGGTTTTTTGGAGATGATGAAATTTCTCTTGTAGTCAAAGACCTTCTGGATCCAGCAATTGGCTCAGGAAGGTCTAAAGCACTGCAAAGATACATATGTATTGGGAAACAGTTGTATCACGAAGCATGCCAGCTTGATGAAAAGATTGGTACTTTTGAGATTAATATAAGGAGGTCTTACTTCCATGTAAAGGAGCTTGATGCGGGTCAGTTGGAGAATTGGCATCGCTATCTGGACTATGTTGAGATGCAAGGGGATTTTGATTGGGCGGTGAAGCTTTATGAGAGGTGCTTGATTCCCTGTGCTAATTACCCTGAGTTTTGGATGCGTTATGTGGATTTCGTGGAAATCAATGGAGGAAGAGAAATTGCAAACTATTCTCTTGACCGAGCAACCCAAATATTTGTGAAGGATGCCTTGACTGAATTGCTTTGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

41.87

Weight (kDa)

4.89

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	20 - 146	1.1e-10	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	20 - 128	5.3e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	21 - 179	1.9e-48	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	258 - 348	1.7e-33	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AciI	CCGC	3 cut(s)	299, 833, 899
AclWI	GGATC	3 cut(s)	338, 674, 687
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	4 cut(s)	63, 121, 434, 651
AfaI	GTAC	3 cut(s)	24, 781, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	689, 820
AgsI	TTSAA	5 cut(s)	266, 434, 440, 535, 557
AluBI	AGCT	9 cut(s)	12, 74, 272, 281, 488, 608, 763, 826, 907
AluI	AGCT	9 cut(s)	12, 74, 272, 281, 488, 608, 763, 826, 907
Alw21I	GWGCWC	2 cut(s)	239, 274
AlwI	GGATC	3 cut(s)	338, 674, 687
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	174, 468
ApeKI	GCWGC	2 cut(s)	12, 281
ApoI	RAATTY	4 cut(s)	63, 121, 434, 651
AseI	ATTAAT	1 cut(s)	792
AspA2I	CCTAGG	1 cut(s)	629
AspS9I	GGNCC	2 cut(s)	96, 469
AsuHPI	GGTGA	2 cut(s)	632, 913
AsuII	TTCGAA	2 cut(s)	339, 391
AvaII	GGWCC	1 cut(s)	96
AvrII	CCTAGG	1 cut(s)	629
BaeI	ACNNNNGTAYC	4 cut(s)	712, 728, 745, 761
BamHI	GGATCC	1 cut(s)	679
BanII	GRGCYC	2 cut(s)	39, 274
Bbv12I	GWGCWC	2 cut(s)	239, 274
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	630
BisI	GCNGC	2 cut(s)	13, 282
BlnI	CCTAGG	1 cut(s)	629
BlpI	GCTNAGC	2 cut(s)	33, 216
BlsI	GCNGC	2 cut(s)	14, 283
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	96, 469
BmiI	GGNNCC	2 cut(s)	45, 681
BmsI	GCATC	6 cut(s)	216, 820, 862, 867, 945, 1033
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	694
Bpu1102I	GCTNAGC	2 cut(s)	33, 216
Bpu14I	TTCGAA	2 cut(s)	339, 391
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	39, 193, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 820
Bse1I	ACTGG	2 cut(s)	98, 471
Bse8I	GATNNNNATC	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	39, 193, 629
BseGI	GGATG	4 cut(s)	384, 480, 960, 1048
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	689, 820
BseMII	CTCAG	6 cut(s)	24, 168, 207, 461, 708, 936
BseNI	ACTGG	2 cut(s)	98, 471
BseRI	GAGGAG	2 cut(s)	220, 575
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	176, 470
BsiHKAI	GWGCWC	2 cut(s)	239, 274
BslFI	GGGAC	2 cut(s)	434, 611
