Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006885.1

Orthogroup ID

OG0005841

Physical Location & Seq

Genomic Coordinates Reverse (-)

40619 .. 45608

Gene Structure 4990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006885.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

tcattgttggatgaagatgaatatgacttgttcatagttgggagacgacacaacgtgaggagtgctcagacaataggtcttgacgactggagtgaatacccggagcttggggtcattggagacgtgctttcatccaccgacgactcgggttgcaaatctagtgtcttgatagcaatgcaatgccagaatgagcacttgttcaacttagataaggctgagcccatggaaccagcgactccagatgaaattcaccgagcttcgctggacttcgatcactggacctcactcatttcgcagatagagaattcctatcctgatgacatggagaaaatatgctcagtgtatgattctttcttggccgagtttccgttgtgccatggatattggaggaggtatgctgagcataagatgcgtttgtgctccattgacaaggttgttgaggtctttgaacgagctctgcaagctgcaacctactgtgttccgctgtgggtggactactgtgttttcagtatgtcctttttcgaagatccttccgatattcgcagactatttaaaagagggatgtcctttgttcgaaaggactatgggtgctatactttgtgggacaaatacattgaatttgagtactctcagcaggaatggagttcactggccctgatttacatccaagctcttagattccctaccaagaagttgcatatttattatgcgagtttgaagaagttggctaccttgtttgaagaggagatgaaaagccagagtaattctactgtggatttgcagtcagaagctttatttgatggtgaagtccctaggttttttggagatgatgaaatttctcttgtagtcaaagaccttctggatccagcaattggctcaggaaggtctaaagcactgcaaagatacatatgtattgggaaacagttgtatcacgaagcatgccagcttgatgaaaagattggtacttttgagattaatataaggaggtcttacttccatgtaaaggagcttgatgcgggtcagttggagaattggcatcgctatctggactatgttgagatgcaaggggattttgattgggcggtgaagctttatgagaggtgcttgattccctgtgctaattaccctgagttttggatgcgttatgtggatttcgtggaaatcaatggaggaagagaaattgcaaactattctcttgaccgagcaacccaaatatttgtgaagagagtgtcggtgattcatcttttgaatgccaagttcaaggagcaaataggagatgtacttggtgcccgtgcggctcttcttcaatgtaatgcagagtcagatacacacttcgttaagaatgttatcttaaaggctaatatggaaaaacgtttggtatgcaatatggtctttcatcactcaaacaaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

54.93

Weight (kDa)

