HAT (Half-A-TPR) repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46400 AT5G46400 AT5G46400 |
| fragaria_vesca | FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 FvH4_3g06350 |
| malus_domestica | MD10G1267400.v1.1 |
| prunus_persica | Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 Prupe.4G074100_v2.0.a1 |
| pyrus_communis | pycom10g22340 |
| rosa_chinensis | RchiOBHm_Chr5g0012961 |
| rosa_laevigata | RLG00000031972 |
| rosa_multiflora | Rmu_sc0006885.1_g000007 Rmu_sc0010837.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00063630 |
| rosa_rugosa | Rorug05G0005500 |
| rosa_samantha | Rh5AG099900 Rh5BG096600 Rh5CG108800 Rh5DG095300 |
| rosa_wichuraiana | Rw5G008720 Rw5G008730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2377 |
| Acc36I | ACCTGC | 2 cut(s) | 2377, 2501 |
| AccB1I | GGYRCC | 1 cut(s) | 878 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 464 |
| AccI | GTMKAC | 1 cut(s) | 1421 |
| AccII | CGCG | 1 cut(s) | 2500 |
| AccIII | TCCGGA | 1 cut(s) | 1690 |
| AciI | CCGC | 8 cut(s) | 74, 608, 674, 887, 1614, 2498, 2682, 3200 |
| AclI | AACGTT | 1 cut(s) | 964 |
| AclWI | GGATC | 6 cut(s) | 113, 449, 462, 1604, 1617, 3342 |
| AcoI | YGGCCR | 1 cut(s) | 1603 |
| AcsI | RAATTY | 8 cut(s) | 209, 426, 973, 1468, 2152, 2170, 2574, 3346 |
| AcuI | CTGAAG | 5 cut(s) | 1866, 2052, 2226, 2526, 3107 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 464, 595, 2657 |
| AjnI | CCWGG | 2 cut(s) | 1605, 2157 |
| Alw21I | GWGCWC | 3 cut(s) | 14, 49, 1551 |
| Alw26I | GTCTC | 2 cut(s) | 2379, 2712 |
| AlwI | GGATC | 6 cut(s) | 113, 449, 462, 1604, 1617, 3342 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1106 |
| Ama87I | CYCGRG | 1 cut(s) | 1833 |
| Aor13HI | TCCGGA | 1 cut(s) | 1690 |
| AoxI | GGCC | 7 cut(s) | 243, 1397, 1603, 1791, 1971, 2595, 2660 |
| ApoI | RAATTY | 8 cut(s) | 209, 426, 973, 1468, 2152, 2170, 2574, 3346 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1694, 1726, 2114, 2146 |
| AseI | ATTAAT | 2 cut(s) | 567, 2400 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2041 |
| AspA2I | CCTAGG | 1 cut(s) | 404 |
| AspS9I | GGNCC | 4 cut(s) | 244, 1792, 2596, 2660 |
| AsuC2I | CCSGG | 3 cut(s) | 1834, 1835, 2659 |
| AsuHPI | GGTGA | 4 cut(s) | 407, 688, 838, 2531 |
| AsuII | TTCGAA | 2 cut(s) | 114, 166 |
| AvaI | CYCGRG | 1 cut(s) | 1833 |
| AvrII | CCTAGG | 1 cut(s) | 404 |
| BaeGI | GKGCMC | 1 cut(s) | 883 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 487, 503, 520, 536 |
| BalI | TGGCCA | 1 cut(s) | 1605 |
| BamHI | GGATCC | 2 cut(s) | 454, 1609 |
| BanI | GGYRCC | 1 cut(s) | 878 |
| BanII | GRGCYC | 3 cut(s) | 49, 1551, 1914 |
| BauI | CACGAG | 1 cut(s) | 1110 |
| Bbv12I | GWGCWC | 3 cut(s) | 14, 49, 1551 |
| BbvCI | CCTCAGC | 1 cut(s) | 1290 |
| BccI | CCATC | 7 cut(s) | 386, 1121, 1346, 1408, 1525, 1651, 3336 |