BslI	CCNNNNNNNGG	2 cut(s)	689, 820
BsmFI	GGGAC	2 cut(s)	434, 611
BsnI	GGCC	2 cut(s)	176, 470
Bsp119I	TTCGAA	2 cut(s)	339, 391
Bsp1286I	GDGCHC	3 cut(s)	39, 239, 274
Bsp1407I	TGTACA	1 cut(s)	1064
Bsp143I	GATC	3 cut(s)	88, 343, 679
Bsp1720I	GCTNAGC	2 cut(s)	33, 216
Bsp19I	CCATGG	2 cut(s)	39, 193
BspACI	CCGC	3 cut(s)	299, 833, 899
BspANI	GGCC	2 cut(s)	176, 470
BspCNI	CTCAG	6 cut(s)	25, 167, 208, 460, 707, 937
BspLI	GGNNCC	2 cut(s)	45, 681
BspPI	GGATC	3 cut(s)	338, 674, 687
BspT104I	TTCGAA	2 cut(s)	339, 391
BsrGI	TGTACA	1 cut(s)	1064
BsrI	ACTGG	2 cut(s)	98, 471
BssECI	CCNNGG	3 cut(s)	39, 193, 629
BssMI	GATC	3 cut(s)	88, 343, 679
BssT1I	CCWWGG	3 cut(s)	39, 193, 629
Bst4CI	ACNGT	4 cut(s)	293, 317, 589, 741
Bst6I	CTCTTC	2 cut(s)	552, 985
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	1064
BstBI	TTCGAA	2 cut(s)	339, 391
BstC8I	GCNNGC	3 cut(s)	279, 757, 761
BstDEI	CTNAG	7 cut(s)	33, 154, 216, 447, 491, 694, 945
BstDSI	CCRYGG	2 cut(s)	39, 193
BstF5I	GGATG	4 cut(s)	384, 480, 960, 1048
BstKTI	GATC	3 cut(s)	91, 346, 682
BstMBI	GATC	3 cut(s)	88, 343, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 278
BstNSI	RCATGY	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	343, 679
BstYI	RGATCY	2 cut(s)	343, 679
BsuRI	GGCC	2 cut(s)	176, 470
BtgI	CCRYGG	2 cut(s)	39, 193
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	4 cut(s)	384, 480, 960, 1048
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	4 cut(s)	91, 162, 464, 710
Cac8I	GCNNGC	3 cut(s)	279, 757, 761
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	96, 469
Csp6I	GTAC	3 cut(s)	23, 780, 1065
CviAII	CATG	6 cut(s)	40, 139, 194, 756, 815, 1068
CviQI	GTAC	3 cut(s)	23, 780, 1065
DdeI	CTNAG	7 cut(s)	33, 154, 216, 447, 491, 694, 945
DpnI	GATC	3 cut(s)	90, 345, 681
DpnII	GATC	3 cut(s)	88, 343, 679
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	552, 985
EarI	CTCTTC	2 cut(s)	552, 985
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	3 cut(s)	39, 193, 629
Eco24I	GRGCYC	2 cut(s)	39, 274
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	121
EcoT14I	CCWWGG	3 cut(s)	39, 193, 629
EcoT38I	GRGCYC	2 cut(s)	39, 274
ErhI	CCWWGG	3 cut(s)	39, 193, 629
FaeI	CATG	6 cut(s)	43, 142, 197, 759, 818, 1071
FalI	AAGNNNNNCTT	4 cut(s)	790, 822, 1031, 1063
FaqI	GGGAC	2 cut(s)	434, 611
FatI	CATG	6 cut(s)	39, 138, 193, 755, 814, 1067
FauI	CCCGC	1 cut(s)	826
FauNDI	CATATG	1 cut(s)	725
Fnu4HI	GCNGC	2 cut(s)	13, 282
FokI	GGATG	4 cut(s)	391, 467, 967, 1055
FriOI	GRGCYC	2 cut(s)	39, 274
Fsp4HI	GCNGC	2 cut(s)	13, 282
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	2 cut(s)	13, 282
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	176, 470
Hin1II	CATG	6 cut(s)	43, 142, 197, 759, 818, 1071
HindIII	AAGCTT	2 cut(s)	606, 905
HinfI	GANTC	4 cut(s)	52, 164, 495, 925