5.15

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46400 AT5G46400 AT5G46400
fragaria_vesca	FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350
malus_domestica	MD10G1267400.v1.1
prunus_persica	Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1
pyrus_communis	pycom10g22340
rosa_chinensis	RchiOBHm_Chr5g0012961
rosa_laevigata	RLG00000031972
rosa_multiflora	Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063630
rosa_rugosa	Rorug05G0005500
rosa_samantha	Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300
rosa_wichuraiana	Rw5G008720 Rw5G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1286
AccB7I	CCANNNNNTGG	1 cut(s)	872
AciI	CCGC	4 cut(s)	482, 1016, 1082, 1295
AclI	AACGTT	1 cut(s)	1372
AclWI	GGATC	3 cut(s)	521, 857, 870
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	4 cut(s)	246, 304, 617, 834
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	626, 964, 1281
AfiI	CCNNNNNNNGG	3 cut(s)	107, 872, 1003
AgsI	TTSAA	8 cut(s)	202, 449, 617, 718, 740, 1249, 1261, 1307
AhdI	GACNNNNNGTC	1 cut(s)	75
AjiI	CACGTC	1 cut(s)	124
AluBI	AGCT	9 cut(s)	106, 257, 455, 464, 671, 791, 946, 1009, 1090
AluI	AGCT	9 cut(s)	106, 257, 455, 464, 671, 791, 946, 1009, 1090
Alw21I	GWGCWC	4 cut(s)	67, 195, 422, 457
Alw26I	GTCTC	2 cut(s)	37, 114
AlwI	GGATC	3 cut(s)	521, 857, 870
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	357, 651
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	4 cut(s)	246, 304, 617, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	975
AspA2I	CCTAGG	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	279, 652
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	242, 815, 1096, 1246
AsuII	TTCGAA	2 cut(s)	522, 574
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	279
AvrII	CCTAGG	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	1291
BaeI	ACNNNNGTAYC	4 cut(s)	895, 911, 928, 944
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	1286
BanII	GRGCYC	2 cut(s)	222, 457
Bbv12I	GWGCWC	4 cut(s)	67, 195, 422, 457
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	37, 114
BfaI	CTAG	2 cut(s)	159, 813
BglI	GCCNNNNNGGC	1 cut(s)	1295
BisI	GCNGC	2 cut(s)	465, 1296
BlnI	CCTAGG	1 cut(s)	812
BlpI	GCTNAGC	2 cut(s)	216, 399
BlsI	GCNGC	2 cut(s)	466, 1297
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	279, 652
BmiI	GGNNCC	3 cut(s)	228, 864, 1288
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	5 cut(s)	399, 1003, 1045, 1050, 1128
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	2 cut(s)	109, 222
Bpu10I	CCTNAGC	1 cut(s)	877
Bpu1102I	GCTNAGC	2 cut(s)	216, 399
Bpu14I	TTCGAA	2 cut(s)	522, 574
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	222, 376, 812
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 872, 1003
Bse1I	ACTGG	3 cut(s)	92, 281, 654
Bse3DI	GCAATG	2 cut(s)	180, 185
Bse8I	GATNNNNATC	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	222, 376, 812
BseGI	GGATG	5 cut(s)	16, 131, 567, 663, 1143
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	3 cut(s)	107, 872, 1003
BseMI	GCAATG	2 cut(s)	180, 185
BseMII	CTCAG	7 cut(s)	80, 207, 351, 390, 644, 891, 1119
BseNI	ACTGG	3 cut(s)	92, 281, 654
BseRI	GAGGAG	3 cut(s)	73, 403, 758
BseSI	GKGCMC	1 cut(s)	1291
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	2 cut(s)	359, 653
BshNI	GGYRCC	1 cut(s)	1286
BsiHKAI	GWGCWC	4 cut(s)	67, 195, 422, 457
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	617, 794
BslI	CCNNNNNNNGG	3 cut(s)	107, 872, 1003
BsmAI	GTCTC	2 cut(s)	37, 114