| BciT130I | CCWGG | 2 cut(s) | 1607, 2159 |
| BciVI | GTATCC | 1 cut(s) | 1840 |
| BclI | TGATCA | 2 cut(s) | 1438, 2266 |
| BcnI | CCSGG | 3 cut(s) | 1834, 1835, 2659 |
| BcoDI | GTCTC | 2 cut(s) | 2379, 2712 |
| BfaI | CTAG | 6 cut(s) | 405, 1010, 1163, 1476, 1521, 2246 |
| BfmI | CTRYAG | 9 cut(s) | 1020, 1664, 1809, 1854, 2007, 2046, 3110, 3140, 3275 |
| BfuAI | ACCTGC | 2 cut(s) | 2377, 2501 |
| BfuI | GTATCC | 1 cut(s) | 1840 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 887 |
| BlnI | CCTAGG | 1 cut(s) | 404 |
| BmcAI | AGTACT | 3 cut(s) | 218, 1158, 3066 |
| Bme1390I | CCNGG | 5 cut(s) | 1607, 1834, 1835, 2159, 2659 |
| BmeT110I | CYCGRG | 1 cut(s) | 1833 |
| BmgT120I | GGNCC | 4 cut(s) | 244, 1792, 2596, 2660 |
| BmiI | GGNNCC | 6 cut(s) | 456, 880, 1336, 1611, 1794, 1911 |
| BmrFI | CCNGG | 5 cut(s) | 1607, 1834, 1835, 2159, 2659 |
| BmrI | ACTGGG | 2 cut(s) | 2345, 3392 |
| BmuI | ACTGGG | 2 cut(s) | 2345, 3392 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2391 |
| BpmI | CTGGAG | 2 cut(s) | 2199, 2410 |
| Bpu10I | CCTNAGC | 2 cut(s) | 469, 1290 |
| Bpu14I | TTCGAA | 2 cut(s) | 114, 166 |
| BpuEI | CTTGAG | 3 cut(s) | 1878, 2775, 3045 |
| BpuMI | CCSGG | 3 cut(s) | 1834, 1835, 2659 |
| Bsa29I | ATCGAT | 1 cut(s) | 3305 |
| BsaJI | CCNNGG | 6 cut(s) | 404, 1407, 1833, 2070, 2133, 2157 |
| BsaWI | WCCGGW | 1 cut(s) | 1690 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3240, 3270 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 464, 595, 2657 |
| Bse1I | ACTGG | 4 cut(s) | 246, 2351, 2393, 3398 |
| Bse3DI | GCAATG | 6 cut(s) | 1020, 1191, 1273, 1637, 2086, 2770 |
| BseAI | TCCGGA | 1 cut(s) | 1690 |
| BseBI | CCWGG | 2 cut(s) | 1607, 2159 |
| BseCI | ATCGAT | 1 cut(s) | 3305 |
| BseDI | CCNNGG | 6 cut(s) | 404, 1407, 1833, 2070, 2133, 2157 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 464, 595, 2657 |
| BseMI | GCAATG | 6 cut(s) | 1020, 1191, 1273, 1637, 2086, 2770 |
| BseNI | ACTGG | 4 cut(s) | 246, 2351, 2393, 3398 |
| BseRI | GAGGAG | 5 cut(s) | 350, 1181, 1922, 1982, 3378 |
| BseSI | GKGCMC | 1 cut(s) | 883 |
| BseYI | CCCAGC | 3 cut(s) | 1714, 2598, 2868 |
| BsgI | GTGCAG | 2 cut(s) | 1092, 1119 |
| Bsh1236I | CGCG | 1 cut(s) | 2500 |
| BshFI | GGCC | 7 cut(s) | 245, 1399, 1605, 1793, 1973, 2597, 2662 |
| BshNI | GGYRCC | 1 cut(s) | 878 |
| BshVI | ATCGAT | 1 cut(s) | 3305 |
| BsiHKAI | GWGCWC | 3 cut(s) | 14, 49, 1551 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1833 |
| BsiSI | CCGG | 3 cut(s) | 1691, 1834, 2658 |
| BslFI | GGGAC | 4 cut(s) | 209, 386, 1696, 3379 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 464, 595, 2657 |
| BsmAI | GTCTC | 2 cut(s) | 2379, 2712 |
| BsmFI | GGGAC | 4 cut(s) | 209, 386, 1696, 3379 |
| BsmI | GAATGC | 2 cut(s) | 847, 1282 |
| BsnI | GGCC | 7 cut(s) | 245, 1399, 1605, 1793, 1973, 2597, 2662 |