HphI	GGTGA	2 cut(s)	632, 913
Hpy166II	GTNNAC	2 cut(s)	310, 464
Hpy188I	TCNGA	2 cut(s)	352, 604
Hpy188III	TCNNGA	7 cut(s)	56, 131, 677, 696, 749, 863, 1013
Hpy8I	GTNNAC	2 cut(s)	310, 464
HpyAV	CCTTC	4 cut(s)	357, 683, 693, 1033
HpyCH4III	ACNGT	4 cut(s)	293, 317, 589, 741
HpyCH4V	TGCA	8 cut(s)	15, 277, 284, 514, 598, 715, 880, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 278
HpyF3I	CTNAG	7 cut(s)	33, 154, 216, 447, 491, 694, 945
Hsp92II	CATG	6 cut(s)	43, 142, 197, 759, 818, 1071
Kzo9I	GATC	3 cut(s)	88, 343, 679
LmnI	GCTCC	2 cut(s)	242, 823
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	6 cut(s)	216, 820, 862, 867, 945, 1033
MaeI	CTAG	1 cut(s)	630
MalI	GATC	3 cut(s)	90, 345, 681
MboI	GATC	3 cut(s)	88, 343, 679
MboII	GAAGA	4 cut(s)	353, 547, 569, 1002
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	2 cut(s)	343, 679
MhlI	GDGCHC	3 cut(s)	39, 239, 274
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	822
MseI	TTAA	2 cut(s)	369, 792
MspA1I	CMGCKG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	226, 278
NcoI	CCATGG	2 cut(s)	39, 193
NdeI	CATATG	1 cut(s)	725
NdeII	GATC	3 cut(s)	88, 343, 679
NlaIII	CATG	6 cut(s)	43, 142, 197, 759, 818, 1071
NlaIV	GGNNCC	2 cut(s)	45, 681
NmeAIII	GCCGAG	2 cut(s)	95, 202
NspI	RCATGY	1 cut(s)	759
NspV	TTCGAA	2 cut(s)	339, 391
PaeI	GCATGC	1 cut(s)	759
PfeI	GAWTC	3 cut(s)	164, 495, 925
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	14, 283
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	45, 681
PspPI	GGNCC	2 cut(s)	96, 469
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	343, 679
RsaI	GTAC	3 cut(s)	24, 781, 1066
RsaNI	GTAC	3 cut(s)	23, 780, 1065
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	369, 792
SatI	GCNGC	2 cut(s)	13, 282
Sau3AI	GATC	3 cut(s)	88, 343, 679
Sau96I	GGNCC	2 cut(s)	96, 469
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	3 cut(s)	39, 239, 274
SfaNI	GCATC	6 cut(s)	216, 820, 862, 867, 945, 1033
SfuI	TTCGAA	2 cut(s)	339, 391
SinI	GGWCC	1 cut(s)	96
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	3 cut(s)	299, 833, 899
SspI	AATATT	1 cut(s)	1032
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	274
StyI	CCWWGG	3 cut(s)	39, 193, 629
TaaI	ACNGT	4 cut(s)	293, 317, 589, 741
TaqI	TCGA	4 cut(s)	87, 339, 391, 591
TaqII	GACCGA	1 cut(s)	1032
TatI	WGTACW	1 cut(s)	1064
TfiI	GAWTC	3 cut(s)	164, 495, 925
Tru1I	TTAA	2 cut(s)	369, 792
Tru9I	TTAA	2 cut(s)	369, 792
TscAI	CASTG	4 cut(s)	98, 162, 471, 717
TseI	GCWGC	2 cut(s)	12, 281
TspDTI	ATGAA	4 cut(s)	75, 581, 663, 783
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	4 cut(s)	98, 162, 471, 717
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	792
XapI	RAATTY	4 cut(s)	63, 121, 434, 651
XceI	RCATGY	1 cut(s)	759
XmaJI	CCTAGG	1 cut(s)	629
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.