BsmBI	CGTCTC	2 cut(s)	37, 114
BsmFI	GGGAC	2 cut(s)	617, 794
BsmI	GAATGC	1 cut(s)	1255
BsnI	GGCC	2 cut(s)	359, 653
BsoBI	CYCGRG	1 cut(s)	145
Bsp119I	TTCGAA	2 cut(s)	522, 574
Bsp1286I	GDGCHC	6 cut(s)	67, 195, 222, 422, 457, 1291
Bsp143I	GATC	3 cut(s)	271, 526, 862
Bsp1720I	GCTNAGC	2 cut(s)	216, 399
Bsp19I	CCATGG	2 cut(s)	222, 376
BspACI	CCGC	4 cut(s)	482, 1016, 1082, 1295
BspANI	GGCC	2 cut(s)	359, 653
BspCNI	CTCAG	7 cut(s)	79, 208, 350, 391, 643, 890, 1120
BspLI	GGNNCC	3 cut(s)	228, 864, 1288
BspPI	GGATC	3 cut(s)	521, 857, 870
BspQI	GCTCTTC	1 cut(s)	1305
BspT104I	TTCGAA	2 cut(s)	522, 574
BspT107I	GGYRCC	1 cut(s)	1286
BsrDI	GCAATG	2 cut(s)	180, 185
BsrI	ACTGG	3 cut(s)	92, 281, 654
BssECI	CCNNGG	3 cut(s)	222, 376, 812
BssMI	GATC	3 cut(s)	271, 526, 862
BssT1I	CCWWGG	3 cut(s)	222, 376, 812
Bst4CI	ACNGT	4 cut(s)	476, 500, 772, 924
Bst6I	CTCTTC	4 cut(s)	735, 1168, 1217, 1305
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstBI	TTCGAA	2 cut(s)	522, 574
BstC8I	GCNNGC	3 cut(s)	462, 940, 944
BstDEI	CTNAG	9 cut(s)	66, 205, 216, 337, 399, 630, 674, 877, 1128
BstDSI	CCRYGG	2 cut(s)	222, 376
BstF5I	GGATG	5 cut(s)	16, 131, 567, 663, 1143
BstKTI	GATC	3 cut(s)	274, 529, 865
BstMAI	GTCTC	2 cut(s)	37, 114
BstMBI	GATC	3 cut(s)	271, 526, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 461, 1295
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	1291
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	526, 862
BstYI	RGATCY	2 cut(s)	526, 862
BsuRI	GGCC	2 cut(s)	359, 653
BtgI	CCRYGG	2 cut(s)	222, 376
BtgZI	GCGATG	1 cut(s)	1022
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	5 cut(s)	16, 131, 567, 663, 1143
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	4 cut(s)	274, 345, 647, 893
Cac8I	GCNNGC	3 cut(s)	462, 940, 944
Cfr13I	GGNCC	2 cut(s)	279, 652
Csp6I	GTAC	3 cut(s)	625, 963, 1280
CviAII	CATG	5 cut(s)	223, 322, 377, 939, 998
CviQI	GTAC	3 cut(s)	625, 963, 1280
DdeI	CTNAG	9 cut(s)	66, 205, 216, 337, 399, 630, 674, 877, 1128
DpnI	GATC	3 cut(s)	273, 528, 864
DpnII	GATC	3 cut(s)	271, 526, 862
DraI	TTTAAA	1 cut(s)	553
DraIII	CACNNNGTG	1 cut(s)	55
DriI	GACNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	4 cut(s)	735, 1168, 1217, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	4 cut(s)	735, 1168, 1217, 1305
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	3 cut(s)	222, 376, 812
Eco24I	GRGCYC	2 cut(s)	222, 457
Eco47I	GGWCC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	304
EcoT14I	CCWWGG	3 cut(s)	222, 376, 812
EcoT38I	GRGCYC	2 cut(s)	222, 457
ErhI	CCWWGG	3 cut(s)	222, 376, 812
Esp3I	CGTCTC	2 cut(s)	37, 114
FaeI	CATG	5 cut(s)	226, 325, 380, 942, 1001
FalI	AAGNNNNNCTT	2 cut(s)	973, 1005
FaqI	GGGAC	2 cut(s)	617, 794
FatI	CATG	5 cut(s)	222, 321, 376, 938, 997
FauI	CCCGC	1 cut(s)	1009
FauNDI	CATATG	1 cut(s)	908
Fnu4HI	GCNGC	2 cut(s)	465, 1296
FokI	GGATG	5 cut(s)	23, 118, 574, 650, 1150
FriOI	GRGCYC	2 cut(s)	222, 457
Fsp4HI	GCNGC	2 cut(s)	465, 1296
FspBI	CTAG	2 cut(s)	159, 813
GluI	GCNGC	2 cut(s)	465, 1296
GsuI	CTGGAG	2 cut(s)	109, 222
HaeIII	GGCC	2 cut(s)	359, 653
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	5 cut(s)	226, 325, 380, 942, 1001
HindIII	AAGCTT	2 cut(s)	789, 1088
HinfI	GANTC	7 cut(s)	143, 235, 347, 678, 1108, 1237, 1319
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	4 cut(s)	242, 815, 1096, 1246
Hpy166II	GTNNAC	2 cut(s)	493, 647
Hpy188I	TCNGA	4 cut(s)	69, 535, 787, 1324
Hpy188III	TCNNGA	9 cut(s)	80, 166, 239, 314, 860, 879, 932, 1046, 1196