| BsoBI | CYCGRG | 1 cut(s) | 1833 |
| Bsp119I | TTCGAA | 2 cut(s) | 114, 166 |
| Bsp1286I | GDGCHC | 5 cut(s) | 14, 49, 883, 1551, 1914 |
| Bsp13I | TCCGGA | 1 cut(s) | 1690 |
| Bsp1407I | TGTACA | 2 cut(s) | 2674, 3157 |
| Bsp143I | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| Bsp19I | CCATGG | 1 cut(s) | 2070 |
| BspACI | CCGC | 8 cut(s) | 74, 608, 674, 887, 1614, 2498, 2682, 3200 |
| BspANI | GGCC | 7 cut(s) | 245, 1399, 1605, 1793, 1973, 2597, 2662 |
| BspDI | ATCGAT | 1 cut(s) | 3305 |
| BspEI | TCCGGA | 1 cut(s) | 1690 |
| BspFNI | CGCG | 1 cut(s) | 2500 |
| BspHI | TCATGA | 1 cut(s) | 1083 |
| BspLI | GGNNCC | 6 cut(s) | 456, 880, 1336, 1611, 1794, 1911 |
| BspMAI | CTGCAG | 2 cut(s) | 1024, 3144 |
| BspMI | ACCTGC | 2 cut(s) | 2377, 2501 |
| BspPI | GGATC | 6 cut(s) | 113, 449, 462, 1604, 1617, 3342 |
| BspQI | GCTCTTC | 1 cut(s) | 897 |
| BspT104I | TTCGAA | 2 cut(s) | 114, 166 |
| BspT107I | GGYRCC | 1 cut(s) | 878 |
| BsrDI | GCAATG | 6 cut(s) | 1020, 1191, 1273, 1637, 2086, 2770 |
| BsrGI | TGTACA | 2 cut(s) | 2674, 3157 |
| BsrI | ACTGG | 4 cut(s) | 246, 2351, 2393, 3398 |
| BssECI | CCNNGG | 6 cut(s) | 404, 1407, 1833, 2070, 2133, 2157 |
| BssMI | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| BssSI | CACGAG | 1 cut(s) | 1110 |
| BssT1I | CCWWGG | 4 cut(s) | 404, 1407, 2070, 2133 |
| Bst2BI | CACGAG | 1 cut(s) | 1110 |
| Bst2UI | CCWGG | 2 cut(s) | 1607, 2159 |
| Bst4CI | ACNGT | 7 cut(s) | 364, 516, 1035, 1750, 2130, 2910, 3370 |
| Bst6I | CTCTTC | 8 cut(s) | 327, 760, 809, 897, 1050, 1842, 1932, 2701 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1019, 1106, 1286, 3250 |
| BstAUI | TGTACA | 2 cut(s) | 2674, 3157 |
| BstBI | TTCGAA | 2 cut(s) | 114, 166 |
| BstC8I | GCNNGC | 7 cut(s) | 54, 532, 536, 1446, 2526, 2591, 2595 |
| BstDSI | CCRYGG | 1 cut(s) | 2070 |
| BstEII | GGTNACC | 1 cut(s) | 2537 |
| BstFNI | CGCG | 1 cut(s) | 2500 |
| BstKTI | GATC | 8 cut(s) | 121, 457, 1441, 1612, 2089, 2269, 2306, 3337 |
| BstMAI | GTCTC | 2 cut(s) | 2379, 2712 |
| BstMBI | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| BstNI | CCWGG | 2 cut(s) | 1607, 2159 |
| BstNSI | RCATGY | 3 cut(s) | 534, 1373, 2480 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2391 |
| BstPI | GGTNACC | 1 cut(s) | 2537 |
| BstSCI | CCNGG | 5 cut(s) | 1605, 1832, 1833, 2157, 2657 |
| BstSFI | CTRYAG | 9 cut(s) | 1020, 1664, 1809, 1854, 2007, 2046, 3110, 3140, 3275 |
| BstSLI | GKGCMC | 1 cut(s) | 883 |
| BstUI | CGCG | 1 cut(s) | 2500 |
| BstX2I | RGATCY | 3 cut(s) | 118, 454, 1609 |
| BstYI | RGATCY | 3 cut(s) | 118, 454, 1609 |
| Bsu15I | ATCGAT | 1 cut(s) | 3305 |
| BsuI | GTATCC | 1 cut(s) | 1840 |
| BsuRI | GGCC | 7 cut(s) | 245, 1399, 1605, 1793, 1973, 2597, 2662 |
| BsuTUI | ATCGAT | 1 cut(s) | 3305 |
| BtgI | CCRYGG | 1 cut(s) | 2070 |
| BtgZI | GCGATG | 2 cut(s) | 614, 2792 |
| BtsI | GCAGTG | 2 cut(s) | 485, 1147 |
| BtsIMutI | CAGTG | 5 cut(s) | 239, 485, 1147, 2126, 2358 |
| BveI | ACCTGC | 2 cut(s) | 2377, 2501 |
| Cac8I | GCNNGC | 7 cut(s) | 54, 532, 536, 1446, 2526, 2591, 2595 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1106 |
| CciI | TCATGA | 1 cut(s) | 1083 |
| Cfr13I | GGNCC | 4 cut(s) | 244, 1792, 2596, 2660 |
| Cfr9I | CCCGGG | 1 cut(s) | 1833 |
| ClaI | ATCGAT | 1 cut(s) | 3305 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2115, 2150 |
| DpnI | GATC | 8 cut(s) | 120, 456, 1440, 1611, 2088, 2268, 2305, 3336 |
| DpnII | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| DraI | TTTAAA | 1 cut(s) | 145 |
| EaeI | YGGCCR | 1 cut(s) | 1603 |
| Eam1104I | CTCTTC | 8 cut(s) | 327, 760, 809, 897, 1050, 1842, 1932, 2701 |
| EarI | CTCTTC | 8 cut(s) | 327, 760, 809, 897, 1050, 1842, 1932, 2701 |
| Ecl136II | GAGCTC | 2 cut(s) | 47, 1549 |
| Eco130I | CCWWGG | 4 cut(s) | 404, 1407, 2070, 2133 |
| Eco24I | GRGCYC | 3 cut(s) | 49, 1551, 1914 |
| Eco53kI | GAGCTC | 2 cut(s) | 47, 1549 |
| Eco57I | CTGAAG | 5 cut(s) | 1866, 2052, 2226, 2526, 3107 |
| Eco88I | CYCGRG | 1 cut(s) | 1833 |
| Eco91I | GGTNACC | 1 cut(s) | 2537 |
| EcoICRI | GAGCTC | 2 cut(s) | 47, 1549 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1792 |
| EcoO65I | GGTNACC | 1 cut(s) | 2537 |
| EcoRI | GAATTC | 1 cut(s) | 2152 |
| EcoRII | CCWGG | 2 cut(s) | 1605, 2157 |
| EcoT14I | CCWWGG | 4 cut(s) | 404, 1407, 2070, 2133 |
| EcoT38I | GRGCYC | 3 cut(s) | 49, 1551, 1914 |
| ErhI | CCWWGG | 4 cut(s) | 404, 1407, 2070, 2133 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 565, 597 |
| FaqI | GGGAC | 4 cut(s) | 209, 386, 1696, 3379 |
| FauI | CCCGC | 3 cut(s) | 601, 1621, 2505 |
| FauNDI | CATATG | 1 cut(s) | 500 |
| FbaI | TGATCA | 2 cut(s) | 1438, 2266 |
| FblI | GTMKAC | 1 cut(s) | 1421 |
| FriOI | GRGCYC | 3 cut(s) | 49, 1551, 1914 |
| FspBI | CTAG | 6 cut(s) | 405, 1010, 1163, 1476, 1521, 2246 |
| GsaI | CCCAGC | 3 cut(s) | 1718, 2602, 2872 |
| GsuI | CTGGAG | 2 cut(s) | 2199, 2410 |
| HaeIII | GGCC | 7 cut(s) | 245, 1399, 1605, 1793, 1973, 2597, 2662 |
| HapII | CCGG | 3 cut(s) | 1691, 1834, 2658 |
| HincII | GTYRAC | 2 cut(s) | 1324, 1362 |
| HindII | GTYRAC | 2 cut(s) | 1324, 1362 |
| HindIII | AAGCTT | 4 cut(s) | 381, 680, 1303, 2208 |
| HpaII | CCGG | 3 cut(s) | 1691, 1834, 2658 |
| HphI | GGTGA | 4 cut(s) | 407, 688, 838, 2531 |
| Hpy166II | GTNNAC | 5 cut(s) | 85, 239, 1324, 1362, 1422 |
| Hpy8I | GTNNAC | 5 cut(s) | 85, 239, 1324, 1362, 1422 |
| Hpy99I | CGWCG | 1 cut(s) | 3184 |
| HpyAV | CCTTC | 7 cut(s) | 132, 458, 468, 1395, 2027, 2568, 2852 |
| HpyCH4III | ACNGT | 7 cut(s) | 364, 516, 1035, 1750, 2130, 2910, 3370 |
| HpyCH4IV | ACGT | 3 cut(s) | 255, 964, 2943 |
| HpySE526I | ACGT | 3 cut(s) | 255, 964, 2943 |