Hpy8I	GTNNAC	2 cut(s)	493, 647
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	540, 866, 876
HpyCH4III	ACNGT	4 cut(s)	476, 500, 772, 924
HpyCH4IV	ACGT	3 cut(s)	54, 123, 1372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 461, 1295
HpyF3I	CTNAG	9 cut(s)	66, 205, 216, 337, 399, 630, 674, 877, 1128
HpySE526I	ACGT	3 cut(s)	54, 123, 1372
Hsp92II	CATG	5 cut(s)	226, 325, 380, 942, 1001
Kzo9I	GATC	3 cut(s)	271, 526, 862
LguI	GCTCTTC	1 cut(s)	1305
LmnI	GCTCC	4 cut(s)	103, 425, 1006, 1264
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	5 cut(s)	399, 1003, 1045, 1050, 1128
MaeI	CTAG	2 cut(s)	159, 813
MaeII	ACGT	3 cut(s)	54, 123, 1372
MalI	GATC	3 cut(s)	273, 528, 864
MboI	GATC	3 cut(s)	271, 526, 862
MboII	GAAGA	8 cut(s)	26, 536, 730, 752, 1185, 1234, 1292, 1295
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	526, 862
MhlI	GDGCHC	6 cut(s)	67, 195, 222, 422, 457, 1291
MluCI	AATT	9 cut(s)	246, 304, 617, 763, 834, 870, 1030, 1120, 1179
MlyI	GAGTC	3 cut(s)	137, 229, 1328
MmeI	TCCRAC	1 cut(s)	1005
MseI	TTAA	4 cut(s)	552, 975, 1338, 1352
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	1255
MwoI	GCNNNNNNNGC	3 cut(s)	409, 461, 1295
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	2 cut(s)	222, 376
NdeI	CATATG	1 cut(s)	908
NdeII	GATC	3 cut(s)	271, 526, 862
NlaIII	CATG	5 cut(s)	226, 325, 380, 942, 1001
NlaIV	GGNNCC	3 cut(s)	228, 864, 1288
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	942
NspV	TTCGAA	2 cut(s)	522, 574
PaeI	GCATGC	1 cut(s)	942
PciSI	GCTCTTC	1 cut(s)	1305
PctI	GAATGC	1 cut(s)	1255
PfeI	GAWTC	4 cut(s)	347, 678, 1108, 1237
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	2 cut(s)	466, 1297
PleI	GAGTC	3 cut(s)	137, 229, 1327
PpsI	GAGTC	3 cut(s)	137, 229, 1327
PshBI	ATTAAT	1 cut(s)	975
Psp124BI	GAGCTC	1 cut(s)	457
Psp1406I	AACGTT	1 cut(s)	1372
PspN4I	GGNNCC	3 cut(s)	228, 864, 1288
PspPI	GGNCC	2 cut(s)	279, 652
PsuI	RGATCY	2 cut(s)	526, 862
RsaI	GTAC	3 cut(s)	626, 964, 1281
RsaNI	GTAC	3 cut(s)	625, 963, 1280
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	1305
SaqAI	TTAA	4 cut(s)	552, 975, 1338, 1352
SatI	GCNGC	2 cut(s)	465, 1296
Sau3AI	GATC	3 cut(s)	271, 526, 862
Sau96I	GGNCC	2 cut(s)	279, 652
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	3 cut(s)	137, 229, 1328
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	6 cut(s)	67, 195, 222, 422, 457, 1291
SfaNI	GCATC	5 cut(s)	399, 1003, 1045, 1050, 1128
SfuI	TTCGAA	2 cut(s)	522, 574
SinI	GGWCC	1 cut(s)	279
SphI	GCATGC	1 cut(s)	942
Sse9I	AATT	9 cut(s)	246, 304, 617, 763, 834, 870, 1030, 1120, 1179
SsiI	CCGC	4 cut(s)	482, 1016, 1082, 1295
SspI	AATATT	2 cut(s)	1215, 1412
SspMI	CTAG	2 cut(s)	159, 813
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	222, 376, 812
TaaI	ACNGT	4 cut(s)	476, 500, 772, 924
TaiI	ACGT	3 cut(s)	57, 126, 1375
TaqI	TCGA	3 cut(s)	270, 522, 574
TaqII	GACCGA	1 cut(s)	1215
TasI	AATT	9 cut(s)	246, 304, 617, 763, 834, 870, 1030, 1120, 1179
TatI	WGTACW	2 cut(s)	624, 1279
TauI	GCSGC	1 cut(s)	1298
TfiI	GAWTC	4 cut(s)	347, 678, 1108, 1237
Tru1I	TTAA	4 cut(s)	552, 975, 1338, 1352
Tru9I	TTAA	4 cut(s)	552, 975, 1338, 1352
TscAI	CASTG	4 cut(s)	281, 345, 654, 900
TseI	GCWGC	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	4 cut(s)	281, 345, 654, 900
Van91I	CCANNNNNTGG	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	4 cut(s)	246, 304, 617, 834
XceI	RCATGY	1 cut(s)	942
XmaJI	CCTAGG	1 cut(s)	812
XspI	CTAG	2 cut(s)	159, 813
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.