| Kpn2I | TCCGGA | 1 cut(s) | 1690 |
| Ksp22I | TGATCA | 2 cut(s) | 1438, 2266 |
| Kzo9I | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| LguI | GCTCTTC | 1 cut(s) | 897 |
| LmnI | GCTCC | 6 cut(s) | 17, 598, 856, 1554, 1909, 2737 |
| MaeI | CTAG | 6 cut(s) | 405, 1010, 1163, 1476, 1521, 2246 |
| MaeII | ACGT | 3 cut(s) | 255, 964, 2943 |
| MaeIII | GTNAC | 4 cut(s) | 1231, 2096, 2451, 2537 |
| MalI | GATC | 8 cut(s) | 120, 456, 1440, 1611, 2088, 2268, 2305, 3336 |
| MboI | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| MfeI | CAATTG | 3 cut(s) | 462, 1139, 3203 |
| MflI | RGATCY | 3 cut(s) | 118, 454, 1609 |
| MhlI | GDGCHC | 5 cut(s) | 14, 49, 883, 1551, 1914 |
| MlsI | TGGCCA | 1 cut(s) | 1605 |
| MluNI | TGGCCA | 1 cut(s) | 1605 |
| MlyI | GAGTC | 7 cut(s) | 920, 1217, 1357, 1501, 2149, 2267, 2401 |
| MmeI | TCCRAC | 4 cut(s) | 597, 2746, 2998, 3283 |
| Mox20I | TGGCCA | 1 cut(s) | 1605 |
| MroI | TCCGGA | 1 cut(s) | 1690 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2041 |
| MscI | TGGCCA | 1 cut(s) | 1605 |
| MseI | TTAA | 8 cut(s) | 144, 567, 852, 930, 944, 1428, 2400, 2552 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1212, 1214 |
| Msp20I | TGGCCA | 1 cut(s) | 1605 |
| MspA1I | CMGCKG | 3 cut(s) | 76, 1681, 2318 |
| MspI | CCGG | 3 cut(s) | 1691, 1834, 2658 |
| MspR9I | CCNGG | 5 cut(s) | 1607, 1834, 1835, 2159, 2659 |
| MunI | CAATTG | 3 cut(s) | 462, 1139, 3203 |
| Mva1269I | GAATGC | 2 cut(s) | 847, 1282 |
| MvaI | CCWGG | 2 cut(s) | 1607, 2159 |
| MvnI | CGCG | 1 cut(s) | 2500 |
| NciI | CCSGG | 3 cut(s) | 1834, 1835, 2659 |
| NcoI | CCATGG | 1 cut(s) | 2070 |
| NdeI | CATATG | 1 cut(s) | 500 |
| NdeII | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| NlaIV | GGNNCC | 6 cut(s) | 456, 880, 1336, 1611, 1794, 1911 |
| NmeAIII | GCCGAG | 1 cut(s) | 1345 |
| NmuCI | GTSAC | 2 cut(s) | 2096, 2537 |
| NspI | RCATGY | 3 cut(s) | 534, 1373, 2480 |
| NspV | TTCGAA | 2 cut(s) | 114, 166 |
| PaeI | GCATGC | 1 cut(s) | 534 |
| PagI | TCATGA | 1 cut(s) | 1083 |
| PaqCI | CACCTGC | 1 cut(s) | 2377 |
| PciSI | GCTCTTC | 1 cut(s) | 897 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1372 |
| PctI | GAATGC | 2 cut(s) | 847, 1282 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2041 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 464 |
| PleI | GAGTC | 7 cut(s) | 919, 1217, 1357, 1501, 2148, 2267, 2400 |
| PpsI | GAGTC | 7 cut(s) | 919, 1217, 1357, 1501, 2148, 2267, 2400 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2391 |
| PshBI | ATTAAT | 2 cut(s) | 567, 2400 |
| Psp124BI | GAGCTC | 2 cut(s) | 49, 1551 |
| Psp1406I | AACGTT | 1 cut(s) | 964 |
| Psp6I | CCWGG | 2 cut(s) | 1605, 2157 |
| PspEI | GGTNACC | 1 cut(s) | 2537 |
| PspFI | CCCAGC | 3 cut(s) | 1714, 2598, 2868 |
| PspGI | CCWGG | 2 cut(s) | 1605, 2157 |
| PspN4I | GGNNCC | 6 cut(s) | 456, 880, 1336, 1611, 1794, 1911 |
| PspPI | GGNCC | 4 cut(s) | 244, 1792, 2596, 2660 |
| PstI | CTGCAG | 2 cut(s) | 1024, 3144 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1106 |
| PsuI | RGATCY | 3 cut(s) | 118, 454, 1609 |
| PvuII | CAGCTG | 2 cut(s) | 1681, 2318 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1212, 1214 |
| SacI | GAGCTC | 2 cut(s) | 49, 1551 |
| SapI | GCTCTTC | 1 cut(s) | 897 |
| SaqAI | TTAA | 8 cut(s) | 144, 567, 852, 930, 944, 1428, 2400, 2552 |
| Sau3AI | GATC | 8 cut(s) | 118, 454, 1438, 1609, 2086, 2266, 2303, 3334 |
| Sau96I | GGNCC | 4 cut(s) | 244, 1792, 2596, 2660 |
| ScaI | AGTACT | 3 cut(s) | 218, 1158, 3066 |
| SchI | GAGTC | 7 cut(s) | 920, 1217, 1357, 1501, 2149, 2267, 2401 |
| ScrFI | CCNGG | 5 cut(s) | 1607, 1834, 1835, 2159, 2659 |
| SduI | GDGCHC | 5 cut(s) | 14, 49, 883, 1551, 1914 |
| SfcI | CTRYAG | 9 cut(s) | 1020, 1664, 1809, 1854, 2007, 2046, 3110, 3140, 3275 |
| SfuI | TTCGAA | 2 cut(s) | 114, 166 |
| SmaI | CCCGGG | 1 cut(s) | 1835 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1212, 1214 |
| SmlI | CTYRAG | 3 cut(s) | 1893, 2790, 3060 |
| SmoI | CTYRAG | 3 cut(s) | 1893, 2790, 3060 |
| SphI | GCATGC | 1 cut(s) | 534 |
| SsiI | CCGC | 8 cut(s) | 74, 608, 674, 887, 1614, 2498, 2682, 3200 |
| SspI | AATATT | 4 cut(s) | 141, 807, 2816, 2939 |
| SspMI | CTAG | 6 cut(s) | 405, 1010, 1163, 1476, 1521, 2246 |
| SstI | GAGCTC | 2 cut(s) | 49, 1551 |
| StyD4I | CCNGG | 5 cut(s) | 1605, 1832, 1833, 2157, 2657 |
| StyI | CCWWGG | 4 cut(s) | 404, 1407, 2070, 2133 |
| TaaI | ACNGT | 7 cut(s) | 364, 516, 1035, 1750, 2130, 2910, 3370 |
| TaiI | ACGT | 3 cut(s) | 258, 967, 2946 |
| TaqI | TCGA | 4 cut(s) | 114, 166, 2089, 3305 |
| TaqII | GACCGA | 1 cut(s) | 807 |
| TatI | WGTACW | 8 cut(s) | 216, 871, 1156, 1529, 2225, 2674, 3064, 3157 |
| TauI | GCSGC | 2 cut(s) | 890, 2684 |
| Tru1I | TTAA | 8 cut(s) | 144, 567, 852, 930, 944, 1428, 2400, 2552 |
| Tru9I | TTAA | 8 cut(s) | 144, 567, 852, 930, 944, 1428, 2400, 2552 |
| TscAI | CASTG | 5 cut(s) | 246, 492, 1154, 2133, 2358 |
| TseFI | GTSAC | 2 cut(s) | 2096, 2537 |
| Tsp45I | GTSAC | 2 cut(s) | 2096, 2537 |
| TspGWI | ACGGA | 1 cut(s) | 3168 |
| TspMI | CCCGGG | 1 cut(s) | 1833 |
| TspRI | CASTG | 5 cut(s) | 246, 492, 1154, 2133, 2358 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 464 |
| VspI | ATTAAT | 2 cut(s) | 567, 2400 |
| XapI | RAATTY | 8 cut(s) | 209, 426, 973, 1468, 2152, 2170, 2574, 3346 |
| XbaI | TCTAGA | 2 cut(s) | 1162, 1520 |
| XceI | RCATGY | 3 cut(s) | 534, 1373, 2480 |
| XmaI | CCCGGG | 1 cut(s) | 1833 |
| XmaJI | CCTAGG | 1 cut(s) | 404 |
| XmiI | GTMKAC | 1 cut(s) | 1421 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2041 |
| XspI | CTAG | 6 cut(s) | 405, 1010, 1163, 1476, 1521, 2246 |
| ZrmI | AGTACT | 3 cut(s) | 218, 1158, 3066 |